RNA–Protein interactions for RNA: ENST00000557422.1

RTN1-208, Transcript of reticulon 1, humanhuman

TSL 3

Gene RTN1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-208ENST00000557422 GGA3Q9NZ52 723 aa15.99■□□□□ 0.15
RTN1-208ENST00000557422 RASAL3Q86YV0 1011 aa15.98■□□□□ 0.15
RTN1-208ENST00000557422 DDX60Q8IY21 1712 aaKnown RBP15.98■□□□□ 0.15
RTN1-208ENST00000557422 REM2Q8IYK8 340 aaPredicted RBP15.98■□□□□ 0.15
RTN1-208ENST00000557422 FAM89AQ96GI7 184 aa15.98■□□□□ 0.15
RTN1-208ENST00000557422 EYA3Q99504 573 aa15.98■□□□□ 0.15
RTN1-208ENST00000557422 HPS5Q9UPZ3 1129 aa15.98■□□□□ 0.15
RTN1-208ENST00000557422 RIPK4P57078 832 aa15.97■□□□□ 0.15
RTN1-208ENST00000557422 TBC1D16Q8TBP0 767 aa15.97■□□□□ 0.15
RTN1-208ENST00000557422 COL4A1P02462 1669 aa15.97■□□□□ 0.15
RTN1-208ENST00000557422 SCN9AQ15858 1988 aa15.96■□□□□ 0.15
RTN1-208ENST00000557422 ISCA1Q9BUE6 129 aa15.96■□□□□ 0.15
RTN1-208ENST00000557422 ZNF280AP59817 542 aaPredicted RBP15.95■□□□□ 0.14
RTN1-208ENST00000557422 RPS8P62241 208 aaKnown RBP15.95■□□□□ 0.14
RTN1-208ENST00000557422 SCARF1Q14162 830 aa15.95■□□□□ 0.14
RTN1-208ENST00000557422 PKN2Q16513 984 aaKnown RBP15.95■□□□□ 0.14
RTN1-208ENST00000557422 KRT24Q2M2I5 525 aa15.95■□□□□ 0.14
RTN1-208ENST00000557422 ANGEL2Q5VTE6 544 aaKnown RBP15.95■□□□□ 0.14
RTN1-208ENST00000557422 PLBD2Q8NHP8 589 aa15.95■□□□□ 0.14
RTN1-208ENST00000557422 ZC3H12CQ9C0D7 883 aaKnown RBP15.95■□□□□ 0.14
RTN1-208ENST00000557422 CHPF2Q9P2E5 772 aa15.95■□□□□ 0.14
RTN1-208ENST00000557422 ATP5J2-PTCD1G3V325 749 aa15.94■□□□□ 0.14
RTN1-208ENST00000557422 FKBP1BP68106 108 aa15.94■□□□□ 0.14
RTN1-208ENST00000557422 ANKRD13DQ6ZTN6 518 aa15.94■□□□□ 0.14
RTN1-208ENST00000557422 RTL5Q5HYW3 569 aaPredicted RBP15.93■□□□□ 0.14
RTN1-208ENST00000557422 RSBN1LQ6PCB5 846 aaPredicted RBP15.93■□□□□ 0.14
RTN1-208ENST00000557422 AGBL3Q8NEM8 1001 aa15.93■□□□□ 0.14
RTN1-208ENST00000557422 PODXL2Q9NZ53 605 aa15.93■□□□□ 0.14
RTN1-208ENST00000557422 HDAC9Q9UKV0 1011 aa15.93■□□□□ 0.14
RTN1-208ENST00000557422 G3V3G9 751 aa15.92■□□□□ 0.14
RTN1-208ENST00000557422 IRS4O14654 1257 aaPredicted RBP15.92■□□□□ 0.14
RTN1-208ENST00000557422 TBC1D8O95759 1140 aa15.92■□□□□ 0.14
RTN1-208ENST00000557422 TMPOP42166 694 aaKnown RBP15.92■□□□□ 0.14
RTN1-208ENST00000557422 DCAF8Q5TAQ9 597 aa15.92■□□□□ 0.14
RTN1-208ENST00000557422 MOB2Q70IA6 237 aa15.92■□□□□ 0.14
RTN1-208ENST00000557422 ZNF296Q8WUU4 475 aaPredicted RBP15.92■□□□□ 0.14
RTN1-208ENST00000557422 GMLQ99445 158 aa15.92■□□□□ 0.14
RTN1-208ENST00000557422 PAPPA2Q9BXP8 1791 aa15.92■□□□□ 0.14
RTN1-208ENST00000557422 UBE2Q2LH0YL09 131 aa15.91■□□□□ 0.14
RTN1-208ENST00000557422 CHL1O00533 1208 aa15.91■□□□□ 0.14
RTN1-208ENST00000557422 UFL1O94874 794 aa15.91■□□□□ 0.14
RTN1-208ENST00000557422 TRIM28Q13263 835 aaKnown RBP15.91■□□□□ 0.14
RTN1-208ENST00000557422 ANKIB1Q9P2G1 1089 aa15.91■□□□□ 0.14
RTN1-208ENST00000557422 ZNF609O15014 1411 aa15.91■□□□□ 0.14
RTN1-208ENST00000557422 PITPNM2Q9BZ72 1349 aa15.91■□□□□ 0.14
RTN1-208ENST00000557422 USP17L8P0C7I0 530 aa15.9■□□□□ 0.14
RTN1-208ENST00000557422 LMOD3Q0VAK6 560 aa15.9■□□□□ 0.14
RTN1-208ENST00000557422 MYOZ2Q9NPC6 264 aa15.9■□□□□ 0.14
RTN1-208ENST00000557422 SEC31BQ9NQW1 1179 aa15.9■□□□□ 0.14
RTN1-208ENST00000557422 GGA1Q9UJY5 639 aa15.9■□□□□ 0.14
RTN1-208ENST00000557422 TM4SF4P48230 202 aa15.89■□□□□ 0.13
RTN1-208ENST00000557422 NOM1Q5C9Z4 860 aaKnown RBP15.89■□□□□ 0.13
RTN1-208ENST00000557422 HDGFL1Q5TGJ6 251 aa15.89■□□□□ 0.13
RTN1-208ENST00000557422 DBF4Q9UBU7 674 aaPredicted RBP15.89■□□□□ 0.13
RTN1-208ENST00000557422 SCAF8Q9UPN6 1271 aaKnown RBP15.89■□□□□ 0.13
RTN1-208ENST00000557422 GPR25O00155 361 aa15.88■□□□□ 0.13
RTN1-208ENST00000557422 PRAMEF18Q5VWM3 479 aa15.88■□□□□ 0.13
RTN1-208ENST00000557422 FBXO46Q6PJ61 603 aaPredicted RBP15.88■□□□□ 0.13
RTN1-208ENST00000557422 PSME4Q14997 1843 aa15.87■□□□□ 0.13
RTN1-208ENST00000557422 HOXB7P09629 217 aa15.87■□□□□ 0.13
RTN1-208ENST00000557422 ZBTB38Q8NAP3 1195 aaPredicted RBP15.87■□□□□ 0.13
RTN1-208ENST00000557422 HYPKQ9NX55 129 aa15.87■□□□□ 0.13
RTN1-208ENST00000557422 LAS1LQ9Y4W2 734 aaKnown RBP15.87■□□□□ 0.13
RTN1-208ENST00000557422 USP17L3A6NCW0 530 aa15.86■□□□□ 0.13
RTN1-208ENST00000557422 USP17L4A6NCW7 530 aa15.86■□□□□ 0.13
RTN1-208ENST00000557422 NEUROD2Q15784 382 aa15.86■□□□□ 0.13
RTN1-208ENST00000557422 NBPF9Q3BBW0 867 aa15.86■□□□□ 0.13
RTN1-208ENST00000557422 USP17L1Q7RTZ2 530 aa15.86■□□□□ 0.13
RTN1-208ENST00000557422 HSP90B1P14625 803 aaKnown RBP15.85■□□□□ 0.13
RTN1-208ENST00000557422 TTLL12Q14166 644 aaPredicted RBP15.85■□□□□ 0.13
RTN1-208ENST00000557422 CCDC152Q4G0S7 254 aa15.85■□□□□ 0.13
RTN1-208ENST00000557422 PODNQ7Z5L7 613 aa15.85■□□□□ 0.13
RTN1-208ENST00000557422 R3HDMLQ9H3Y0 253 aa15.85■□□□□ 0.13
RTN1-208ENST00000557422 WTIPA6NIX2 430 aaPredicted RBP15.84■□□□□ 0.13
RTN1-208ENST00000557422 FKTNO75072 461 aa15.84■□□□□ 0.13
RTN1-208ENST00000557422 MKRN3Q13064 507 aaKnown RBP15.84■□□□□ 0.13
RTN1-208ENST00000557422 GCC1Q96CN9 775 aa15.84■□□□□ 0.13
RTN1-208ENST00000557422 CFHR5Q9BXR6 569 aa15.84■□□□□ 0.13
RTN1-208ENST00000557422 TRIM35Q9UPQ4 493 aa15.84■□□□□ 0.13
RTN1-208ENST00000557422 XDHP47989 1333 aa15.84■□□□□ 0.13
RTN1-208ENST00000557422 ATP2B4P23634 1241 aa15.83■□□□□ 0.12
RTN1-208ENST00000557422 PTPN12Q05209 780 aaKnown RBP15.83■□□□□ 0.12
RTN1-208ENST00000557422 SREBF2Q12772 1141 aa15.83■□□□□ 0.12
RTN1-208ENST00000557422 DUSP27Q5VZP5 1158 aa15.83■□□□□ 0.12
RTN1-208ENST00000557422 RIC3Q7Z5B4 369 aa15.83■□□□□ 0.12
RTN1-208ENST00000557422 CCDC85AQ96PX6 553 aaPredicted RBP15.83■□□□□ 0.12
RTN1-208ENST00000557422 PDE8AO60658 829 aa15.82■□□□□ 0.12
RTN1-208ENST00000557422 PCCAP05165 728 aaPredicted RBP15.82■□□□□ 0.12
RTN1-208ENST00000557422 DACT2Q5SW24 774 aa15.82■□□□□ 0.12
RTN1-208ENST00000557422 ANKRD18AQ8IVF6 992 aa15.82■□□□□ 0.12
RTN1-208ENST00000557422 CCDC191Q8NCU4 936 aa15.82■□□□□ 0.12
RTN1-208ENST00000557422 JARID2Q92833 1246 aaPredicted RBP15.82■□□□□ 0.12
RTN1-208ENST00000557422 MXD3Q9BW11 206 aa15.82■□□□□ 0.12
RTN1-208ENST00000557422 WNT10BO00744 389 aa15.81■□□□□ 0.12
RTN1-208ENST00000557422 NF2P35240 595 aa15.81■□□□□ 0.12
RTN1-208ENST00000557422 GOLGA2Q08379 1002 aa15.81■□□□□ 0.12
RTN1-208ENST00000557422 CCDC146Q8IYE0 955 aa15.81■□□□□ 0.12
RTN1-208ENST00000557422 OGFOD1Q8N543 542 aa15.81■□□□□ 0.12
RTN1-208ENST00000557422 MYD88Q99836 296 aa15.81■□□□□ 0.12
RTN1-208ENST00000557422 HABP4Q5JVS0 413 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms