RNA–Protein interactions for RNA: ENST00000559201.5

LRRC49-215, Transcript of leucine rich repeat containing 49, human

TSL 3

Gene LRRC49, Length 938 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC49-215	ENST00000559201	CNNM1	Q9NRU3	951 aa		12.86	□□□□□ -0.35
LRRC49-215	ENST00000559201	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	12.86	□□□□□ -0.35
LRRC49-215	ENST00000559201	RBM8A	Q9Y5S9	174 aa	Known RBP	12.86	□□□□□ -0.35
LRRC49-215	ENST00000559201	ITGB4	P16144	1822 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	AFDN	P55196	1824 aa	Known RBP	12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	MED23	Q9ULK4	1368 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	ONECUT3	O60422	494 aa	Predicted RBP	12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	TAF5L	O75529	589 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	UQCRFS1P1	P0C7P4	283 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	PTH1R	Q03431	593 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	ITPK1	Q13572	414 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	TTF1	Q15361	905 aa	Predicted RBP	12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	ATP2B3	Q16720	1220 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	CCDC152	Q4G0S7	254 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	METTL24	Q5JXM2	366 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	PRPF40B	Q6NWY9	871 aa	Known RBP	12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	CHMP4C	Q96CF2	233 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	ZNF594	Q96JF6	807 aa	Predicted RBP	12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	FAM227B	Q96M60	508 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	DNAJC2	Q99543	621 aa	Known RBP	12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	IL25	Q9H293	177 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	ZNF609	O15014	1411 aa		12.85	□□□□□ -0.35
LRRC49-215	ENST00000559201	CIC	Q96RK0	1608 aa	Predicted RBP	12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201	RNF113A	O15541	343 aa	Known RBP	12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201	HMGB1	P09429	215 aa	Known RBP	12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201	MEX3C	Q5U5Q3	659 aa	Known RBP	12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201	RUFY3	Q7L099	469 aa		12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201	XAGE2	Q96GT9	111 aa		12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201	TTC14	Q96N46	770 aa		12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201	DSCC1	Q9BVC3	393 aa		12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201	PUS3	Q9BZE2	481 aa	Known RBP	12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201	PDRG1	Q9NUG6	133 aa		12.84	□□□□□ -0.35
LRRC49-215	ENST00000559201		A0A0D9SFI3	127 aa		12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	SLC27A2	O14975	620 aa		12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	PDE8B	O95263	885 aa		12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	CYP2E1	P05181	493 aa	Predicted RBP	12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	ZMYM1	Q5SVZ6	1142 aa		12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	SUSD4	Q5VX71	490 aa		12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	RASEF	Q8IZ41	740 aa		12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	GJD4	Q96KN9	370 aa	Predicted RBP	12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	GREM2	Q9H772	168 aa		12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	TRPC5	Q9UL62	973 aa	Predicted RBP	12.83	□□□□□ -0.36
LRRC49-215	ENST00000559201	GOLIM4	O00461	696 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	TRAK2	O60296	914 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	RPS6KA4	O75676	772 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	CAST	P20810	708 aa	Known RBP	12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	IGHMBP2	P38935	993 aa	Known RBP	12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	SLC10A5	Q5PT55	438 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	BLOC1S2	Q6QNY1	142 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	LPIN2	Q92539	896 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	JAKMIP1	Q96N16	626 aa	Known RBP	12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	CDC5L	Q99459	802 aa	Known RBP	12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	NYX	Q9GZU5	481 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	FOXD4L1	Q9NU39	408 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	CTNNA3	Q9UI47	895 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	ISY1	Q9ULR0	285 aa	Known RBP	12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	ZNF831	Q5JPB2	1677 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	UBN2	Q6ZU65	1347 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	TJP1	Q07157	1748 aa		12.82	□□□□□ -0.36
LRRC49-215	ENST00000559201	KCNQ2	O43526	872 aa		12.81	□□□□□ -0.36
LRRC49-215	ENST00000559201	PUM3	Q15397	648 aa	Known RBP	12.81	□□□□□ -0.36
LRRC49-215	ENST00000559201	DDX46	Q7L014	1031 aa	Known RBP	12.81	□□□□□ -0.36
LRRC49-215	ENST00000559201	MPHOSPH8	Q99549	860 aa		12.81	□□□□□ -0.36
LRRC49-215	ENST00000559201	UPF3B	Q9BZI7	483 aa	Known RBP	12.81	□□□□□ -0.36
LRRC49-215	ENST00000559201	DOT1L	Q8TEK3	1739 aa		12.8	□□□□□ -0.36
LRRC49-215	ENST00000559201	BAG4	O95429	457 aa	Known RBP	12.8	□□□□□ -0.36
LRRC49-215	ENST00000559201	NTSR2	O95665	410 aa		12.8	□□□□□ -0.36
LRRC49-215	ENST00000559201	SLC5A1	P13866	664 aa		12.8	□□□□□ -0.36
LRRC49-215	ENST00000559201	AK2	P54819	239 aa		12.8	□□□□□ -0.36
LRRC49-215	ENST00000559201	SF3B3	Q15393	1217 aa	Known RBP	12.8	□□□□□ -0.36
LRRC49-215	ENST00000559201	NARF	Q9UHQ1	456 aa		12.8	□□□□□ -0.36
LRRC49-215	ENST00000559201	WDR33	Q9C0J8	1336 aa	Known RBP	12.8	□□□□□ -0.36
LRRC49-215	ENST00000559201	RREB1	Q92766	1687 aa		12.8	□□□□□ -0.36
LRRC49-215	ENST00000559201	RPS6KB1	P23443	525 aa		12.79	□□□□□ -0.36
LRRC49-215	ENST00000559201	VGLL2	Q8N8G2	317 aa		12.79	□□□□□ -0.36
LRRC49-215	ENST00000559201	LINC00116	Q8NCU8	138 aa		12.79	□□□□□ -0.36
LRRC49-215	ENST00000559201	RPAP1	Q9BWH6	1393 aa	Predicted RBP	12.79	□□□□□ -0.36
LRRC49-215	ENST00000559201	ZPR1	O75312	459 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	BRD1	O95696	1058 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	FGFR2	P21802	821 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	ARID4A	P29374	1257 aa	Predicted RBP	12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	FKBP4	Q02790	459 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	UBE3C	Q15386	1083 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	L1TD1	Q5T7N2	865 aa	Known RBP	12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	SYNE4	Q8N205	404 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	ZGPAT	Q8N5A5	531 aa	Known RBP	12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	APPBP2	Q92624	585 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	EDC3	Q96F86	508 aa	Known RBP	12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	CCDC85A	Q96PX6	553 aa	Predicted RBP	12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	NEK1	Q96PY6	1258 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	SMC3	Q9UQE7	1217 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	RTCB	Q9Y3I0	505 aa	Known RBP	12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	ATP6V1D	Q9Y5K8	247 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	SPEF2	Q9C093	1822 aa		12.78	□□□□□ -0.36
LRRC49-215	ENST00000559201	IGSF3	O75054	1194 aa		12.77	□□□□□ -0.37
LRRC49-215	ENST00000559201	HCLS1	P14317	486 aa	Predicted RBP	12.77	□□□□□ -0.37
LRRC49-215	ENST00000559201	PDC	P20941	246 aa		12.77	□□□□□ -0.37
LRRC49-215	ENST00000559201	HSPA1L	P34931	641 aa		12.77	□□□□□ -0.37

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