RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 POLLQ9UGP5 575 aa10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 NSFL1CQ9UNZ2 370 aaKnown RBP10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 RBBP6Q7Z6E9 1792 aaKnown RBP10.74□□□□□ -0.69
CCDC88C-214ENST00000557507 A0A1B0GUL6 1792 aa10.73□□□□□ -0.69
CCDC88C-214ENST00000557507 RPS12P25398 132 aaKnown RBP10.73□□□□□ -0.69
CCDC88C-214ENST00000557507 DOK7Q18PE1 504 aa10.73□□□□□ -0.69
CCDC88C-214ENST00000557507 CCDC102AQ96A19 550 aa10.73□□□□□ -0.69
CCDC88C-214ENST00000557507 ZNF609O15014 1411 aa10.73□□□□□ -0.69
CCDC88C-214ENST00000557507 C6orf229H3BNL8 230 aa10.72□□□□□ -0.69
CCDC88C-214ENST00000557507 SF3B3Q15393 1217 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-214ENST00000557507 RASAL3Q86YV0 1011 aa10.72□□□□□ -0.69
CCDC88C-214ENST00000557507 DCPSQ96C86 337 aaKnown RBP10.72□□□□□ -0.69
CCDC88C-214ENST00000557507 CDCA5Q96FF9 252 aa10.72□□□□□ -0.69
CCDC88C-214ENST00000557507 FAM89AQ96GI7 184 aa10.72□□□□□ -0.69
CCDC88C-214ENST00000557507 CSRNP1Q96S65 589 aa10.72□□□□□ -0.69
CCDC88C-214ENST00000557507 CHPF2Q9P2E5 772 aa10.72□□□□□ -0.69
CCDC88C-214ENST00000557507 RIPK4P57078 832 aa10.71□□□□□ -0.69
CCDC88C-214ENST00000557507 CTU1Q7Z7A3 348 aaKnown RBP10.71□□□□□ -0.69
CCDC88C-214ENST00000557507 SULF1Q8IWU6 871 aa10.71□□□□□ -0.69
CCDC88C-214ENST00000557507 TBC1D16Q8TBP0 767 aa10.71□□□□□ -0.69
CCDC88C-214ENST00000557507 ISCA1Q9BUE6 129 aa10.71□□□□□ -0.69
CCDC88C-214ENST00000557507 BABAM1Q9NWV8 329 aa10.71□□□□□ -0.69
CCDC88C-214ENST00000557507 ATP5J2-PTCD1G3V325 749 aa10.7□□□□□ -0.7
CCDC88C-214ENST00000557507 VIL1P09327 827 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-214ENST00000557507 RTL5Q5HYW3 569 aaPredicted RBP10.7□□□□□ -0.7
CCDC88C-214ENST00000557507 PRPF38BQ5VTL8 546 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-214ENST00000557507 PLBD2Q8NHP8 589 aa10.7□□□□□ -0.7
CCDC88C-214ENST00000557507 CEP290O15078 2479 aa10.7□□□□□ -0.7
CCDC88C-214ENST00000557507 OTOFQ9HC10 1997 aa10.7□□□□□ -0.7
CCDC88C-214ENST00000557507 TMPOP42166 694 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-214ENST00000557507 ANGEL2Q5VTE6 544 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-214ENST00000557507 EYA3Q99504 573 aa10.69□□□□□ -0.7
CCDC88C-214ENST00000557507 PNNQ9H307 717 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-214ENST00000557507 SCAF8Q9UPN6 1271 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-214ENST00000557507 HPS5Q9UPZ3 1129 aa10.69□□□□□ -0.7
CCDC88C-214ENST00000557507 HTTP42858 3142 aa10.68□□□□□ -0.7
CCDC88C-214ENST00000557507 IRS4O14654 1257 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-214ENST00000557507 UFL1O94874 794 aa10.68□□□□□ -0.7
CCDC88C-214ENST00000557507 ZNF280AP59817 542 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-214ENST00000557507 HDGFL1Q5TGJ6 251 aa10.68□□□□□ -0.7
CCDC88C-214ENST00000557507 MOB2Q70IA6 237 aa10.68□□□□□ -0.7
CCDC88C-214ENST00000557507 SEC31BQ9NQW1 1179 aa10.68□□□□□ -0.7
CCDC88C-214ENST00000557507 CHL1O00533 1208 aa10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 RPS8P62241 208 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 LMOD3Q0VAK6 560 aa10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 SCARF1Q14162 830 aa10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 RSBN1LQ6PCB5 846 aaPredicted RBP10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 ANKRD13DQ6ZTN6 518 aa10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 GMLQ99445 158 aa10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 ZC3H12CQ9C0D7 883 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 PODXL2Q9NZ53 605 aa10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 MKI67P46013 3256 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-214ENST00000557507 CENPFP49454 3210 aa10.66□□□□□ -0.7
CCDC88C-214ENST00000557507 PITPNM2Q9BZ72 1349 aa10.66□□□□□ -0.7
CCDC88C-214ENST00000557507 TBC1D8O95759 1140 aa10.66□□□□□ -0.7
CCDC88C-214ENST00000557507 NEUROD2Q15784 382 aa10.66□□□□□ -0.7
CCDC88C-214ENST00000557507 AGBL3Q8NEM8 1001 aa10.66□□□□□ -0.7
CCDC88C-214ENST00000557507 ZNF296Q8WUU4 475 aaPredicted RBP10.66□□□□□ -0.7
CCDC88C-214ENST00000557507 MYOZ2Q9NPC6 264 aa10.66□□□□□ -0.7
CCDC88C-214ENST00000557507 GGA1Q9UJY5 639 aa10.66□□□□□ -0.7
CCDC88C-214ENST00000557507 LAS1LQ9Y4W2 734 aaKnown RBP10.66□□□□□ -0.7
CCDC88C-214ENST00000557507 BRCA2P51587 3418 aa10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 UBE2Q2LH0YL09 131 aa10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 HOXB7P09629 217 aa10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 FKBP1BP68106 108 aa10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 TRIM28Q13263 835 aaKnown RBP10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 PRAMEF18Q5VWM3 479 aa10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 CCDC146Q8IYE0 955 aa10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 REM2Q8IYK8 340 aaPredicted RBP10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 ANKIB1Q9P2G1 1089 aa10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 DBF4Q9UBU7 674 aaPredicted RBP10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 TRIM35Q9UPQ4 493 aa10.65□□□□□ -0.7
CCDC88C-214ENST00000557507 CACNA1FO60840 1977 aa10.65□□□□□ -0.71
CCDC88C-214ENST00000557507 G3V3G9 751 aa10.64□□□□□ -0.71
CCDC88C-214ENST00000557507 USP17L8P0C7I0 530 aa10.64□□□□□ -0.71
CCDC88C-214ENST00000557507 DCAF8Q5TAQ9 597 aa10.64□□□□□ -0.71
CCDC88C-214ENST00000557507 ZBTB38Q8NAP3 1195 aaPredicted RBP10.64□□□□□ -0.71
CCDC88C-214ENST00000557507 CCDC85AQ96PX6 553 aaPredicted RBP10.64□□□□□ -0.71
CCDC88C-214ENST00000557507 HDAC9Q9UKV0 1011 aa10.64□□□□□ -0.71
CCDC88C-214ENST00000557507 TRIOBPQ9H2D6 2365 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 XDHP47989 1333 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 WTIPA6NIX2 430 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 GPR25O00155 361 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 MKRN3Q13064 507 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 PKN2Q16513 984 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 NBPF9Q3BBW0 867 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 DUSP27Q5VZP5 1158 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 JARID2Q92833 1246 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 MXD3Q9BW11 206 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 HYPKQ9NX55 129 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 ARAP2Q8WZ64 1704 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 MED23Q9ULK4 1368 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 ZSWIM8A7E2V4 1837 aa10.63□□□□□ -0.71
CCDC88C-214ENST00000557507 USP17L3A6NCW0 530 aa10.62□□□□□ -0.71
CCDC88C-214ENST00000557507 USP17L4A6NCW7 530 aa10.62□□□□□ -0.71
CCDC88C-214ENST00000557507 CCDC152Q4G0S7 254 aa10.62□□□□□ -0.71
CCDC88C-214ENST00000557507 FBXO46Q6PJ61 603 aaPredicted RBP10.62□□□□□ -0.71
CCDC88C-214ENST00000557507 USP17L1Q7RTZ2 530 aa10.62□□□□□ -0.71
CCDC88C-214ENST00000557507 MYD88Q99836 296 aa10.62□□□□□ -0.71
CCDC88C-214ENST00000557507 R3HDMLQ9H3Y0 253 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms