RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 ZC3H12CQ9C0D7 883 aaKnown RBP23.31■■□□□ 1.32
TSPAN3-208ENST00000560514 POLLQ9UGP5 575 aa23.31■■□□□ 1.32
TSPAN3-208ENST00000560514 LMOD3Q0VAK6 560 aa23.3■■□□□ 1.32
TSPAN3-208ENST00000560514 SF3B3Q15393 1217 aaKnown RBP23.29■■□□□ 1.32
TSPAN3-208ENST00000560514 CDCA5Q96FF9 252 aa23.29■■□□□ 1.32
TSPAN3-208ENST00000560514 KCNQ5Q9NR82 932 aa23.29■■□□□ 1.32
TSPAN3-208ENST00000560514 HDAC9Q9UKV0 1011 aa23.29■■□□□ 1.32
TSPAN3-208ENST00000560514 FAM89AQ96GI7 184 aa23.28■■□□□ 1.32
TSPAN3-208ENST00000560514 RTL9Q8NET4 1388 aa23.27■■□□□ 1.32
TSPAN3-208ENST00000560514 PKN2Q16513 984 aaKnown RBP23.27■■□□□ 1.32
TSPAN3-208ENST00000560514 PLBD2Q8NHP8 589 aa23.27■■□□□ 1.32
TSPAN3-208ENST00000560514 TBC1D16Q8TBP0 767 aa23.27■■□□□ 1.32
TSPAN3-208ENST00000560514 VIL1P09327 827 aaKnown RBP23.26■■□□□ 1.31
TSPAN3-208ENST00000560514 FKBP1BP68106 108 aa23.26■■□□□ 1.31
TSPAN3-208ENST00000560514 RASAL3Q86YV0 1011 aa23.26■■□□□ 1.31
TSPAN3-208ENST00000560514 RPS8P62241 208 aaKnown RBP23.25■■□□□ 1.31
TSPAN3-208ENST00000560514 ANGEL2Q5VTE6 544 aaKnown RBP23.25■■□□□ 1.31
TSPAN3-208ENST00000560514 ANKRD13DQ6ZTN6 518 aa23.25■■□□□ 1.31
TSPAN3-208ENST00000560514 CHPF2Q9P2E5 772 aa23.25■■□□□ 1.31
TSPAN3-208ENST00000560514 ANKIB1Q9P2G1 1089 aa23.25■■□□□ 1.31
TSPAN3-208ENST00000560514 HPS5Q9UPZ3 1129 aa23.25■■□□□ 1.31
TSPAN3-208ENST00000560514 ATP5J2-PTCD1G3V325 749 aa23.24■■□□□ 1.31
TSPAN3-208ENST00000560514 SCARF1Q14162 830 aa23.24■■□□□ 1.31
TSPAN3-208ENST00000560514 RTL5Q5HYW3 569 aaPredicted RBP23.24■■□□□ 1.31
TSPAN3-208ENST00000560514 ASTN2O75129 1339 aaPredicted RBP23.24■■□□□ 1.31
TSPAN3-208ENST00000560514 IRS4O14654 1257 aaPredicted RBP23.23■■□□□ 1.31
TSPAN3-208ENST00000560514 UFL1O94874 794 aa23.23■■□□□ 1.31
TSPAN3-208ENST00000560514 HSP90B1P14625 803 aaKnown RBP23.23■■□□□ 1.31
TSPAN3-208ENST00000560514 AGBL3Q8NEM8 1001 aa23.23■■□□□ 1.31
TSPAN3-208ENST00000560514 ISCA1Q9BUE6 129 aa23.23■■□□□ 1.31
TSPAN3-208ENST00000560514 GGA1Q9UJY5 639 aa23.23■■□□□ 1.31
TSPAN3-208ENST00000560514 LAS1LQ9Y4W2 734 aaKnown RBP23.23■■□□□ 1.31
TSPAN3-208ENST00000560514 SCN9AQ15858 1988 aa23.23■■□□□ 1.31
TSPAN3-208ENST00000560514 HDGFL1Q5TGJ6 251 aa23.22■■□□□ 1.31
TSPAN3-208ENST00000560514 PAPPA2Q9BXP8 1791 aa23.22■■□□□ 1.31
TSPAN3-208ENST00000560514 TMPOP42166 694 aaKnown RBP23.21■■□□□ 1.31
TSPAN3-208ENST00000560514 RSBN1LQ6PCB5 846 aaPredicted RBP23.21■■□□□ 1.31
TSPAN3-208ENST00000560514 PODXL2Q9NZ53 605 aa23.21■■□□□ 1.31
TSPAN3-208ENST00000560514 ZNF280AP59817 542 aaPredicted RBP23.2■■□□□ 1.3
TSPAN3-208ENST00000560514 TTLL12Q14166 644 aaPredicted RBP23.2■■□□□ 1.3
TSPAN3-208ENST00000560514 DBF4Q9UBU7 674 aaPredicted RBP23.2■■□□□ 1.3
TSPAN3-208ENST00000560514 PITPNM2Q9BZ72 1349 aa23.19■■□□□ 1.3
TSPAN3-208ENST00000560514 USP17L8P0C7I0 530 aa23.19■■□□□ 1.3
TSPAN3-208ENST00000560514 KRT24Q2M2I5 525 aa23.19■■□□□ 1.3
TSPAN3-208ENST00000560514 ZNF296Q8WUU4 475 aaPredicted RBP23.19■■□□□ 1.3
TSPAN3-208ENST00000560514 MYOZ2Q9NPC6 264 aa23.19■■□□□ 1.3
TSPAN3-208ENST00000560514 TBC1D8O95759 1140 aa23.18■■□□□ 1.3
TSPAN3-208ENST00000560514 NEUROD2Q15784 382 aa23.18■■□□□ 1.3
TSPAN3-208ENST00000560514 HYPKQ9NX55 129 aa23.17■■□□□ 1.3
TSPAN3-208ENST00000560514 COL4A1P02462 1669 aa23.16■■□□□ 1.3
TSPAN3-208ENST00000560514 UBE2Q2LH0YL09 131 aa23.16■■□□□ 1.3
TSPAN3-208ENST00000560514 CHL1O00533 1208 aa23.16■■□□□ 1.3
TSPAN3-208ENST00000560514 HOXB7P09629 217 aa23.16■■□□□ 1.3
TSPAN3-208ENST00000560514 NF2P35240 595 aa23.16■■□□□ 1.3
TSPAN3-208ENST00000560514 TRIM28Q13263 835 aaKnown RBP23.16■■□□□ 1.3
TSPAN3-208ENST00000560514 CCDC152Q4G0S7 254 aa23.16■■□□□ 1.3
TSPAN3-208ENST00000560514 SEC31BQ9NQW1 1179 aa23.16■■□□□ 1.3
TSPAN3-208ENST00000560514 ZNF609O15014 1411 aa23.16■■□□□ 1.3
TSPAN3-208ENST00000560514 PSME4Q14997 1843 aa23.15■■□□□ 1.3
TSPAN3-208ENST00000560514 MOB2Q70IA6 237 aa23.15■■□□□ 1.3
TSPAN3-208ENST00000560514 RIC3Q7Z5B4 369 aa23.15■■□□□ 1.3
TSPAN3-208ENST00000560514 ZBTB38Q8NAP3 1195 aaPredicted RBP23.15■■□□□ 1.3
TSPAN3-208ENST00000560514 GCC1Q96CN9 775 aa23.15■■□□□ 1.3
TSPAN3-208ENST00000560514 USP17L3A6NCW0 530 aa23.14■■□□□ 1.29
TSPAN3-208ENST00000560514 USP17L4A6NCW7 530 aa23.14■■□□□ 1.29
TSPAN3-208ENST00000560514 GPR25O00155 361 aa23.14■■□□□ 1.29
TSPAN3-208ENST00000560514 GOLGA2Q08379 1002 aa23.14■■□□□ 1.29
TSPAN3-208ENST00000560514 FBXO46Q6PJ61 603 aaPredicted RBP23.14■■□□□ 1.29
TSPAN3-208ENST00000560514 USP17L1Q7RTZ2 530 aa23.14■■□□□ 1.29
TSPAN3-208ENST00000560514 SREBF2Q12772 1141 aa23.13■■□□□ 1.29
TSPAN3-208ENST00000560514 PODNQ7Z5L7 613 aa23.13■■□□□ 1.29
TSPAN3-208ENST00000560514 SCAF8Q9UPN6 1271 aaKnown RBP23.13■■□□□ 1.29
TSPAN3-208ENST00000560514 XDHP47989 1333 aa23.12■■□□□ 1.29
TSPAN3-208ENST00000560514 ATP2B4P23634 1241 aa23.12■■□□□ 1.29
TSPAN3-208ENST00000560514 TM4SF4P48230 202 aa23.12■■□□□ 1.29
TSPAN3-208ENST00000560514 MKRN3Q13064 507 aaKnown RBP23.12■■□□□ 1.29
TSPAN3-208ENST00000560514 ANKRD18AQ8IVF6 992 aa23.12■■□□□ 1.29
TSPAN3-208ENST00000560514 OGFOD1Q8N543 542 aa23.12■■□□□ 1.29
TSPAN3-208ENST00000560514 NOM1Q5C9Z4 860 aaKnown RBP23.11■■□□□ 1.29
TSPAN3-208ENST00000560514 PRAMEF18Q5VWM3 479 aa23.11■■□□□ 1.29
TSPAN3-208ENST00000560514 PDE8AO60658 829 aa23.1■■□□□ 1.29
TSPAN3-208ENST00000560514 FKTNO75072 461 aa23.1■■□□□ 1.29
TSPAN3-208ENST00000560514 CCDC85AQ96PX6 553 aaPredicted RBP23.1■■□□□ 1.29
TSPAN3-208ENST00000560514 GMLQ99445 158 aa23.1■■□□□ 1.29
TSPAN3-208ENST00000560514 DUSP27Q5VZP5 1158 aa23.09■■□□□ 1.29
TSPAN3-208ENST00000560514 ARMC9Q7Z3E5 817 aa23.09■■□□□ 1.29
TSPAN3-208ENST00000560514 CCDC146Q8IYE0 955 aa23.09■■□□□ 1.29
TSPAN3-208ENST00000560514 FBXW7Q969H0 707 aa23.09■■□□□ 1.29
TSPAN3-208ENST00000560514 NBPF9Q3BBW0 867 aa23.08■■□□□ 1.29
TSPAN3-208ENST00000560514 MYD88Q99836 296 aa23.08■■□□□ 1.29
TSPAN3-208ENST00000560514 PCCAP05165 728 aaPredicted RBP23.07■■□□□ 1.28
TSPAN3-208ENST00000560514 CCDC191Q8NCU4 936 aa23.07■■□□□ 1.28
TSPAN3-208ENST00000560514 CDC5LQ99459 802 aaKnown RBP23.07■■□□□ 1.28
TSPAN3-208ENST00000560514 MYO3BQ8WXR4 1341 aa23.07■■□□□ 1.28
TSPAN3-208ENST00000560514 CWC25Q9NXE8 425 aaPredicted RBP23.06■■□□□ 1.28
TSPAN3-208ENST00000560514 ALDH1A1P00352 501 aa23.05■■□□□ 1.28
TSPAN3-208ENST00000560514 WNT10BO00744 389 aa23.04■■□□□ 1.28
TSPAN3-208ENST00000560514 PRKG1Q13976 671 aa23.04■■□□□ 1.28
TSPAN3-208ENST00000560514 RALBP1Q15311 655 aa23.04■■□□□ 1.28
TSPAN3-208ENST00000560514 RUNDC1Q96C34 613 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms