RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FOXD4L3Q6VB84 417 aaPredicted RBP9.76□□□□□ -0.85
VPS13C-208ENST00000559119 CCDC97Q96F63 343 aaPredicted RBP9.76□□□□□ -0.85
VPS13C-208ENST00000559119 SSBP4Q9BWG4 385 aaPredicted RBP9.76□□□□□ -0.85
VPS13C-208ENST00000559119 ZMYND15Q9H091 742 aa9.76□□□□□ -0.85
VPS13C-208ENST00000559119 FNDC3AQ9Y2H6 1198 aaKnown RBP9.76□□□□□ -0.85
VPS13C-208ENST00000559119 NOS3P29474 1203 aa9.75□□□□□ -0.85
VPS13C-208ENST00000559119 ZAP70P43403 619 aa9.75□□□□□ -0.85
VPS13C-208ENST00000559119 FAM26DQ5JW98 314 aa9.75□□□□□ -0.85
VPS13C-208ENST00000559119 CLP1Q92989 425 aaKnown RBP9.75□□□□□ -0.85
VPS13C-208ENST00000559119 DLL1O00548 723 aa9.74□□□□□ -0.85
VPS13C-208ENST00000559119 DCAF11Q8TEB1 546 aa9.74□□□□□ -0.85
VPS13C-208ENST00000559119 PBXIP1Q96AQ6 731 aa9.74□□□□□ -0.85
VPS13C-208ENST00000559119 SRA1Q9HD15 236 aaKnown RBP9.74□□□□□ -0.85
VPS13C-208ENST00000559119 TTC39BQ5VTQ0 682 aaPredicted RBP9.73□□□□□ -0.85
VPS13C-208ENST00000559119 CACTIN-AS1Q8N1I8 211 aa9.73□□□□□ -0.85
VPS13C-208ENST00000559119 OR13H1Q8NG92 308 aa9.73□□□□□ -0.85
VPS13C-208ENST00000559119 GPR152Q8TDT2 470 aa9.73□□□□□ -0.85
VPS13C-208ENST00000559119 SPACA7Q96KW9 195 aa9.73□□□□□ -0.85
VPS13C-208ENST00000559119 STIM2Q9P246 746 aa9.73□□□□□ -0.85
VPS13C-208ENST00000559119 HYAL2Q12891 473 aa9.72□□□□□ -0.85
VPS13C-208ENST00000559119 ARTNQ5T4W7 220 aa9.72□□□□□ -0.85
VPS13C-208ENST00000559119 MAP4K3Q8IVH8 894 aa9.72□□□□□ -0.85
VPS13C-208ENST00000559119 ABTB2Q8N961 1025 aa9.72□□□□□ -0.85
VPS13C-208ENST00000559119 AKTIPQ9H8T0 292 aa9.72□□□□□ -0.85
VPS13C-208ENST00000559119 ZFP64Q9NPA5 681 aa9.72□□□□□ -0.85
VPS13C-208ENST00000559119 SERPINA10Q9UK55 444 aa9.72□□□□□ -0.85
VPS13C-208ENST00000559119 TRIM33Q9UPN9 1127 aa9.72□□□□□ -0.85
VPS13C-208ENST00000559119 SCNN1AP37088 669 aa9.71□□□□□ -0.86
VPS13C-208ENST00000559119 MEGF10Q96KG7 1140 aa9.71□□□□□ -0.86
VPS13C-208ENST00000559119 MRPL18Q9H0U6 180 aaKnown RBP9.71□□□□□ -0.86
VPS13C-208ENST00000559119 MUC3BQ9H195 1237 aa9.71□□□□□ -0.86
VPS13C-208ENST00000559119 PPME1Q9Y570 386 aa9.7□□□□□ -0.86
VPS13C-208ENST00000559119 ATP2B4P23634 1241 aa9.69□□□□□ -0.86
VPS13C-208ENST00000559119 ZBTB39O15060 712 aa9.68□□□□□ -0.86
VPS13C-208ENST00000559119 SMNDC1O75940 238 aaKnown RBP eCLIP9.68□□□□□ -0.86
VPS13C-208ENST00000559119 SETDB1Q15047 1291 aa9.68□□□□□ -0.86
VPS13C-208ENST00000559119 CEP135Q66GS9 1140 aa9.68□□□□□ -0.86
VPS13C-208ENST00000559119 TMEM130Q8N3G9 435 aa9.68□□□□□ -0.86
VPS13C-208ENST00000559119 ABI2Q9NYB9 513 aaPredicted RBP9.68□□□□□ -0.86
VPS13C-208ENST00000559119 F8W735 103 aaPredicted RBP9.67□□□□□ -0.86
VPS13C-208ENST00000559119 ALX3O95076 343 aa9.67□□□□□ -0.86
VPS13C-208ENST00000559119 ATP11AP98196 1134 aa9.67□□□□□ -0.86
VPS13C-208ENST00000559119 COL13A1Q5TAT6 717 aaPredicted RBP9.67□□□□□ -0.86
VPS13C-208ENST00000559119 NBPF11Q86T75 865 aa9.67□□□□□ -0.86
VPS13C-208ENST00000559119 LRP8Q14114 963 aa9.66□□□□□ -0.86
VPS13C-208ENST00000559119 PRR23CQ6ZRP0 262 aa9.66□□□□□ -0.86
VPS13C-208ENST00000559119 LACRTQ9GZZ8 138 aa9.66□□□□□ -0.86
VPS13C-208ENST00000559119 SEPT3Q9UH03 358 aa9.66□□□□□ -0.86
VPS13C-208ENST00000559119 LINC01387J3KSC0 135 aa9.65□□□□□ -0.86
VPS13C-208ENST00000559119 NCAPG2Q86XI2 1143 aa9.65□□□□□ -0.86
VPS13C-208ENST00000559119 DZIP1LQ8IYY4 767 aaKnown RBP9.65□□□□□ -0.86
VPS13C-208ENST00000559119 SLAIN2Q9P270 581 aa9.65□□□□□ -0.86
VPS13C-208ENST00000559119 CDC27P30260 824 aa9.64□□□□□ -0.87
VPS13C-208ENST00000559119 PDE12Q6L8Q7 609 aaKnown RBP9.64□□□□□ -0.87
VPS13C-208ENST00000559119 NUDT16Q96DE0 195 aaKnown RBP9.64□□□□□ -0.87
VPS13C-208ENST00000559119 RASSF4Q9H2L5 321 aa9.64□□□□□ -0.87
VPS13C-208ENST00000559119 FAM177BA6PVY3 158 aa9.63□□□□□ -0.87
VPS13C-208ENST00000559119 KIF4AO95239 1232 aa9.63□□□□□ -0.87
VPS13C-208ENST00000559119 RPLP1P05386 114 aaKnown RBP9.63□□□□□ -0.87
VPS13C-208ENST00000559119 GLB1P16278 677 aa9.63□□□□□ -0.87
VPS13C-208ENST00000559119 ZNF438Q7Z4V0 828 aa9.63□□□□□ -0.87
VPS13C-208ENST00000559119 ELP3Q9H9T3 547 aa9.63□□□□□ -0.87
VPS13C-208ENST00000559119 CYP2E1P05181 493 aaPredicted RBP9.62□□□□□ -0.87
VPS13C-208ENST00000559119 PCSK2P16519 638 aa9.62□□□□□ -0.87
VPS13C-208ENST00000559119 CDC25BP30305 580 aa9.62□□□□□ -0.87
VPS13C-208ENST00000559119 FAM117BQ6P1L5 589 aa9.62□□□□□ -0.87
VPS13C-208ENST00000559119 TXNDC11Q6PKC3 985 aa9.62□□□□□ -0.87
VPS13C-208ENST00000559119 ATCAYQ86WG3 371 aa9.62□□□□□ -0.87
VPS13C-208ENST00000559119 AGGF1Q8N302 714 aaeCLIP9.62□□□□□ -0.87
VPS13C-208ENST00000559119 PBX4Q9BYU1 374 aa9.62□□□□□ -0.87
VPS13C-208ENST00000559119 ARID3CA6NKF2 412 aa9.61□□□□□ -0.87
VPS13C-208ENST00000559119 HYAL3O43820 417 aaPredicted RBP9.61□□□□□ -0.87
VPS13C-208ENST00000559119 CD68P34810 354 aaPredicted RBP9.61□□□□□ -0.87
VPS13C-208ENST00000559119 GALNT11Q8NCW6 608 aa9.61□□□□□ -0.87
VPS13C-208ENST00000559119 TTC16Q8NEE8 873 aa9.61□□□□□ -0.87
VPS13C-208ENST00000559119 TMEM63CQ9P1W3 806 aa9.61□□□□□ -0.87
VPS13C-208ENST00000559119 PTPRAP18433 802 aa9.6□□□□□ -0.87
VPS13C-208ENST00000559119 DNM1Q05193 864 aaKnown RBP9.6□□□□□ -0.87
VPS13C-208ENST00000559119 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.6□□□□□ -0.87
VPS13C-208ENST00000559119 HELQQ8TDG4 1101 aa9.6□□□□□ -0.87
VPS13C-208ENST00000559119 EDEM1Q92611 657 aa9.6□□□□□ -0.87
VPS13C-208ENST00000559119 RNF112Q9ULX5 631 aa9.6□□□□□ -0.87
VPS13C-208ENST00000559119 Q6ZS46 218 aa9.59□□□□□ -0.87
VPS13C-208ENST00000559119 SLC51AQ86UW1 340 aa9.59□□□□□ -0.87
VPS13C-208ENST00000559119 CEP120Q8N960 986 aa9.59□□□□□ -0.87
VPS13C-208ENST00000559119 CARD10Q9BWT7 1032 aa9.59□□□□□ -0.87
VPS13C-208ENST00000559119 KANSL3Q9P2N6 904 aa9.59□□□□□ -0.87
VPS13C-208ENST00000559119 FSTP19883 344 aa9.58□□□□□ -0.88
VPS13C-208ENST00000559119 NOM1Q5C9Z4 860 aaKnown RBP9.58□□□□□ -0.88
VPS13C-208ENST00000559119 ACAD11Q709F0 780 aa9.58□□□□□ -0.88
VPS13C-208ENST00000559119 KLHL23Q8NBE8 558 aa9.58□□□□□ -0.88
VPS13C-208ENST00000559119 PSMG3-AS1Q96PY0 264 aa9.58□□□□□ -0.88
VPS13C-208ENST00000559119 SH2B1Q9NRF2 756 aaPredicted RBP9.58□□□□□ -0.88
VPS13C-208ENST00000559119 FSCN2O14926 492 aa9.57□□□□□ -0.88
VPS13C-208ENST00000559119 C8orf34Q49A92 452 aa9.57□□□□□ -0.88
VPS13C-208ENST00000559119 CEP41Q9BYV8 373 aa9.57□□□□□ -0.88
VPS13C-208ENST00000559119 CNTN3Q9P232 1028 aa9.57□□□□□ -0.88
VPS13C-208ENST00000559119 WISP1O95388 367 aa9.56□□□□□ -0.88
VPS13C-208ENST00000559119 EPHA1P21709 976 aa9.56□□□□□ -0.88
VPS13C-208ENST00000559119 CES1P23141 567 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms