RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 HUNKP57058 714 aa24.56■■□□□ 1.52
VPS35-202ENST00000561713 GPSM2P81274 684 aa24.56■■□□□ 1.52
VPS35-202ENST00000561713 MLLT1Q03111 559 aaPredicted RBP24.56■■□□□ 1.52
VPS35-202ENST00000561713 CALD1Q05682 793 aaKnown RBP24.56■■□□□ 1.52
VPS35-202ENST00000561713 MYH3P11055 1940 aa24.56■■□□□ 1.52
VPS35-202ENST00000561713 CASP8AP2Q9UKL3 1982 aa24.55■■□□□ 1.52
VPS35-202ENST00000561713 RGS19P49795 217 aa24.55■■□□□ 1.52
VPS35-202ENST00000561713 GOLGA2Q08379 1002 aa24.55■■□□□ 1.52
VPS35-202ENST00000561713 DOK7Q18PE1 504 aa24.55■■□□□ 1.52
VPS35-202ENST00000561713 TSPYL6Q8N831 410 aa24.55■■□□□ 1.52
VPS35-202ENST00000561713 NOGQ13253 232 aa24.54■■□□□ 1.52
VPS35-202ENST00000561713 KRT26Q7Z3Y9 468 aa24.54■■□□□ 1.52
VPS35-202ENST00000561713 RIC3Q7Z5B4 369 aa24.54■■□□□ 1.52
VPS35-202ENST00000561713 ECE2O60344 883 aa24.53■■□□□ 1.52
VPS35-202ENST00000561713 RBM26Q5T8P6 1007 aaKnown RBP24.53■■□□□ 1.52
VPS35-202ENST00000561713 MYD88Q99836 296 aa24.53■■□□□ 1.52
VPS35-202ENST00000561713 RTL9Q8NET4 1388 aa24.53■■□□□ 1.52
VPS35-202ENST00000561713 JARID2Q92833 1246 aaPredicted RBP24.52■■□□□ 1.52
VPS35-202ENST00000561713 ADM5C9JUS6 153 aa24.51■■□□□ 1.51
VPS35-202ENST00000561713 IRS4O14654 1257 aaPredicted RBP24.51■■□□□ 1.51
VPS35-202ENST00000561713 RPS12P25398 132 aaKnown RBP24.51■■□□□ 1.51
VPS35-202ENST00000561713 TBC1D16Q8TBP0 767 aa24.51■■□□□ 1.51
VPS35-202ENST00000561713 FAM155AB1AL88 458 aaPredicted RBP24.5■■□□□ 1.51
VPS35-202ENST00000561713 RPS8P62241 208 aaKnown RBP24.5■■□□□ 1.51
VPS35-202ENST00000561713 DGKZQ13574 1117 aa24.5■■□□□ 1.51
VPS35-202ENST00000561713 DCPSQ96C86 337 aaKnown RBP24.5■■□□□ 1.51
VPS35-202ENST00000561713 EYA3Q99504 573 aa24.5■■□□□ 1.51
VPS35-202ENST00000561713 GBA2Q9HCG7 927 aaPredicted RBP24.5■■□□□ 1.51
VPS35-202ENST00000561713 MRS2Q9HD23 443 aa24.5■■□□□ 1.51
VPS35-202ENST00000561713 SCN9AQ15858 1988 aa24.5■■□□□ 1.51
VPS35-202ENST00000561713 RGMBQ6NW40 437 aa24.49■■□□□ 1.51
VPS35-202ENST00000561713 TNRC18O15417 2968 aaPredicted RBP24.49■■□□□ 1.51
VPS35-202ENST00000561713 POLR2AP24928 1970 aaKnown RBP24.49■■□□□ 1.51
VPS35-202ENST00000561713 SLC34A2O95436 690 aa24.48■■□□□ 1.51
VPS35-202ENST00000561713 TRIM28Q13263 835 aaKnown RBP24.48■■□□□ 1.51
VPS35-202ENST00000561713 C2orf69Q8N8R5 385 aa24.48■■□□□ 1.51
VPS35-202ENST00000561713 WWC1Q8IX03 1113 aa24.47■■□□□ 1.51
VPS35-202ENST00000561713 CCDC85AQ96PX6 553 aaPredicted RBP24.47■■□□□ 1.51
VPS35-202ENST00000561713 SEC31BQ9NQW1 1179 aa24.47■■□□□ 1.51
VPS35-202ENST00000561713 ASTN2O75129 1339 aaPredicted RBP24.46■■□□□ 1.51
VPS35-202ENST00000561713 VIL1P09327 827 aaKnown RBP24.46■■□□□ 1.51
VPS35-202ENST00000561713 ZEB1P37275 1124 aaPredicted RBP24.46■■□□□ 1.51
VPS35-202ENST00000561713 KIF4BQ2VIQ3 1234 aa24.46■■□□□ 1.51
VPS35-202ENST00000561713 CCDC30Q5VVM6 783 aa24.46■■□□□ 1.51
VPS35-202ENST00000561713 ZBTB38Q8NAP3 1195 aaPredicted RBP24.46■■□□□ 1.51
VPS35-202ENST00000561713 ZC3H12CQ9C0D7 883 aaKnown RBP24.46■■□□□ 1.51
VPS35-202ENST00000561713 ZNF157P51786 506 aaPredicted RBP24.45■■□□□ 1.5
VPS35-202ENST00000561713 KIF23Q02241 960 aaPredicted RBP24.45■■□□□ 1.5
VPS35-202ENST00000561713 CCDC102AQ96A19 550 aa24.45■■□□□ 1.5
VPS35-202ENST00000561713 GGA3Q9NZ52 723 aa24.45■■□□□ 1.5
VPS35-202ENST00000561713 PODXL2Q9NZ53 605 aa24.45■■□□□ 1.5
VPS35-202ENST00000561713 MAP3K2Q9Y2U5 619 aa24.45■■□□□ 1.5
VPS35-202ENST00000561713 SALL2Q9Y467 1007 aaPredicted RBP24.45■■□□□ 1.5
VPS35-202ENST00000561713 CACNA1FO60840 1977 aa24.45■■□□□ 1.5
VPS35-202ENST00000561713 ZNF316A6NFI3 1004 aaPredicted RBP24.44■■□□□ 1.5
VPS35-202ENST00000561713 METTL22Q9BUU2 404 aaPredicted RBP24.44■■□□□ 1.5
VPS35-202ENST00000561713 ANKIB1Q9P2G1 1089 aa24.44■■□□□ 1.5
VPS35-202ENST00000561713 PSME4Q14997 1843 aa24.43■■□□□ 1.5
VPS35-202ENST00000561713 UFL1O94874 794 aa24.43■■□□□ 1.5
VPS35-202ENST00000561713 SULF1Q8IWU6 871 aa24.43■■□□□ 1.5
VPS35-202ENST00000561713 CWC25Q9NXE8 425 aaPredicted RBP24.43■■□□□ 1.5
VPS35-202ENST00000561713 G3V3G9 751 aa24.42■■□□□ 1.5
VPS35-202ENST00000561713 ANP32CO43423 234 aa24.42■■□□□ 1.5
VPS35-202ENST00000561713 DDX58O95786 925 aaKnown RBP24.42■■□□□ 1.5
VPS35-202ENST00000561713 CCDC27Q2M243 656 aa24.42■■□□□ 1.5
VPS35-202ENST00000561713 DCAF8Q5TAQ9 597 aa24.42■■□□□ 1.5
VPS35-202ENST00000561713 G2E3Q7L622 706 aa24.42■■□□□ 1.5
VPS35-202ENST00000561713 RNF186Q9NXI6 227 aa24.42■■□□□ 1.5
VPS35-202ENST00000561713 SAGE1Q9NXZ1 904 aa24.42■■□□□ 1.5
VPS35-202ENST00000561713 FANCIQ9NVI1 1328 aa24.41■■□□□ 1.5
VPS35-202ENST00000561713 TRPA1O75762 1119 aa24.41■■□□□ 1.5
VPS35-202ENST00000561713 PCCAP05165 728 aaPredicted RBP24.41■■□□□ 1.5
VPS35-202ENST00000561713 TWISTNBQ3B726 338 aaPredicted RBP24.41■■□□□ 1.5
VPS35-202ENST00000561713 CCDC191Q8NCU4 936 aa24.41■■□□□ 1.5
VPS35-202ENST00000561713 GGA1Q9UJY5 639 aa24.41■■□□□ 1.5
VPS35-202ENST00000561713 PI4KAP2A4QPH2 592 aa24.4■■□□□ 1.5
VPS35-202ENST00000561713 PI4KAP1Q8N8J0 262 aa24.4■■□□□ 1.5
VPS35-202ENST00000561713 CDCA5Q96FF9 252 aa24.4■■□□□ 1.5
VPS35-202ENST00000561713 STK31Q9BXU1 1019 aa24.4■■□□□ 1.5
VPS35-202ENST00000561713 IGKV5-2P06315 115 aa24.39■■□□□ 1.49
VPS35-202ENST00000561713 SLC10A3P09131 477 aa24.39■■□□□ 1.49
VPS35-202ENST00000561713 ZNF280AP59817 542 aaPredicted RBP24.39■■□□□ 1.49
VPS35-202ENST00000561713 SCARF1Q14162 830 aa24.39■■□□□ 1.49
VPS35-202ENST00000561713 ANGEL2Q5VTE6 544 aaKnown RBP24.39■■□□□ 1.49
VPS35-202ENST00000561713 RSBN1LQ6PCB5 846 aaPredicted RBP24.39■■□□□ 1.49
VPS35-202ENST00000561713 CSRNP1Q96S65 589 aa24.39■■□□□ 1.49
VPS35-202ENST00000561713 CWF19L2Q2TBE0 894 aaKnown RBP24.38■■□□□ 1.49
VPS35-202ENST00000561713 CCDC152Q4G0S7 254 aa24.38■■□□□ 1.49
VPS35-202ENST00000561713 KSR2Q6VAB6 950 aa24.38■■□□□ 1.49
VPS35-202ENST00000561713 PDE8AO60658 829 aa24.37■■□□□ 1.49
VPS35-202ENST00000561713 HSP90B1P14625 803 aaKnown RBP24.37■■□□□ 1.49
VPS35-202ENST00000561713 AGBL3Q8NEM8 1001 aa24.37■■□□□ 1.49
VPS35-202ENST00000561713 ZNF646O15015 1829 aaPredicted RBP24.36■■□□□ 1.49
VPS35-202ENST00000561713 A0A1B0GUL6 1792 aa24.36■■□□□ 1.49
VPS35-202ENST00000561713 IL16Q14005 1332 aa24.35■■□□□ 1.49
VPS35-202ENST00000561713 GMLQ99445 158 aa24.35■■□□□ 1.49
VPS35-202ENST00000561713 ZNF609O15014 1411 aa24.35■■□□□ 1.49
VPS35-202ENST00000561713 WTIPA6NIX2 430 aaPredicted RBP24.34■■□□□ 1.49
VPS35-202ENST00000561713 USP17L8P0C7I0 530 aa24.34■■□□□ 1.49
VPS35-202ENST00000561713 CTSWP56202 376 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms