RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 COPRSQ9NQ92 184 aa19.17■□□□□ 0.66
SHMT2-232ENST00000557487 GOLGA6L19H0YKK7 550 aa19.16■□□□□ 0.66
SHMT2-232ENST00000557487 FAM173BQ6P4H8 233 aa19.16■□□□□ 0.66
SHMT2-232ENST00000557487 SMARCC2Q8TAQ2 1214 aa19.16■□□□□ 0.66
SHMT2-232ENST00000557487 DDX54Q8TDD1 881 aaKnown RBP19.16■□□□□ 0.66
SHMT2-232ENST00000557487 TFIP11Q9UBB9 837 aaKnown RBP19.16■□□□□ 0.66
SHMT2-232ENST00000557487 CLIP2Q9UDT6 1046 aa19.16■□□□□ 0.66
SHMT2-232ENST00000557487 CHMP3Q9Y3E7 222 aa19.16■□□□□ 0.66
SHMT2-232ENST00000557487 NR1I2O75469 434 aa19.15■□□□□ 0.66
SHMT2-232ENST00000557487 STX1AQ16623 288 aa19.15■□□□□ 0.66
SHMT2-232ENST00000557487 KIF20AO95235 890 aa19.15■□□□□ 0.66
SHMT2-232ENST00000557487 TNNT1P13805 278 aa19.15■□□□□ 0.66
SHMT2-232ENST00000557487 MEX3CQ5U5Q3 659 aaKnown RBP19.15■□□□□ 0.66
SHMT2-232ENST00000557487 JARID2Q92833 1246 aaPredicted RBP19.15■□□□□ 0.66
SHMT2-232ENST00000557487 BRF1Q92994 677 aa19.15■□□□□ 0.66
SHMT2-232ENST00000557487 CGNQ9P2M7 1197 aaKnown RBP19.15■□□□□ 0.66
SHMT2-232ENST00000557487 RBM6P78332 1123 aaKnown RBP19.14■□□□□ 0.65
SHMT2-232ENST00000557487 ZNF589Q86UQ0 364 aaPredicted RBP19.14■□□□□ 0.65
SHMT2-232ENST00000557487 ARID3AQ99856 593 aa19.14■□□□□ 0.65
SHMT2-232ENST00000557487 TLR7Q9NYK1 1049 aaKnown RBP19.14■□□□□ 0.65
SHMT2-232ENST00000557487 RGS17Q9UGC6 210 aaPredicted RBP19.14■□□□□ 0.65
SHMT2-232ENST00000557487 RCOR1Q9UKL0 485 aa19.14■□□□□ 0.65
SHMT2-232ENST00000557487 PFKFB2O60825 505 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 DHX8Q14562 1220 aaKnown RBP19.13■□□□□ 0.65
SHMT2-232ENST00000557487 LMOD2Q6P5Q4 547 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 RIC3Q7Z5B4 369 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 CCDC112Q8NEF3 446 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 DNAJC25Q9H1X3 360 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 KCND1Q9NSA2 647 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 OGFRQ9NZT2 677 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 SLIT3O75094 1523 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 IQCB1Q15051 598 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 ATP2B3Q16720 1220 aa19.13■□□□□ 0.65
SHMT2-232ENST00000557487 ZNF396Q96N95 335 aaPredicted RBP19.13■□□□□ 0.65
SHMT2-232ENST00000557487 NEURL1BA8MQ27 555 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 IGKV5-2P06315 115 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 CBX1P83916 185 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 NCBP1Q09161 790 aaKnown RBP19.12■□□□□ 0.65
SHMT2-232ENST00000557487 GCKRQ14397 625 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 PDIA6Q15084 440 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 MCMDC2Q4G0Z9 681 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 KIF2AO00139 706 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-232ENST00000557487 HSP90B1P14625 803 aaKnown RBP19.12■□□□□ 0.65
SHMT2-232ENST00000557487 STK3Q13188 491 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 TPD52L1Q16890 204 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-232ENST00000557487 Q6ZUG5 572 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 TCEANC2Q96MN5 208 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 METTL22Q9BUU2 404 aaPredicted RBP19.12■□□□□ 0.65
SHMT2-232ENST00000557487 ANO10Q9NW15 660 aa19.12■□□□□ 0.65
SHMT2-232ENST00000557487 RGPD2P0DJD1 1756 aa19.11■□□□□ 0.65
SHMT2-232ENST00000557487 ADAMTS2O95450 1211 aa19.11■□□□□ 0.65
SHMT2-232ENST00000557487 LRMPQ12912 555 aa19.11■□□□□ 0.65
SHMT2-232ENST00000557487 TNNI3KQ59H18 835 aa19.11■□□□□ 0.65
SHMT2-232ENST00000557487 CCDC73Q6ZRK6 1079 aa19.11■□□□□ 0.65
SHMT2-232ENST00000557487 ARHGEF25Q86VW2 580 aa19.11■□□□□ 0.65
SHMT2-232ENST00000557487 LRRC8AQ8IWT6 810 aa19.11■□□□□ 0.65
SHMT2-232ENST00000557487 C16orf45Q96MC5 204 aaPredicted RBP19.11■□□□□ 0.65
SHMT2-232ENST00000557487 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.11■□□□□ 0.65
SHMT2-232ENST00000557487 FPGT-TNNI3KV9GXZ4 949 aa19.11■□□□□ 0.65
SHMT2-232ENST00000557487 SH3TC1Q8TE82 1336 aa19.11■□□□□ 0.65
SHMT2-232ENST00000557487 JAK2O60674 1132 aa19.1■□□□□ 0.65
SHMT2-232ENST00000557487 CACTINQ8WUQ7 758 aaKnown RBP19.1■□□□□ 0.65
SHMT2-232ENST00000557487 HAUS7Q99871 368 aa19.1■□□□□ 0.65
SHMT2-232ENST00000557487 NRBP1Q9UHY1 535 aa19.1■□□□□ 0.65
SHMT2-232ENST00000557487 TAF6LQ9Y6J9 622 aa19.1■□□□□ 0.65
SHMT2-232ENST00000557487 CABLES1Q8TDN4 633 aa19.1■□□□□ 0.65
SHMT2-232ENST00000557487 NAT10Q9H0A0 1025 aaKnown RBP19.1■□□□□ 0.65
SHMT2-232ENST00000557487 SIL1Q9H173 461 aa19.1■□□□□ 0.65
SHMT2-232ENST00000557487 PRDM10Q9NQV6 1147 aa19.1■□□□□ 0.65
SHMT2-232ENST00000557487 GSDMDP57764 484 aa19.09■□□□□ 0.65
SHMT2-232ENST00000557487 RABL6Q3YEC7 729 aaPredicted RBP19.09■□□□□ 0.65
SHMT2-232ENST00000557487 CEP135Q66GS9 1140 aa19.09■□□□□ 0.65
SHMT2-232ENST00000557487 DHX32Q7L7V1 743 aaKnown RBP19.09■□□□□ 0.65
SHMT2-232ENST00000557487 C8orf37Q96NL8 207 aa19.09■□□□□ 0.65
SHMT2-232ENST00000557487 AGXT2Q9BYV1 514 aa19.09■□□□□ 0.65
SHMT2-232ENST00000557487 PLEKHG2Q9H7P9 1386 aa19.09■□□□□ 0.65
SHMT2-232ENST00000557487 FAM177BA6PVY3 158 aa19.08■□□□□ 0.65
SHMT2-232ENST00000557487 KINO60870 393 aaKnown RBP19.08■□□□□ 0.65
SHMT2-232ENST00000557487 ADD1P35611 737 aaKnown RBP19.08■□□□□ 0.65
SHMT2-232ENST00000557487 COL9A3Q14050 684 aaPredicted RBP19.08■□□□□ 0.65
SHMT2-232ENST00000557487 ZNF772Q68DY9 489 aaPredicted RBP19.08■□□□□ 0.65
SHMT2-232ENST00000557487 CCAR1Q8IX12 1150 aaKnown RBP19.08■□□□□ 0.65
SHMT2-232ENST00000557487 FNBP4Q8N3X1 1017 aaPredicted RBP19.08■□□□□ 0.65
SHMT2-232ENST00000557487 DSCC1Q9BVC3 393 aa19.08■□□□□ 0.65
SHMT2-232ENST00000557487 HELLSQ9NRZ9 838 aa19.08■□□□□ 0.65
SHMT2-232ENST00000557487 DBNLQ9UJU6 430 aaKnown RBP19.08■□□□□ 0.65
SHMT2-232ENST00000557487 MYH15Q9Y2K3 1946 aa19.08■□□□□ 0.64
SHMT2-232ENST00000557487 ZNF609O15014 1411 aa19.08■□□□□ 0.64
SHMT2-232ENST00000557487 PALLDQ8WX93 1383 aa19.08■□□□□ 0.64
SHMT2-232ENST00000557487 BECN2A8MW95 431 aa19.08■□□□□ 0.64
SHMT2-232ENST00000557487 DTNBO60941 627 aa19.08■□□□□ 0.64
SHMT2-232ENST00000557487 CYP21A2P08686 494 aa19.08■□□□□ 0.64
SHMT2-232ENST00000557487 RFX5P48382 616 aaPredicted RBP19.08■□□□□ 0.64
SHMT2-232ENST00000557487 FAM160A1Q05DH4 1040 aa19.08■□□□□ 0.64
SHMT2-232ENST00000557487 SCRN1Q12765 414 aa19.08■□□□□ 0.64
SHMT2-232ENST00000557487 CEP57L1Q8IYX8 460 aa19.08■□□□□ 0.64
SHMT2-232ENST00000557487 ABCA3Q99758 1704 aa19.07■□□□□ 0.64
SHMT2-232ENST00000557487 FGD1P98174 961 aa19.07■□□□□ 0.64
SHMT2-232ENST00000557487 AIMP1Q12904 312 aaKnown RBP19.07■□□□□ 0.64
SHMT2-232ENST00000557487 NSUN7Q8NE18 718 aaKnown RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms