RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 SPDYE3A6NKU9 549 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 NID1P14543 1247 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 ARHGAP4P98171 946 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 KCNA1Q09470 495 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 PERM1Q5SV97 790 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 ELMSAN1Q6PJG2 1045 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 NUDT8Q8WV74 236 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 PLVAPQ9BX97 442 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 SUV39H2Q9H5I1 410 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 CCDC87Q9NVE4 849 aa7□□□□□ -1.29
VPS13C-207ENST00000558919 SOWAHDA6NJG2 315 aa6.99□□□□□ -1.29
VPS13C-207ENST00000558919 GHRHP01286 108 aa6.99□□□□□ -1.29
VPS13C-207ENST00000558919 COL8A1P27658 744 aa6.99□□□□□ -1.29
VPS13C-207ENST00000558919 HYAL2Q12891 473 aa6.99□□□□□ -1.29
VPS13C-207ENST00000558919 HFE2Q6ZVN8 426 aa6.99□□□□□ -1.29
VPS13C-207ENST00000558919 GJD3Q8N144 294 aa6.99□□□□□ -1.29
VPS13C-207ENST00000558919 NSUN5Q96P11 429 aaKnown RBP6.99□□□□□ -1.29
VPS13C-207ENST00000558919 RBSNQ9H1K0 784 aa6.99□□□□□ -1.29
VPS13C-207ENST00000558919 A6NHS1 94 aa6.98□□□□□ -1.29
VPS13C-207ENST00000558919 PATL2C9JE40 543 aaKnown RBP6.98□□□□□ -1.29
VPS13C-207ENST00000558919 J3QW42 95 aa6.98□□□□□ -1.29
VPS13C-207ENST00000558919 KIF4AO95239 1232 aa6.98□□□□□ -1.29
VPS13C-207ENST00000558919 EIF2AK2P19525 551 aaKnown RBP6.98□□□□□ -1.29
VPS13C-207ENST00000558919 AFF1P51825 1210 aaKnown RBP6.98□□□□□ -1.29
VPS13C-207ENST00000558919 PMEPA1Q969W9 287 aa6.98□□□□□ -1.29
VPS13C-207ENST00000558919 DCAF5Q96JK2 942 aa6.98□□□□□ -1.29
VPS13C-207ENST00000558919 BRPF3Q9ULD4 1205 aa6.98□□□□□ -1.29
VPS13C-207ENST00000558919 NDUFB5O43674 189 aa6.97□□□□□ -1.29
VPS13C-207ENST00000558919 GRIK5Q16478 980 aa6.97□□□□□ -1.29
VPS13C-207ENST00000558919 SPACA7Q96KW9 195 aa6.97□□□□□ -1.29
VPS13C-207ENST00000558919 CITED4Q96RK1 184 aa6.97□□□□□ -1.29
VPS13C-207ENST00000558919 SMG9Q9H0W8 520 aaKnown RBP6.97□□□□□ -1.29
VPS13C-207ENST00000558919 CNTN3Q9P232 1028 aa6.97□□□□□ -1.29
VPS13C-207ENST00000558919 CYP2E1P05181 493 aaPredicted RBP6.96□□□□□ -1.3
VPS13C-207ENST00000558919 COL13A1Q5TAT6 717 aaPredicted RBP6.96□□□□□ -1.3
VPS13C-207ENST00000558919 ILDR2Q71H61 639 aa6.96□□□□□ -1.3
VPS13C-207ENST00000558919 C1orf127Q8N9H9 656 aa6.96□□□□□ -1.3
VPS13C-207ENST00000558919 SNX29Q8TEQ0 813 aa6.96□□□□□ -1.3
VPS13C-207ENST00000558919 PLD4Q96BZ4 506 aa6.96□□□□□ -1.3
VPS13C-207ENST00000558919 SALL4Q9UJQ4 1053 aa6.96□□□□□ -1.3
VPS13C-207ENST00000558919 TNFRSF21O75509 655 aa6.95□□□□□ -1.3
VPS13C-207ENST00000558919 SPATA31C1P0DKV0 1188 aa6.95□□□□□ -1.3
VPS13C-207ENST00000558919 PDIA4P13667 645 aaKnown RBP6.95□□□□□ -1.3
VPS13C-207ENST00000558919 CES1P23141 567 aa6.95□□□□□ -1.3
VPS13C-207ENST00000558919 PDE3BQ13370 1112 aa6.95□□□□□ -1.3
VPS13C-207ENST00000558919 PRRT3Q5FWE3 981 aa6.95□□□□□ -1.3
VPS13C-207ENST00000558919 MSL1Q68DK7 614 aa6.95□□□□□ -1.3
VPS13C-207ENST00000558919 CACTIN-AS1Q8N1I8 211 aa6.95□□□□□ -1.3
VPS13C-207ENST00000558919 CHRDQ9H2X0 955 aa6.95□□□□□ -1.3
VPS13C-207ENST00000558919 PHACTR2O75167 634 aa6.94□□□□□ -1.3
VPS13C-207ENST00000558919 TRIM28Q13263 835 aaKnown RBP6.94□□□□□ -1.3
VPS13C-207ENST00000558919 TRAPPC3LQ5T215 181 aa6.94□□□□□ -1.3
VPS13C-207ENST00000558919 NCAPG2Q86XI2 1143 aa6.94□□□□□ -1.3
VPS13C-207ENST00000558919 CEP120Q8N960 986 aa6.94□□□□□ -1.3
VPS13C-207ENST00000558919 FAM129BQ96TA1 746 aa6.94□□□□□ -1.3
VPS13C-207ENST00000558919 IVNS1ABPQ9Y6Y0 642 aa6.94□□□□□ -1.3
VPS13C-207ENST00000558919 KRBA1A5PL33 1030 aa6.93□□□□□ -1.3
VPS13C-207ENST00000558919 NEFLP07196 543 aa6.93□□□□□ -1.3
VPS13C-207ENST00000558919 DTWD1Q8N5C7 304 aa6.93□□□□□ -1.3
VPS13C-207ENST00000558919 KANSL3Q9P2N6 904 aa6.93□□□□□ -1.3
VPS13C-207ENST00000558919 FOXD3Q9UJU5 478 aaPredicted RBP6.93□□□□□ -1.3
VPS13C-207ENST00000558919 A0A0A0MRY4 1105 aa6.92□□□□□ -1.3
VPS13C-207ENST00000558919 SMNDC1O75940 238 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS13C-207ENST00000558919 RAC1P63000 192 aa6.92□□□□□ -1.3
VPS13C-207ENST00000558919 ATP11AP98196 1134 aa6.92□□□□□ -1.3
VPS13C-207ENST00000558919 WFDC8Q8IUA0 241 aa6.92□□□□□ -1.3
VPS13C-207ENST00000558919 DMRTC2Q8IXT2 367 aaPredicted RBP6.92□□□□□ -1.3
VPS13C-207ENST00000558919 KCTD17Q8N5Z5 321 aa6.92□□□□□ -1.3
VPS13C-207ENST00000558919 RBCK1Q9BYM8 510 aa6.92□□□□□ -1.3
VPS13C-207ENST00000558919 PBX4Q9BYU1 374 aa6.92□□□□□ -1.3
VPS13C-207ENST00000558919 RASSF4Q9H2L5 321 aa6.92□□□□□ -1.3
VPS13C-207ENST00000558919 ZFYVE28Q9HCC9 887 aa6.92□□□□□ -1.3
VPS13C-207ENST00000558919 BIN2Q9UBW5 565 aaPredicted RBP6.92□□□□□ -1.3
VPS13C-207ENST00000558919 EREGO14944 169 aa6.91□□□□□ -1.3
VPS13C-207ENST00000558919 BAG6P46379 1132 aa6.91□□□□□ -1.3
VPS13C-207ENST00000558919 PLA2G4EQ3MJ16 856 aa6.91□□□□□ -1.3
VPS13C-207ENST00000558919 CEP135Q66GS9 1140 aa6.91□□□□□ -1.3
VPS13C-207ENST00000558919 GDF6Q6KF10 455 aaPredicted RBP6.91□□□□□ -1.3
VPS13C-207ENST00000558919 DMRTB1Q96MA1 342 aa6.91□□□□□ -1.3
VPS13C-207ENST00000558919 KRTAP4-8Q9BYQ9 185 aa6.91□□□□□ -1.3
VPS13C-207ENST00000558919 DCTN4Q9UJW0 460 aa6.91□□□□□ -1.3
VPS13C-207ENST00000558919 AMOTL2Q9Y2J4 779 aa6.91□□□□□ -1.3
VPS13C-207ENST00000558919 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.91□□□□□ -1.3
VPS13C-207ENST00000558919 FAM229AH3BQW9 127 aa6.9□□□□□ -1.3
VPS13C-207ENST00000558919 IGHA1P01876 353 aa6.9□□□□□ -1.3
VPS13C-207ENST00000558919 EDN3P14138 238 aa6.9□□□□□ -1.3
VPS13C-207ENST00000558919 XP32Q5T750 250 aa6.9□□□□□ -1.3
VPS13C-207ENST00000558919 FMR1NBQ8N0W7 255 aaPredicted RBP6.9□□□□□ -1.3
VPS13C-207ENST00000558919 NACC1Q96RE7 527 aa6.9□□□□□ -1.3
VPS13C-207ENST00000558919 MUC3BQ9H195 1237 aa6.9□□□□□ -1.3
VPS13C-207ENST00000558919 TRIM33Q9UPN9 1127 aa6.9□□□□□ -1.3
VPS13C-207ENST00000558919 NFKBIEO00221 500 aa6.89□□□□□ -1.31
VPS13C-207ENST00000558919 APBA3O96018 575 aa6.89□□□□□ -1.31
VPS13C-207ENST00000558919 IGHA2P01877 340 aa6.89□□□□□ -1.31
VPS13C-207ENST00000558919 ITGB2P05107 769 aa6.89□□□□□ -1.31
VPS13C-207ENST00000558919 ELNP15502 786 aa6.89□□□□□ -1.31
VPS13C-207ENST00000558919 IL22RA1Q8N6P7 574 aa6.89□□□□□ -1.31
VPS13C-207ENST00000558919 TMC1Q8TDI8 760 aa6.89□□□□□ -1.31
VPS13C-207ENST00000558919 ALKBH8Q96BT7 664 aaKnown RBP6.89□□□□□ -1.31
VPS13C-207ENST00000558919 SRA1Q9HD15 236 aaKnown RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms