RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 ECM29Q5VYK3 1845 aa12.49□□□□□ -0.41
HERC1-209ENST00000560519 LAMB1P07942 1786 aa12.49□□□□□ -0.41
HERC1-209ENST00000560519 RIMBP2O15034 1052 aa12.49□□□□□ -0.41
HERC1-209ENST00000560519 NEUROD2Q15784 382 aa12.49□□□□□ -0.41
HERC1-209ENST00000560519 TBC1D10BQ4KMP7 808 aaPredicted RBP12.49□□□□□ -0.41
HERC1-209ENST00000560519 SAMD7Q7Z3H4 446 aa12.49□□□□□ -0.41
HERC1-209ENST00000560519 USP48Q86UV5 1035 aa12.49□□□□□ -0.41
HERC1-209ENST00000560519 REM2Q8IYK8 340 aaPredicted RBP12.49□□□□□ -0.41
HERC1-209ENST00000560519 CELF1Q92879 486 aaKnown RBP12.49□□□□□ -0.41
HERC1-209ENST00000560519 FAM89AQ96GI7 184 aa12.49□□□□□ -0.41
HERC1-209ENST00000560519 ZC3H12CQ9C0D7 883 aaKnown RBP12.49□□□□□ -0.41
HERC1-209ENST00000560519 RTL9Q8NET4 1388 aa12.48□□□□□ -0.41
HERC1-209ENST00000560519 IRS4O14654 1257 aaPredicted RBP12.48□□□□□ -0.41
HERC1-209ENST00000560519 GPSM2P81274 684 aa12.48□□□□□ -0.41
HERC1-209ENST00000560519 CALD1Q05682 793 aaKnown RBP12.48□□□□□ -0.41
HERC1-209ENST00000560519 TRIM28Q13263 835 aaKnown RBP12.48□□□□□ -0.41
HERC1-209ENST00000560519 TBC1D16Q8TBP0 767 aa12.48□□□□□ -0.41
HERC1-209ENST00000560519 CHMP4AQ9BY43 222 aa12.48□□□□□ -0.41
HERC1-209ENST00000560519 GGA3Q9NZ52 723 aa12.48□□□□□ -0.41
HERC1-209ENST00000560519 PODXL2Q9NZ53 605 aa12.48□□□□□ -0.41
HERC1-209ENST00000560519 SHTN1A0MZ66 631 aa12.47□□□□□ -0.41
HERC1-209ENST00000560519 ADM5C9JUS6 153 aa12.47□□□□□ -0.41
HERC1-209ENST00000560519 ATP5J2-PTCD1G3V325 749 aa12.47□□□□□ -0.41
HERC1-209ENST00000560519 ZNF157P51786 506 aaPredicted RBP12.47□□□□□ -0.41
HERC1-209ENST00000560519 KRT24Q2M2I5 525 aa12.47□□□□□ -0.41
HERC1-209ENST00000560519 CCDC152Q4G0S7 254 aa12.47□□□□□ -0.41
HERC1-209ENST00000560519 RIC3Q7Z5B4 369 aa12.47□□□□□ -0.41
HERC1-209ENST00000560519 CCDC146Q8IYE0 955 aa12.47□□□□□ -0.41
HERC1-209ENST00000560519 ZBTB38Q8NAP3 1195 aaPredicted RBP12.47□□□□□ -0.41
HERC1-209ENST00000560519 POLLQ9UGP5 575 aa12.47□□□□□ -0.41
HERC1-209ENST00000560519 PITPNM2Q9BZ72 1349 aa12.46□□□□□ -0.41
HERC1-209ENST00000560519 FAM155AB1AL88 458 aaPredicted RBP12.46□□□□□ -0.41
HERC1-209ENST00000560519 UFL1O94874 794 aa12.46□□□□□ -0.41
HERC1-209ENST00000560519 SLC10A3P09131 477 aa12.46□□□□□ -0.41
HERC1-209ENST00000560519 RPS8P62241 208 aaKnown RBP12.46□□□□□ -0.41
HERC1-209ENST00000560519 FKBP1BP68106 108 aa12.46□□□□□ -0.41
HERC1-209ENST00000560519 AGBL3Q8NEM8 1001 aa12.46□□□□□ -0.41
HERC1-209ENST00000560519 ANKIB1Q9P2G1 1089 aa12.46□□□□□ -0.41
HERC1-209ENST00000560519 GGA1Q9UJY5 639 aa12.46□□□□□ -0.41
HERC1-209ENST00000560519 TRIM35Q9UPQ4 493 aa12.46□□□□□ -0.41
HERC1-209ENST00000560519 A0A1B0GUL6 1792 aa12.46□□□□□ -0.42
HERC1-209ENST00000560519 XDHP47989 1333 aa12.45□□□□□ -0.42
HERC1-209ENST00000560519 DDX58O95786 925 aaKnown RBP12.45□□□□□ -0.42
HERC1-209ENST00000560519 VIL1P09327 827 aaKnown RBP12.45□□□□□ -0.42
HERC1-209ENST00000560519 DOK7Q18PE1 504 aa12.45□□□□□ -0.42
HERC1-209ENST00000560519 RTL5Q5HYW3 569 aaPredicted RBP12.45□□□□□ -0.42
HERC1-209ENST00000560519 RBM26Q5T8P6 1007 aaKnown RBP12.45□□□□□ -0.42
HERC1-209ENST00000560519 DUSP27Q5VZP5 1158 aa12.45□□□□□ -0.42
HERC1-209ENST00000560519 CCDC191Q8NCU4 936 aa12.45□□□□□ -0.42
HERC1-209ENST00000560519 MED23Q9ULK4 1368 aa12.44□□□□□ -0.42
HERC1-209ENST00000560519 PDE8AO60658 829 aa12.44□□□□□ -0.42
HERC1-209ENST00000560519 EGFRP00533 1210 aa12.44□□□□□ -0.42
HERC1-209ENST00000560519 KIF23Q02241 960 aaPredicted RBP12.44□□□□□ -0.42
HERC1-209ENST00000560519 RSBN1LQ6PCB5 846 aaPredicted RBP12.44□□□□□ -0.42
HERC1-209ENST00000560519 CDCA5Q96FF9 252 aa12.44□□□□□ -0.42
HERC1-209ENST00000560519 MYO3BQ8WXR4 1341 aa12.43□□□□□ -0.42
HERC1-209ENST00000560519 COL1A1P02452 1464 aaPredicted RBP12.43□□□□□ -0.42
HERC1-209ENST00000560519 PCCAP05165 728 aaPredicted RBP12.43□□□□□ -0.42
HERC1-209ENST00000560519 ZNF280AP59817 542 aaPredicted RBP12.43□□□□□ -0.42
HERC1-209ENST00000560519 ANGEL2Q5VTE6 544 aaKnown RBP12.43□□□□□ -0.42
HERC1-209ENST00000560519 ANKRD18AQ8IVF6 992 aa12.43□□□□□ -0.42
HERC1-209ENST00000560519 ZNF428Q96B54 188 aa12.43□□□□□ -0.42
HERC1-209ENST00000560519 CDC5LQ99459 802 aaKnown RBP12.43□□□□□ -0.42
HERC1-209ENST00000560519 MBIPQ9NS73 344 aa12.43□□□□□ -0.42
HERC1-209ENST00000560519 IFT57Q9NWB7 429 aa12.43□□□□□ -0.42
HERC1-209ENST00000560519 CWC25Q9NXE8 425 aaPredicted RBP12.43□□□□□ -0.42
HERC1-209ENST00000560519 USP17L8P0C7I0 530 aa12.42□□□□□ -0.42
HERC1-209ENST00000560519 ATP2B4P23634 1241 aa12.42□□□□□ -0.42
HERC1-209ENST00000560519 GNAI1P63096 354 aa12.42□□□□□ -0.42
HERC1-209ENST00000560519 PODNQ7Z5L7 613 aa12.42□□□□□ -0.42
HERC1-209ENST00000560519 RASAL3Q86YV0 1011 aa12.42□□□□□ -0.42
HERC1-209ENST00000560519 MYD88Q99836 296 aa12.42□□□□□ -0.42
HERC1-209ENST00000560519 MYOZ2Q9NPC6 264 aa12.42□□□□□ -0.42
HERC1-209ENST00000560519 RNF186Q9NXI6 227 aa12.42□□□□□ -0.42
HERC1-209ENST00000560519 CACNA1FO60840 1977 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 USP17L3A6NCW0 530 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 USP17L4A6NCW7 530 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 TRPA1O75762 1119 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 NF2P35240 595 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 MMP14P50281 582 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 USP17L1Q7RTZ2 530 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 CTU1Q7Z7A3 348 aaKnown RBP12.41□□□□□ -0.42
HERC1-209ENST00000560519 ARAP2Q8WZ64 1704 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 ZIC5Q96T25 663 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 PCDH10Q9P2E7 1040 aa12.41□□□□□ -0.42
HERC1-209ENST00000560519 CTSWP56202 376 aa12.4□□□□□ -0.42
HERC1-209ENST00000560519 SCARF1Q14162 830 aa12.4□□□□□ -0.42
HERC1-209ENST00000560519 PKN2Q16513 984 aaKnown RBP12.4□□□□□ -0.42
HERC1-209ENST00000560519 CCDC30Q5VVM6 783 aa12.4□□□□□ -0.42
HERC1-209ENST00000560519 OGFOD1Q8N543 542 aa12.4□□□□□ -0.42
HERC1-209ENST00000560519 SEC31BQ9NQW1 1179 aa12.4□□□□□ -0.42
HERC1-209ENST00000560519 KCNQ5Q9NR82 932 aa12.4□□□□□ -0.42
HERC1-209ENST00000560519 RBBP6Q7Z6E9 1792 aaKnown RBP12.4□□□□□ -0.42
HERC1-209ENST00000560519 ZNF853P0CG23 659 aa12.39□□□□□ -0.43
HERC1-209ENST00000560519 NEXNQ0ZGT2 675 aa12.39□□□□□ -0.43
HERC1-209ENST00000560519 DLK2Q6UY11 383 aa12.39□□□□□ -0.43
HERC1-209ENST00000560519 METTL22Q9BUU2 404 aaPredicted RBP12.39□□□□□ -0.43
HERC1-209ENST00000560519 PHAXQ9H814 394 aaKnown RBP12.39□□□□□ -0.43
HERC1-209ENST00000560519 ADAMTS8Q9UP79 889 aa12.39□□□□□ -0.43
HERC1-209ENST00000560519 ASTN2O75129 1339 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms