RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 NFKB1P19838 968 aa10.21□□□□□ -0.77
RTF1-204ENST00000558117 GRNP28799 593 aaKnown RBP10.21□□□□□ -0.77
RTF1-204ENST00000558117 SCARF2Q96GP6 870 aaPredicted RBP10.21□□□□□ -0.77
RTF1-204ENST00000558117 GSX2Q9BZM3 304 aa10.21□□□□□ -0.77
RTF1-204ENST00000558117 C11orf16Q9NQ32 467 aa10.21□□□□□ -0.77
RTF1-204ENST00000558117 USP20Q9Y2K6 914 aa10.21□□□□□ -0.77
RTF1-204ENST00000558117 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.21□□□□□ -0.77
RTF1-204ENST00000558117 ELOA3CA0A087WX78 387 aaPredicted RBP10.2□□□□□ -0.78
RTF1-204ENST00000558117 ELOA3DA6NLF2 546 aaPredicted RBP10.2□□□□□ -0.78
RTF1-204ENST00000558117 PDIA4P13667 645 aaKnown RBP10.2□□□□□ -0.78
RTF1-204ENST00000558117 ZAP70P43403 619 aa10.2□□□□□ -0.78
RTF1-204ENST00000558117 ZNF211Q13398 564 aaPredicted RBP10.2□□□□□ -0.78
RTF1-204ENST00000558117 ELOA3BQ3SY89 546 aa10.2□□□□□ -0.78
RTF1-204ENST00000558117 KRT25Q7Z3Z0 450 aa10.2□□□□□ -0.78
RTF1-204ENST00000558117 ELOA3Q8NG57 546 aa10.2□□□□□ -0.78
RTF1-204ENST00000558117 UBE2OQ9C0C9 1292 aaKnown RBP10.2□□□□□ -0.78
RTF1-204ENST00000558117 TNIKQ9UKE5 1360 aa10.2□□□□□ -0.78
RTF1-204ENST00000558117 UACAQ9BZF9 1416 aa10.19□□□□□ -0.78
RTF1-204ENST00000558117 CHSY3Q70JA7 882 aa10.19□□□□□ -0.78
RTF1-204ENST00000558117 PIK3R5Q8WYR1 880 aa10.19□□□□□ -0.78
RTF1-204ENST00000558117 TNFRSF25Q93038 417 aa10.19□□□□□ -0.78
RTF1-204ENST00000558117 IGFLR1Q9H665 355 aa10.19□□□□□ -0.78
RTF1-204ENST00000558117 BTBD6Q96KE9 485 aa10.18□□□□□ -0.78
RTF1-204ENST00000558117 ADARB2-AS1A8MUL3 147 aa10.17□□□□□ -0.78
RTF1-204ENST00000558117 PHF20L1A8MW92 1017 aa10.17□□□□□ -0.78
RTF1-204ENST00000558117 XYLBO75191 536 aa10.17□□□□□ -0.78
RTF1-204ENST00000558117 RARAP10276 462 aa10.17□□□□□ -0.78
RTF1-204ENST00000558117 MPSTP25325 297 aa10.17□□□□□ -0.78
RTF1-204ENST00000558117 ADH7P40394 386 aa10.17□□□□□ -0.78
RTF1-204ENST00000558117 ATCAYQ86WG3 371 aa10.17□□□□□ -0.78
RTF1-204ENST00000558117 RGS17Q9UGC6 210 aaPredicted RBP10.17□□□□□ -0.78
RTF1-204ENST00000558117 WDR7Q9Y4E6 1490 aa10.17□□□□□ -0.78
RTF1-204ENST00000558117 RAPGEF3O95398 923 aa10.16□□□□□ -0.78
RTF1-204ENST00000558117 FKBP4Q02790 459 aaKnown RBP eCLIP10.16□□□□□ -0.78
RTF1-204ENST00000558117 SF3B2Q13435 895 aaKnown RBP10.16□□□□□ -0.78
RTF1-204ENST00000558117 NOM1Q5C9Z4 860 aaKnown RBP10.16□□□□□ -0.78
RTF1-204ENST00000558117 BEND7Q8N7W2 519 aaPredicted RBP10.16□□□□□ -0.78
RTF1-204ENST00000558117 GPR152Q8TDT2 470 aa10.16□□□□□ -0.78
RTF1-204ENST00000558117 MKL2Q9ULH7 1088 aa10.16□□□□□ -0.78
RTF1-204ENST00000558117 FNDC3AQ9Y2H6 1198 aaKnown RBP10.16□□□□□ -0.78
RTF1-204ENST00000558117 WRNQ14191 1432 aaPredicted RBP eCLIP10.16□□□□□ -0.78
RTF1-204ENST00000558117 PIK3R2O00459 728 aa10.15□□□□□ -0.78
RTF1-204ENST00000558117 SASH3O75995 380 aa10.15□□□□□ -0.78
RTF1-204ENST00000558117 EGFRP00533 1210 aa10.15□□□□□ -0.78
RTF1-204ENST00000558117 AAMPQ13685 434 aa10.15□□□□□ -0.78
RTF1-204ENST00000558117 ALKBH2Q6NS38 261 aa10.15□□□□□ -0.78
RTF1-204ENST00000558117 KANK3Q6NY19 840 aa10.15□□□□□ -0.78
RTF1-204ENST00000558117 CCER1Q8TC90 406 aaPredicted RBP10.15□□□□□ -0.78
RTF1-204ENST00000558117 ICMTO60725 284 aa10.14□□□□□ -0.79
RTF1-204ENST00000558117 PCSK2P16519 638 aa10.14□□□□□ -0.79
RTF1-204ENST00000558117 NPR3P17342 541 aa10.14□□□□□ -0.79
RTF1-204ENST00000558117 TARSP26639 723 aaKnown RBP10.14□□□□□ -0.79
RTF1-204ENST00000558117 ECM1Q16610 540 aa10.14□□□□□ -0.79
RTF1-204ENST00000558117 TTC16Q8NEE8 873 aa10.14□□□□□ -0.79
RTF1-204ENST00000558117 EGFL7Q9UHF1 273 aa10.14□□□□□ -0.79
RTF1-204ENST00000558117 GNEQ9Y223 722 aaKnown RBP10.14□□□□□ -0.79
RTF1-204ENST00000558117 KCNMB2Q9Y691 235 aa10.14□□□□□ -0.79
RTF1-204ENST00000558117 CNTNAP5Q8WYK1 1306 aa10.13□□□□□ -0.79
RTF1-204ENST00000558117 CFAP43Q8NDM7 1665 aa10.13□□□□□ -0.79
RTF1-204ENST00000558117 FAM13AO94988 1023 aa10.13□□□□□ -0.79
RTF1-204ENST00000558117 EIF1AXP47813 144 aaKnown RBP10.13□□□□□ -0.79
RTF1-204ENST00000558117 PCSK7Q16549 785 aa10.13□□□□□ -0.79
RTF1-204ENST00000558117 DHX32Q7L7V1 743 aaKnown RBP10.13□□□□□ -0.79
RTF1-204ENST00000558117 AEBP1Q8IUX7 1158 aa10.13□□□□□ -0.79
RTF1-204ENST00000558117 DNAJB12Q9NXW2 375 aaKnown RBP10.13□□□□□ -0.79
RTF1-204ENST00000558117 ZCCHC11Q5TAX3 1644 aaKnown RBP10.12□□□□□ -0.79
RTF1-204ENST00000558117 H3BRB1 525 aa10.12□□□□□ -0.79
RTF1-204ENST00000558117 MAP3K6O95382 1288 aa10.12□□□□□ -0.79
RTF1-204ENST00000558117 RPLP1P05386 114 aaKnown RBP10.12□□□□□ -0.79
RTF1-204ENST00000558117 TUT1Q9H6E5 874 aaKnown RBP10.12□□□□□ -0.79
RTF1-204ENST00000558117 SLC6A14Q9UN76 642 aa10.12□□□□□ -0.79
RTF1-204ENST00000558117 IVNS1ABPQ9Y6Y0 642 aa10.12□□□□□ -0.79
RTF1-204ENST00000558117 IRS1P35568 1242 aa10.11□□□□□ -0.79
RTF1-204ENST00000558117 SNRPNP63162 240 aaKnown RBP10.11□□□□□ -0.79
RTF1-204ENST00000558117 DNM1Q05193 864 aaKnown RBP10.11□□□□□ -0.79
RTF1-204ENST00000558117 KCNA1Q09470 495 aa10.11□□□□□ -0.79
RTF1-204ENST00000558117 TRIP4Q15650 581 aaPredicted RBP10.11□□□□□ -0.79
RTF1-204ENST00000558117 NLRP13Q86W25 1043 aa10.11□□□□□ -0.79
RTF1-204ENST00000558117 HOMEZQ8IX15 550 aa10.11□□□□□ -0.79
RTF1-204ENST00000558117 EDEM1Q92611 657 aa10.11□□□□□ -0.79
RTF1-204ENST00000558117 NUDT16Q96DE0 195 aaKnown RBP10.11□□□□□ -0.79
RTF1-204ENST00000558117 MDFIQ99750 246 aa10.11□□□□□ -0.79
RTF1-204ENST00000558117 ZFATQ9P243 1243 aa10.11□□□□□ -0.79
RTF1-204ENST00000558117 PREX1Q8TCU6 1659 aa10.1□□□□□ -0.79
RTF1-204ENST00000558117 PSAPP07602 524 aa10.1□□□□□ -0.79
RTF1-204ENST00000558117 DGKGP49619 791 aa10.1□□□□□ -0.79
RTF1-204ENST00000558117 KCNMA1Q12791 1236 aa10.1□□□□□ -0.79
RTF1-204ENST00000558117 GLYCTKQ8IVS8 523 aa10.1□□□□□ -0.79
RTF1-204ENST00000558117 CARMIL2Q6F5E8 1435 aa10.09□□□□□ -0.79
RTF1-204ENST00000558117 GNB5O14775 395 aa10.09□□□□□ -0.79
RTF1-204ENST00000558117 PHLDB1Q86UU1 1377 aa10.09□□□□□ -0.79
RTF1-204ENST00000558117 SOWAHDA6NJG2 315 aa10.08□□□□□ -0.8
RTF1-204ENST00000558117 M0R082 166 aa10.08□□□□□ -0.8
RTF1-204ENST00000558117 MZF1P28698 734 aaPredicted RBP10.08□□□□□ -0.8
RTF1-204ENST00000558117 PLAURQ03405 335 aa10.08□□□□□ -0.8
RTF1-204ENST00000558117 FAM35AQ86V20 835 aa10.08□□□□□ -0.8
RTF1-204ENST00000558117 ZNF417Q8TAU3 575 aa10.08□□□□□ -0.8
RTF1-204ENST00000558117 ZNF587Q96SQ5 575 aaPredicted RBP10.08□□□□□ -0.8
RTF1-204ENST00000558117 CCDC87Q9NVE4 849 aa10.08□□□□□ -0.8
RTF1-204ENST00000558117 TLR7Q9NYK1 1049 aaKnown RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms