RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 TIMM10P62072 90 aa17.81■□□□□ 0.44
VPS33B-205ENST00000556096 TRAPPC3LQ5T215 181 aa17.81■□□□□ 0.44
VPS33B-205ENST00000556096 KIAA1211Q6ZU35 1233 aa17.81■□□□□ 0.44
VPS33B-205ENST00000556096 NEUROD6Q96NK8 337 aa17.81■□□□□ 0.44
VPS33B-205ENST00000556096 RIPOR2Q9Y4F9 1068 aa17.81■□□□□ 0.44
VPS33B-205ENST00000556096 RAD50Q92878 1312 aa17.8■□□□□ 0.44
VPS33B-205ENST00000556096 A0A1B0GUL7 405 aa17.8■□□□□ 0.44
VPS33B-205ENST00000556096 CD2BP2O95400 341 aaKnown RBP17.8■□□□□ 0.44
VPS33B-205ENST00000556096 NTSR2O95665 410 aa17.8■□□□□ 0.44
VPS33B-205ENST00000556096 HSPA4P34932 840 aa17.8■□□□□ 0.44
VPS33B-205ENST00000556096 LDHAL6AQ6ZMR3 332 aa17.8■□□□□ 0.44
VPS33B-205ENST00000556096 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.8■□□□□ 0.44
VPS33B-205ENST00000556096 CCDC85AQ96PX6 553 aaPredicted RBP17.8■□□□□ 0.44
VPS33B-205ENST00000556096 ZBTB7AO95365 584 aa17.79■□□□□ 0.44
VPS33B-205ENST00000556096 HMGB2P26583 209 aaKnown RBP17.79■□□□□ 0.44
VPS33B-205ENST00000556096 SSFA2P28290 1259 aa17.79■□□□□ 0.44
VPS33B-205ENST00000556096 MSL1Q68DK7 614 aa17.79■□□□□ 0.44
VPS33B-205ENST00000556096 FSD1Q9BTV5 496 aa17.79■□□□□ 0.44
VPS33B-205ENST00000556096 SLKQ9H2G2 1235 aaPredicted RBP17.79■□□□□ 0.44
VPS33B-205ENST00000556096 NARFQ9UHQ1 456 aa17.79■□□□□ 0.44
VPS33B-205ENST00000556096 ST18O60284 1047 aa17.78■□□□□ 0.44
VPS33B-205ENST00000556096 RFC4P35249 363 aa17.78■□□□□ 0.44
VPS33B-205ENST00000556096 USPL1Q5W0Q7 1092 aa17.78■□□□□ 0.44
VPS33B-205ENST00000556096 BCL2L12Q9HB09 334 aa17.78■□□□□ 0.44
VPS33B-205ENST00000556096 RTL9Q8NET4 1388 aa17.78■□□□□ 0.44
VPS33B-205ENST00000556096 COL24A1Q17RW2 1714 aa17.78■□□□□ 0.44
VPS33B-205ENST00000556096 QSER1Q2KHR3 1735 aa17.77■□□□□ 0.44
VPS33B-205ENST00000556096 ZPR1O75312 459 aa17.77■□□□□ 0.44
VPS33B-205ENST00000556096 HCLS1P14317 486 aaPredicted RBP17.77■□□□□ 0.44
VPS33B-205ENST00000556096 ADRA2BP18089 450 aa17.77■□□□□ 0.44
VPS33B-205ENST00000556096 NMIQ13287 307 aaPredicted RBP17.77■□□□□ 0.44
VPS33B-205ENST00000556096 LAMB2P55268 1798 aa17.76■□□□□ 0.43
VPS33B-205ENST00000556096 CASZ1Q86V15 1759 aa17.76■□□□□ 0.43
VPS33B-205ENST00000556096 RIC1Q4ADV7 1423 aa17.76■□□□□ 0.43
VPS33B-205ENST00000556096 METTL24Q5JXM2 366 aa17.76■□□□□ 0.43
VPS33B-205ENST00000556096 CNNM1Q9NRU3 951 aa17.76■□□□□ 0.43
VPS33B-205ENST00000556096 PALD1Q9ULE6 856 aa17.76■□□□□ 0.43
VPS33B-205ENST00000556096 ATF5Q9Y2D1 282 aaPredicted RBP17.76■□□□□ 0.43
VPS33B-205ENST00000556096 LRP5O75197 1615 aa17.76■□□□□ 0.43
VPS33B-205ENST00000556096 DDX60Q8IY21 1712 aaKnown RBP17.76■□□□□ 0.43
VPS33B-205ENST00000556096 CCDC152Q4G0S7 254 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 CCDC158Q5M9N0 1113 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 FAM227BQ96M60 508 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 FAM177BA6PVY3 158 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 DDIT3P35638 169 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 NBR1Q14596 966 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 VGLL2Q8N8G2 317 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 KBTBD3Q8NAB2 608 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 EDC3Q96F86 508 aaKnown RBP17.75■□□□□ 0.43
VPS33B-205ENST00000556096 XAGE2Q96GT9 111 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 DNAJC2Q99543 621 aaKnown RBP17.75■□□□□ 0.43
VPS33B-205ENST00000556096 CHMP5Q9NZZ3 219 aa17.75■□□□□ 0.43
VPS33B-205ENST00000556096 ABCC12Q96J65 1359 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 SPEF2Q9C093 1822 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 IFIT1P09914 478 aaKnown RBP17.74■□□□□ 0.43
VPS33B-205ENST00000556096 MCM2P49736 904 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 ATP2B3Q16720 1220 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 TBC1D9BQ66K14 1250 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 SPRYD3Q8NCJ5 442 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 FLAD1Q8NFF5 587 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 KCNB2Q92953 911 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 PAG1Q9NWQ8 432 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 MROH5Q6ZUA9 1318 aa17.74■□□□□ 0.43
VPS33B-205ENST00000556096 A0A0D9SFI3 127 aa17.73■□□□□ 0.43
VPS33B-205ENST00000556096 PDE8BO95263 885 aa17.73■□□□□ 0.43
VPS33B-205ENST00000556096 NEK4P51957 841 aa17.73■□□□□ 0.43
VPS33B-205ENST00000556096 CIZ1Q9ULV3 898 aaPredicted RBP17.73■□□□□ 0.43
VPS33B-205ENST00000556096 CCDC171Q6TFL3 1326 aa17.73■□□□□ 0.43
VPS33B-205ENST00000556096 MED23Q9ULK4 1368 aa17.73■□□□□ 0.43
VPS33B-205ENST00000556096 PTH1RQ03431 593 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 NFKBIBQ15653 356 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 SLC10A5Q5PT55 438 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 GORABQ5T7V8 394 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 BICDL1Q6ZP65 573 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 MAP4K1Q92918 833 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 GYS1P13807 737 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 ADORA1P30542 326 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 TTC39AQ5SRH9 613 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 ZNF512BQ96KM6 892 aaPredicted RBP17.72■□□□□ 0.43
VPS33B-205ENST00000556096 NYXQ9GZU5 481 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 SNX14Q9Y5W7 946 aa17.72■□□□□ 0.43
VPS33B-205ENST00000556096 NECTIN1Q15223 517 aa17.71■□□□□ 0.43
VPS33B-205ENST00000556096 SF3B3Q15393 1217 aaKnown RBP17.71■□□□□ 0.43
VPS33B-205ENST00000556096 DDX46Q7L014 1031 aaKnown RBP17.71■□□□□ 0.43
VPS33B-205ENST00000556096 NDUFB9Q9Y6M9 179 aa17.71■□□□□ 0.43
VPS33B-205ENST00000556096 GOLIM4O00461 696 aa17.7■□□□□ 0.42
VPS33B-205ENST00000556096 HSP90AA1P07900 732 aaKnown RBP17.7■□□□□ 0.42
VPS33B-205ENST00000556096 ERFEQ4G0M1 354 aa17.7■□□□□ 0.42
VPS33B-205ENST00000556096 SETDB2Q96T68 719 aa17.7■□□□□ 0.42
VPS33B-205ENST00000556096 MPHOSPH8Q99549 860 aa17.7■□□□□ 0.42
VPS33B-205ENST00000556096 FGFR2P21802 821 aa17.69■□□□□ 0.42
VPS33B-205ENST00000556096 IGHMBP2P38935 993 aaKnown RBP17.69■□□□□ 0.42
VPS33B-205ENST00000556096 PUM3Q15397 648 aaKnown RBP17.69■□□□□ 0.42
VPS33B-205ENST00000556096 MCMDC2Q4G0Z9 681 aa17.69■□□□□ 0.42
VPS33B-205ENST00000556096 SEC31BQ9NQW1 1179 aa17.69■□□□□ 0.42
VPS33B-205ENST00000556096 LRRFIP1Q32MZ4 808 aaKnown RBP17.69■□□□□ 0.42
VPS33B-205ENST00000556096 RASEFQ8IZ41 740 aa17.69■□□□□ 0.42
VPS33B-205ENST00000556096 LPIN2Q92539 896 aa17.69■□□□□ 0.42
VPS33B-205ENST00000556096 CDC5LQ99459 802 aaKnown RBP17.69■□□□□ 0.42
VPS33B-205ENST00000556096 TM6SF1Q9BZW5 370 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms