RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ZBED9Q6R2W3 1325 aa16.9■□□□□ 0.3
CLK3-213ENST00000563842 KIF16BQ96L93 1317 aa16.9■□□□□ 0.3
CLK3-213ENST00000563842 COL4A5P29400 1685 aa16.89■□□□□ 0.29
CLK3-213ENST00000563842 POTECB2RU33 542 aa16.89■□□□□ 0.29
CLK3-213ENST00000563842 ATP2B4P23634 1241 aa16.89■□□□□ 0.29
CLK3-213ENST00000563842 IFIT5Q13325 482 aaKnown RBP16.89■□□□□ 0.29
CLK3-213ENST00000563842 SMC1BQ8NDV3 1235 aa16.89■□□□□ 0.29
CLK3-213ENST00000563842 TBC1D16Q8TBP0 767 aa16.89■□□□□ 0.29
CLK3-213ENST00000563842 POLLQ9UGP5 575 aa16.89■□□□□ 0.29
CLK3-213ENST00000563842 CHMP3Q9Y3E7 222 aa16.89■□□□□ 0.29
CLK3-213ENST00000563842 GJA3Q9Y6H8 435 aa16.89■□□□□ 0.29
CLK3-213ENST00000563842 G3V3G9 751 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 IPO8O15397 1037 aaKnown RBP16.88■□□□□ 0.29
CLK3-213ENST00000563842 UFL1O94874 794 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 LMOD1P29536 600 aaPredicted RBP16.88■□□□□ 0.29
CLK3-213ENST00000563842 CCT4P50991 539 aaKnown RBP16.88■□□□□ 0.29
CLK3-213ENST00000563842 FOXO4P98177 505 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 TNIP1Q15025 636 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 CCDC57Q2TAC2 916 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 FAM161AQ3B820 660 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 DCAF8Q5TAQ9 597 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 ARHGAP45Q92619 1136 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 HACL1Q9UJ83 578 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 NOB1Q9ULX3 412 aaKnown RBP16.88■□□□□ 0.29
CLK3-213ENST00000563842 UTYO14607 1347 aa16.88■□□□□ 0.29
CLK3-213ENST00000563842 APLP1P51693 650 aa16.87■□□□□ 0.29
CLK3-213ENST00000563842 CIAPIN1Q6FI81 312 aa16.87■□□□□ 0.29
CLK3-213ENST00000563842 LMBR1LQ6UX01 489 aa16.87■□□□□ 0.29
CLK3-213ENST00000563842 ANKRD2Q9GZV1 360 aa16.87■□□□□ 0.29
CLK3-213ENST00000563842 MINPP1Q9UNW1 487 aa16.87■□□□□ 0.29
CLK3-213ENST00000563842 RIMBP2O15034 1052 aa16.86■□□□□ 0.29
CLK3-213ENST00000563842 TAF7LQ5H9L4 462 aa16.86■□□□□ 0.29
CLK3-213ENST00000563842 PNMA8AQ86V59 439 aaPredicted RBP16.86■□□□□ 0.29
CLK3-213ENST00000563842 TAF1DQ9H5J8 278 aaPredicted RBP16.86■□□□□ 0.29
CLK3-213ENST00000563842 HDAC5Q9UQL6 1122 aa16.86■□□□□ 0.29
CLK3-213ENST00000563842 NBPF7P0C2Y1 421 aaPredicted RBP16.85■□□□□ 0.29
CLK3-213ENST00000563842 EPHX2P34913 555 aa16.85■□□□□ 0.29
CLK3-213ENST00000563842 CXCL9Q07325 125 aa16.85■□□□□ 0.29
CLK3-213ENST00000563842 LEMD3Q9Y2U8 911 aa16.85■□□□□ 0.29
CLK3-213ENST00000563842 PSME4Q14997 1843 aa16.84■□□□□ 0.29
CLK3-213ENST00000563842 TNS4Q8IZW8 715 aa16.84■□□□□ 0.29
CLK3-213ENST00000563842 SUCLG2Q96I99 432 aa16.84■□□□□ 0.29
CLK3-213ENST00000563842 DBNDD1Q9H9R9 158 aa16.84■□□□□ 0.29
CLK3-213ENST00000563842 ECE2O60344 883 aa16.83■□□□□ 0.28
CLK3-213ENST00000563842 RAD17O75943 681 aa16.83■□□□□ 0.28
CLK3-213ENST00000563842 EPHA10Q5JZY3 1008 aa16.83■□□□□ 0.28
CLK3-213ENST00000563842 COL13A1Q5TAT6 717 aaPredicted RBP16.83■□□□□ 0.28
CLK3-213ENST00000563842 CHADLQ6NUI6 762 aa16.83■□□□□ 0.28
CLK3-213ENST00000563842 LDHDQ86WU2 507 aa16.83■□□□□ 0.28
CLK3-213ENST00000563842 USP44Q9H0E7 712 aa16.83■□□□□ 0.28
CLK3-213ENST00000563842 A0A1B0GUL6 1792 aa16.82■□□□□ 0.28
CLK3-213ENST00000563842 MED23Q9ULK4 1368 aa16.82■□□□□ 0.28
CLK3-213ENST00000563842 KCNJ4P48050 445 aa16.82■□□□□ 0.28
CLK3-213ENST00000563842 DOK7Q18PE1 504 aa16.82■□□□□ 0.28
CLK3-213ENST00000563842 EAPPQ56P03 285 aaPredicted RBP16.82■□□□□ 0.28
CLK3-213ENST00000563842 LDHAL6AQ6ZMR3 332 aa16.82■□□□□ 0.28
CLK3-213ENST00000563842 SCN9AQ15858 1988 aa16.82■□□□□ 0.28
CLK3-213ENST00000563842 YDJCA8MPS7 323 aa16.81■□□□□ 0.28
CLK3-213ENST00000563842 SCNN1DP51172 638 aa16.81■□□□□ 0.28
CLK3-213ENST00000563842 CHRNDQ07001 517 aa16.81■□□□□ 0.28
CLK3-213ENST00000563842 RABL6Q3YEC7 729 aaPredicted RBP16.81■□□□□ 0.28
CLK3-213ENST00000563842 PODNQ7Z5L7 613 aa16.81■□□□□ 0.28
CLK3-213ENST00000563842 GPR101Q96P66 508 aaPredicted RBP16.81■□□□□ 0.28
CLK3-213ENST00000563842 BICC1Q9H694 974 aaKnown RBP16.81■□□□□ 0.28
CLK3-213ENST00000563842 CNNM1Q9NRU3 951 aa16.81■□□□□ 0.28
CLK3-213ENST00000563842 CLEC11AQ9Y240 323 aa16.81■□□□□ 0.28
CLK3-213ENST00000563842 ZNF804BA4D1E1 1349 aa16.8■□□□□ 0.28
CLK3-213ENST00000563842 UBTFL1P0CB47 393 aaPredicted RBP16.8■□□□□ 0.28
CLK3-213ENST00000563842 RPS12P25398 132 aaKnown RBP16.8■□□□□ 0.28
CLK3-213ENST00000563842 ATF7IPQ6VMQ6 1270 aa16.8■□□□□ 0.28
CLK3-213ENST00000563842 USP50Q70EL3 339 aaPredicted RBP16.8■□□□□ 0.28
CLK3-213ENST00000563842 DNAJC5GQ8N7S2 189 aa16.8■□□□□ 0.28
CLK3-213ENST00000563842 FRAT1Q92837 279 aaPredicted RBP16.8■□□□□ 0.28
CLK3-213ENST00000563842 KAZALD1Q96I82 304 aa16.8■□□□□ 0.28
CLK3-213ENST00000563842 ADARB2Q9NS39 739 aaKnown RBP16.8■□□□□ 0.28
CLK3-213ENST00000563842 GPRC5DQ9NZD1 345 aa16.8■□□□□ 0.28
CLK3-213ENST00000563842 PSMD14O00487 310 aa16.79■□□□□ 0.28
CLK3-213ENST00000563842 BCAR3O75815 825 aa16.79■□□□□ 0.28
CLK3-213ENST00000563842 EPS15P42566 896 aa16.79■□□□□ 0.28
CLK3-213ENST00000563842 GMPSP49915 693 aaPredicted RBP16.79■□□□□ 0.28
CLK3-213ENST00000563842 INTS3Q68E01 1043 aaKnown RBP16.79■□□□□ 0.28
CLK3-213ENST00000563842 DPF2Q92785 391 aa16.79■□□□□ 0.28
CLK3-213ENST00000563842 COA1Q9GZY4 146 aa16.79■□□□□ 0.28
CLK3-213ENST00000563842 ADAMTSL1Q8N6G6 1762 aa16.79■□□□□ 0.28
CLK3-213ENST00000563842 H7C1D1 291 aa16.78■□□□□ 0.28
CLK3-213ENST00000563842 ZKSCAN2Q63HK3 967 aa16.78■□□□□ 0.28
CLK3-213ENST00000563842 ZNF594Q96JF6 807 aaPredicted RBP16.78■□□□□ 0.28
CLK3-213ENST00000563842 GNAI3P08754 354 aa16.77■□□□□ 0.28
CLK3-213ENST00000563842 VIL1P09327 827 aaKnown RBP16.77■□□□□ 0.28
CLK3-213ENST00000563842 POTEIP0CG38 1075 aa16.77■□□□□ 0.28
CLK3-213ENST00000563842 POTEJP0CG39 1038 aa16.77■□□□□ 0.28
CLK3-213ENST00000563842 ANKRD44Q8N8A2 993 aa16.77■□□□□ 0.28
CLK3-213ENST00000563842 CNOT7Q9UIV1 285 aaKnown RBP16.77■□□□□ 0.28
CLK3-213ENST00000563842 TRIM27P14373 513 aa16.76■□□□□ 0.27
CLK3-213ENST00000563842 C15orf52Q6ZUT6 534 aaKnown RBP16.76■□□□□ 0.27
CLK3-213ENST00000563842 POLR2AP24928 1970 aaKnown RBP16.76■□□□□ 0.27
CLK3-213ENST00000563842 MROH5Q6ZUA9 1318 aa16.75■□□□□ 0.27
CLK3-213ENST00000563842 USP17L3A6NCW0 530 aa16.75■□□□□ 0.27
CLK3-213ENST00000563842 USP17L4A6NCW7 530 aa16.75■□□□□ 0.27
CLK3-213ENST00000563842 PLIN1O60240 522 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms