RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 MPHOSPH8Q99549 860 aa26.06■■□□□ 1.76
CCDC88C-210ENST00000555995 TNIP1Q15025 636 aa26.05■■□□□ 1.76
CCDC88C-210ENST00000555995 PNMA8AQ86V59 439 aaPredicted RBP26.05■■□□□ 1.76
CCDC88C-210ENST00000555995 API5Q9BZZ5 524 aaKnown RBP26.05■■□□□ 1.76
CCDC88C-210ENST00000555995 ZC3H12CQ9C0D7 883 aaKnown RBP26.05■■□□□ 1.76
CCDC88C-210ENST00000555995 POLLQ9UGP5 575 aa26.05■■□□□ 1.76
CCDC88C-210ENST00000555995 GJA3Q9Y6H8 435 aa26.05■■□□□ 1.76
CCDC88C-210ENST00000555995 ZBED9Q6R2W3 1325 aa26.05■■□□□ 1.76
CCDC88C-210ENST00000555995 ATP2B4P23634 1241 aa26.04■■□□□ 1.76
CCDC88C-210ENST00000555995 IFIT5Q13325 482 aaKnown RBP26.04■■□□□ 1.76
CCDC88C-210ENST00000555995 TAF1DQ9H5J8 278 aaPredicted RBP26.04■■□□□ 1.76
CCDC88C-210ENST00000555995 UTYO14607 1347 aa26.04■■□□□ 1.76
CCDC88C-210ENST00000555995 CIAPIN1Q6FI81 312 aa26.03■■□□□ 1.76
CCDC88C-210ENST00000555995 CHMP3Q9Y3E7 222 aa26.03■■□□□ 1.76
CCDC88C-210ENST00000555995 G3V3G9 751 aa26.02■■□□□ 1.76
CCDC88C-210ENST00000555995 CCT4P50991 539 aaKnown RBP26.02■■□□□ 1.76
CCDC88C-210ENST00000555995 RARSP54136 660 aaKnown RBP26.02■■□□□ 1.76
CCDC88C-210ENST00000555995 FOXO4P98177 505 aa26.02■■□□□ 1.76
CCDC88C-210ENST00000555995 DCAF8Q5TAQ9 597 aa26.02■■□□□ 1.76
CCDC88C-210ENST00000555995 ANKRD2Q9GZV1 360 aa26.02■■□□□ 1.76
CCDC88C-210ENST00000555995 EPHX2P34913 555 aa26.01■■□□□ 1.75
CCDC88C-210ENST00000555995 APLP1P51693 650 aa26.01■■□□□ 1.75
CCDC88C-210ENST00000555995 CXCL9Q07325 125 aa26.01■■□□□ 1.75
CCDC88C-210ENST00000555995 CCDC57Q2TAC2 916 aa26.01■■□□□ 1.75
CCDC88C-210ENST00000555995 LDHDQ86WU2 507 aa26.01■■□□□ 1.75
CCDC88C-210ENST00000555995 MINPP1Q9UNW1 487 aa26.01■■□□□ 1.75
CCDC88C-210ENST00000555995 CHADLQ6NUI6 762 aa26■■□□□ 1.75
CCDC88C-210ENST00000555995 LMBR1LQ6UX01 489 aa26■■□□□ 1.75
CCDC88C-210ENST00000555995 ARHGAP45Q92619 1136 aa26■■□□□ 1.75
CCDC88C-210ENST00000555995 MED23Q9ULK4 1368 aa25.99■■□□□ 1.75
CCDC88C-210ENST00000555995 RIMBP2O15034 1052 aa25.99■■□□□ 1.75
CCDC88C-210ENST00000555995 TAF7LQ5H9L4 462 aa25.99■■□□□ 1.75
CCDC88C-210ENST00000555995 LEMD3Q9Y2U8 911 aa25.99■■□□□ 1.75
CCDC88C-210ENST00000555995 PSME4Q14997 1843 aa25.98■■□□□ 1.75
CCDC88C-210ENST00000555995 ADAMTSL1Q8N6G6 1762 aa25.98■■□□□ 1.75
CCDC88C-210ENST00000555995 IPO8O15397 1037 aaKnown RBP25.98■■□□□ 1.75
CCDC88C-210ENST00000555995 ECE2O60344 883 aa25.98■■□□□ 1.75
CCDC88C-210ENST00000555995 NOB1Q9ULX3 412 aaKnown RBP25.98■■□□□ 1.75
CCDC88C-210ENST00000555995 HDAC5Q9UQL6 1122 aa25.98■■□□□ 1.75
CCDC88C-210ENST00000555995 NBPF7P0C2Y1 421 aaPredicted RBP25.97■■□□□ 1.75
CCDC88C-210ENST00000555995 SCNN1DP51172 638 aa25.97■■□□□ 1.75
CCDC88C-210ENST00000555995 DBNDD1Q9H9R9 158 aa25.97■■□□□ 1.75
CCDC88C-210ENST00000555995 A0A1B0GUL6 1792 aa25.97■■□□□ 1.75
CCDC88C-210ENST00000555995 RAD17O75943 681 aa25.96■■□□□ 1.75
CCDC88C-210ENST00000555995 EAPPQ56P03 285 aaPredicted RBP25.96■■□□□ 1.75
CCDC88C-210ENST00000555995 SUCLG2Q96I99 432 aa25.96■■□□□ 1.75
CCDC88C-210ENST00000555995 YDJCA8MPS7 323 aa25.95■■□□□ 1.74
CCDC88C-210ENST00000555995 USP50Q70EL3 339 aaPredicted RBP25.95■■□□□ 1.74
CCDC88C-210ENST00000555995 GPRC5DQ9NZD1 345 aa25.95■■□□□ 1.74
CCDC88C-210ENST00000555995 RPS12P25398 132 aaKnown RBP25.94■■□□□ 1.74
CCDC88C-210ENST00000555995 RABL6Q3YEC7 729 aaPredicted RBP25.94■■□□□ 1.74
CCDC88C-210ENST00000555995 EPHA10Q5JZY3 1008 aa25.94■■□□□ 1.74
CCDC88C-210ENST00000555995 ADARB2Q9NS39 739 aaKnown RBP25.94■■□□□ 1.74
CCDC88C-210ENST00000555995 KCNJ4P48050 445 aa25.93■■□□□ 1.74
CCDC88C-210ENST00000555995 GMPSP49915 693 aaPredicted RBP25.93■■□□□ 1.74
CCDC88C-210ENST00000555995 CHRNDQ07001 517 aa25.93■■□□□ 1.74
CCDC88C-210ENST00000555995 PODNQ7Z5L7 613 aa25.93■■□□□ 1.74
CCDC88C-210ENST00000555995 GPR101Q96P66 508 aaPredicted RBP25.93■■□□□ 1.74
CCDC88C-210ENST00000555995 USP44Q9H0E7 712 aa25.93■■□□□ 1.74
CCDC88C-210ENST00000555995 CLEC11AQ9Y240 323 aa25.93■■□□□ 1.74
CCDC88C-210ENST00000555995 ZNF804BA4D1E1 1349 aa25.92■■□□□ 1.74
CCDC88C-210ENST00000555995 ZNF609O15014 1411 aa25.92■■□□□ 1.74
CCDC88C-210ENST00000555995 DOK7Q18PE1 504 aa25.92■■□□□ 1.74
CCDC88C-210ENST00000555995 LDHAL6AQ6ZMR3 332 aa25.92■■□□□ 1.74
CCDC88C-210ENST00000555995 DPF2Q92785 391 aa25.92■■□□□ 1.74
CCDC88C-210ENST00000555995 BICC1Q9H694 974 aaKnown RBP25.92■■□□□ 1.74
CCDC88C-210ENST00000555995 CNNM1Q9NRU3 951 aa25.92■■□□□ 1.74
CCDC88C-210ENST00000555995 SCN9AQ15858 1988 aa25.91■■□□□ 1.74
CCDC88C-210ENST00000555995 PSMD14O00487 310 aa25.9■■□□□ 1.74
CCDC88C-210ENST00000555995 UBTFL1P0CB47 393 aaPredicted RBP25.9■■□□□ 1.74
CCDC88C-210ENST00000555995 POTEIP0CG38 1075 aa25.9■■□□□ 1.74
CCDC88C-210ENST00000555995 POTEJP0CG39 1038 aa25.9■■□□□ 1.74
CCDC88C-210ENST00000555995 EPS15P42566 896 aa25.9■■□□□ 1.74
CCDC88C-210ENST00000555995 KAZALD1Q96I82 304 aa25.9■■□□□ 1.74
CCDC88C-210ENST00000555995 COA1Q9GZY4 146 aa25.9■■□□□ 1.74
CCDC88C-210ENST00000555995 H7C1D1 291 aa25.89■■□□□ 1.74
CCDC88C-210ENST00000555995 VIL1P09327 827 aaKnown RBP25.87■■□□□ 1.73
CCDC88C-210ENST00000555995 INTS3Q68E01 1043 aaKnown RBP25.87■■□□□ 1.73
CCDC88C-210ENST00000555995 ATF7IPQ6VMQ6 1270 aa25.87■■□□□ 1.73
CCDC88C-210ENST00000555995 ANKRD44Q8N8A2 993 aa25.87■■□□□ 1.73
CCDC88C-210ENST00000555995 CNOT7Q9UIV1 285 aaKnown RBP25.87■■□□□ 1.73
CCDC88C-210ENST00000555995 C15orf52Q6ZUT6 534 aaKnown RBP25.86■■□□□ 1.73
CCDC88C-210ENST00000555995 AGBL3Q8NEM8 1001 aa25.86■■□□□ 1.73
CCDC88C-210ENST00000555995 FRAT1Q92837 279 aaPredicted RBP25.86■■□□□ 1.73
CCDC88C-210ENST00000555995 MROH5Q6ZUA9 1318 aa25.86■■□□□ 1.73
CCDC88C-210ENST00000555995 USP17L3A6NCW0 530 aa25.85■■□□□ 1.73
CCDC88C-210ENST00000555995 USP17L4A6NCW7 530 aa25.85■■□□□ 1.73
CCDC88C-210ENST00000555995 GNAI3P08754 354 aa25.85■■□□□ 1.73
CCDC88C-210ENST00000555995 ZKSCAN2Q63HK3 967 aa25.85■■□□□ 1.73
CCDC88C-210ENST00000555995 USP17L1Q7RTZ2 530 aa25.85■■□□□ 1.73
CCDC88C-210ENST00000555995 MICALL2Q8IY33 904 aa25.85■■□□□ 1.73
CCDC88C-210ENST00000555995 ZNF594Q96JF6 807 aaPredicted RBP25.85■■□□□ 1.73
CCDC88C-210ENST00000555995 MYO3BQ8WXR4 1341 aa25.85■■□□□ 1.73
CCDC88C-210ENST00000555995 BCAR3O75815 825 aa25.84■■□□□ 1.73
CCDC88C-210ENST00000555995 TRIM27P14373 513 aa25.84■■□□□ 1.73
CCDC88C-210ENST00000555995 ZC3H15Q8WU90 426 aaKnown RBP25.84■■□□□ 1.73
CCDC88C-210ENST00000555995 RSBN1LQ6PCB5 846 aaPredicted RBP25.83■■□□□ 1.73
CCDC88C-210ENST00000555995 ZNF804AQ7Z570 1209 aa25.83■■□□□ 1.73
CCDC88C-210ENST00000555995 ZBTB12Q9Y330 459 aaPredicted RBP25.83■■□□□ 1.73
CCDC88C-210ENST00000555995 PASKQ96RG2 1323 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms