RNA–Protein interactions for RNA: ENST00000557916.5

SMAD6-202, Transcript of SMAD family member 6, humanhuman

TSL 1 (best)

Gene SMAD6, Length 1,401 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6-202ENST00000557916 CHD4Q14839 1912 aa31.91■■■□□ 2.7
SMAD6-202ENST00000557916 SPEF2Q9C093 1822 aa31.91■■■□□ 2.7
SMAD6-202ENST00000557916 SUPT20HQ8NEM7 779 aa31.91■■■□□ 2.7
SMAD6-202ENST00000557916 CHMP4BQ9H444 224 aaKnown RBP31.91■■■□□ 2.7
SMAD6-202ENST00000557916 C1orf115Q9H7X2 142 aa31.91■■■□□ 2.7
SMAD6-202ENST00000557916 RFX5P48382 616 aaPredicted RBP31.9■■■□□ 2.7
SMAD6-202ENST00000557916 MTX1Q13505 466 aa31.9■■■□□ 2.7
SMAD6-202ENST00000557916 CNNM1Q9NRU3 951 aa31.9■■■□□ 2.7
SMAD6-202ENST00000557916 PODXL2Q9NZ53 605 aa31.9■■■□□ 2.7
SMAD6-202ENST00000557916 KLHDC4Q8TBB5 520 aa31.89■■■□□ 2.7
SMAD6-202ENST00000557916 XDHP47989 1333 aa31.88■■■□□ 2.69
SMAD6-202ENST00000557916 SRGAP3O43295 1099 aa31.88■■■□□ 2.69
SMAD6-202ENST00000557916 SBF1O95248 1867 aa31.88■■■□□ 2.69
SMAD6-202ENST00000557916 C6orf229H3BNL8 230 aa31.87■■■□□ 2.69
SMAD6-202ENST00000557916 IARSP41252 1262 aaKnown RBP31.87■■■□□ 2.69
SMAD6-202ENST00000557916 CHRNDQ07001 517 aa31.87■■■□□ 2.69
SMAD6-202ENST00000557916 PUS3Q9BZE2 481 aaKnown RBP31.87■■■□□ 2.69
SMAD6-202ENST00000557916 ANKRD2Q9GZV1 360 aa31.87■■■□□ 2.69
SMAD6-202ENST00000557916 POLLQ9UGP5 575 aa31.87■■■□□ 2.69
SMAD6-202ENST00000557916 GGA1Q9UJY5 639 aa31.87■■■□□ 2.69
SMAD6-202ENST00000557916 SUPT16HQ9Y5B9 1047 aaKnown RBP31.87■■■□□ 2.69
SMAD6-202ENST00000557916 PTPN12Q05209 780 aaKnown RBP31.86■■■□□ 2.69
SMAD6-202ENST00000557916 TBC1D16Q8TBP0 767 aa31.86■■■□□ 2.69
SMAD6-202ENST00000557916 ZBTB40Q9NUA8 1239 aa31.86■■■□□ 2.69
SMAD6-202ENST00000557916 DUOX1Q9NRD9 1551 aa31.85■■■□□ 2.69
SMAD6-202ENST00000557916 UFL1O94874 794 aa31.84■■■□□ 2.69
SMAD6-202ENST00000557916 VPS33BQ9H267 617 aa31.84■■■□□ 2.69
SMAD6-202ENST00000557916 ATP2B4P23634 1241 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 LRRC24Q50LG9 513 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 RIPOR2Q9Y4F9 1068 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 CCDC88AQ3V6T2 1871 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 PNMA6EA0A0J9YXQ4 647 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 PPIP5K2O43314 1243 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 ATP8B2P98198 1209 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 AOC3Q16853 763 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 LARGE2Q8N3Y3 721 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 HELBQ8NG08 1087 aaPredicted RBP31.83■■■□□ 2.69
SMAD6-202ENST00000557916 EYA3Q99504 573 aa31.83■■■□□ 2.69
SMAD6-202ENST00000557916 LTBP1Q14766 1721 aa31.82■■■□□ 2.68
SMAD6-202ENST00000557916 YY1P25490 414 aa31.82■■■□□ 2.68
SMAD6-202ENST00000557916 WASHC4Q2M389 1173 aa31.82■■■□□ 2.68
SMAD6-202ENST00000557916 EYA2O00167 538 aa31.81■■■□□ 2.68
SMAD6-202ENST00000557916 TAF5LO75529 589 aa31.81■■■□□ 2.68
SMAD6-202ENST00000557916 GPR101Q96P66 508 aaPredicted RBP31.81■■■□□ 2.68
SMAD6-202ENST00000557916 COPRSQ9NQ92 184 aa31.81■■■□□ 2.68
SMAD6-202ENST00000557916 PA2G4Q9UQ80 394 aaKnown RBP31.81■■■□□ 2.68
SMAD6-202ENST00000557916 LEMD3Q9Y2U8 911 aa31.81■■■□□ 2.68
SMAD6-202ENST00000557916 MROH5Q6ZUA9 1318 aa31.8■■■□□ 2.68
SMAD6-202ENST00000557916 WTIPA6NIX2 430 aaPredicted RBP31.8■■■□□ 2.68
SMAD6-202ENST00000557916 KIAA2012Q0VF49 1180 aa31.8■■■□□ 2.68
SMAD6-202ENST00000557916 JDP2Q8WYK2 163 aa31.8■■■□□ 2.68
SMAD6-202ENST00000557916 SIL1Q9H173 461 aa31.8■■■□□ 2.68
SMAD6-202ENST00000557916 RIMBP2O15034 1052 aa31.79■■■□□ 2.68
SMAD6-202ENST00000557916 CEP85Q6P2H3 762 aa31.79■■■□□ 2.68
SMAD6-202ENST00000557916 FBXO3Q9UK99 471 aa31.79■■■□□ 2.68
SMAD6-202ENST00000557916 KCNJ4P48050 445 aa31.78■■■□□ 2.68
SMAD6-202ENST00000557916 POLA2Q14181 598 aa31.78■■■□□ 2.68
SMAD6-202ENST00000557916 ZC3H12CQ9C0D7 883 aaKnown RBP31.78■■■□□ 2.68
SMAD6-202ENST00000557916 ZNF804BA4D1E1 1349 aa31.78■■■□□ 2.68
SMAD6-202ENST00000557916 METTL24Q5JXM2 366 aa31.77■■■□□ 2.68
SMAD6-202ENST00000557916 SSH3Q8TE77 659 aa31.77■■■□□ 2.68
SMAD6-202ENST00000557916 CRBNQ96SW2 442 aa31.77■■■□□ 2.68
SMAD6-202ENST00000557916 ZC3H4Q9UPT8 1303 aaKnown RBP31.77■■■□□ 2.68
SMAD6-202ENST00000557916 CIAO1O76071 339 aa31.76■■■□□ 2.68
SMAD6-202ENST00000557916 ATG9AQ7Z3C6 839 aa31.76■■■□□ 2.68
SMAD6-202ENST00000557916 NIM1KQ8IY84 436 aa31.76■■■□□ 2.68
SMAD6-202ENST00000557916 DICER1Q9UPY3 1922 aaKnown RBP31.76■■■□□ 2.67
SMAD6-202ENST00000557916 SNAP23O00161 211 aa31.75■■■□□ 2.67
SMAD6-202ENST00000557916 RPAP2Q8IXW5 612 aaPredicted RBP31.75■■■□□ 2.67
SMAD6-202ENST00000557916 COL4A5P29400 1685 aa31.74■■■□□ 2.67
SMAD6-202ENST00000557916 IL15P40933 162 aaPredicted RBP31.74■■■□□ 2.67
SMAD6-202ENST00000557916 TIAM2Q8IVF5 1701 aa31.73■■■□□ 2.67
SMAD6-202ENST00000557916 FZD9O00144 591 aa31.72■■■□□ 2.67
SMAD6-202ENST00000557916 PDE8BO95263 885 aa31.72■■■□□ 2.67
SMAD6-202ENST00000557916 VGLL2Q8N8G2 317 aa31.72■■■□□ 2.67
SMAD6-202ENST00000557916 MED23Q9ULK4 1368 aa31.72■■■□□ 2.67
SMAD6-202ENST00000557916 A0A1B0GUL6 1792 aa31.71■■■□□ 2.67
SMAD6-202ENST00000557916 DOK7Q18PE1 504 aa31.71■■■□□ 2.67
SMAD6-202ENST00000557916 ZNRF3Q9ULT6 936 aa31.71■■■□□ 2.67
SMAD6-202ENST00000557916 G3V3G9 751 aa31.7■■■□□ 2.67
SMAD6-202ENST00000557916 G3BP1Q13283 466 aaKnown RBP eCLIP31.7■■■□□ 2.67
SMAD6-202ENST00000557916 UBE4AQ14139 1066 aa31.7■■■□□ 2.67
SMAD6-202ENST00000557916 DCAF8Q5TAQ9 597 aa31.7■■■□□ 2.67
SMAD6-202ENST00000557916 DBNDD1Q9H9R9 158 aa31.7■■■□□ 2.67
SMAD6-202ENST00000557916 CEP126Q9P2H0 1117 aa31.7■■■□□ 2.67
SMAD6-202ENST00000557916 KLRK1P26718 216 aa31.69■■■□□ 2.66
SMAD6-202ENST00000557916 TXNRD3Q86VQ6 643 aa31.69■■■□□ 2.66
SMAD6-202ENST00000557916 EIF6P56537 245 aaKnown RBP31.68■■■□□ 2.66
SMAD6-202ENST00000557916 DPY19L2Q6NUT2 758 aa31.68■■■□□ 2.66
SMAD6-202ENST00000557916 ECE2O60344 883 aa31.67■■■□□ 2.66
SMAD6-202ENST00000557916 HMMRO75330 724 aa31.67■■■□□ 2.66
SMAD6-202ENST00000557916 SURF6O75683 361 aaKnown RBP31.67■■■□□ 2.66
SMAD6-202ENST00000557916 SIRT2Q8IXJ6 389 aa31.67■■■□□ 2.66
SMAD6-202ENST00000557916 C15orf52Q6ZUT6 534 aaKnown RBP31.66■■■□□ 2.66
SMAD6-202ENST00000557916 ZNF541Q9H0D2 1346 aa31.66■■■□□ 2.66
SMAD6-202ENST00000557916 IRS2Q9Y4H2 1338 aa31.66■■■□□ 2.66
SMAD6-202ENST00000557916 GLTPD2A6NH11 291 aa31.66■■■□□ 2.66
SMAD6-202ENST00000557916 PUM3Q15397 648 aaKnown RBP31.66■■■□□ 2.66
SMAD6-202ENST00000557916 NOP58Q9Y2X3 529 aaKnown RBP31.66■■■□□ 2.66
SMAD6-202ENST00000557916 YDJCA8MPS7 323 aa31.65■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms