RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 L3MBTL3Q96JM7 780 aaPredicted RBP18.06■□□□□ 0.48
CCDC88C-207ENST00000554051 C6orf229H3BNL8 230 aa18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 UFL1O94874 794 aa18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 TRIM27P14373 513 aa18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 VEGFAP15692 232 aaPredicted RBP18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 AOC3Q16853 763 aa18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 WASHC4Q2M389 1173 aa18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 FRAT1Q92837 279 aaPredicted RBP18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 SUCLG2Q96I99 432 aa18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 USP44Q9H0E7 712 aa18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 ZNRF3Q9ULT6 936 aa18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 COL4A5P29400 1685 aa18.05■□□□□ 0.48
CCDC88C-207ENST00000554051 MED23Q9ULK4 1368 aa18.04■□□□□ 0.48
CCDC88C-207ENST00000554051 BCAR3O75815 825 aa18.04■□□□□ 0.48
CCDC88C-207ENST00000554051 GNAI3P08754 354 aa18.04■□□□□ 0.48
CCDC88C-207ENST00000554051 MS4A1P11836 297 aa18.04■□□□□ 0.48
CCDC88C-207ENST00000554051 FTSJ3Q8IY81 847 aaKnown RBP18.04■□□□□ 0.48
CCDC88C-207ENST00000554051 TBC1D16Q8TBP0 767 aa18.04■□□□□ 0.48
CCDC88C-207ENST00000554051 A0A1B0GUL6 1792 aa18.04■□□□□ 0.48
CCDC88C-207ENST00000554051 ZNF541Q9H0D2 1346 aa18.03■□□□□ 0.48
CCDC88C-207ENST00000554051 KIF3CO14782 793 aa18.03■□□□□ 0.48
CCDC88C-207ENST00000554051 ZC3H12CQ9C0D7 883 aaKnown RBP18.03■□□□□ 0.48
CCDC88C-207ENST00000554051 NMRK2Q9NPI5 230 aa18.03■□□□□ 0.48
CCDC88C-207ENST00000554051 MINPP1Q9UNW1 487 aa18.03■□□□□ 0.48
CCDC88C-207ENST00000554051 LEMD3Q9Y2U8 911 aa18.03■□□□□ 0.48
CCDC88C-207ENST00000554051 TNIP1Q15025 636 aa18.02■□□□□ 0.48
CCDC88C-207ENST00000554051 BICC1Q9H694 974 aaKnown RBP18.02■□□□□ 0.48
CCDC88C-207ENST00000554051 POLLQ9UGP5 575 aa18.02■□□□□ 0.48
CCDC88C-207ENST00000554051 G3V3G9 751 aa18.01■□□□□ 0.47
CCDC88C-207ENST00000554051 TOMM70O94826 608 aa18.01■□□□□ 0.47
CCDC88C-207ENST00000554051 EPHA10Q5JZY3 1008 aa18.01■□□□□ 0.47
CCDC88C-207ENST00000554051 DCAF8Q5TAQ9 597 aa18.01■□□□□ 0.47
CCDC88C-207ENST00000554051 SLC51AQ86UW1 340 aa18.01■□□□□ 0.47
CCDC88C-207ENST00000554051 RBM46Q8TBY0 533 aaKnown RBP18.01■□□□□ 0.47
CCDC88C-207ENST00000554051 KAZALD1Q96I82 304 aa18.01■□□□□ 0.47
CCDC88C-207ENST00000554051 ZNF609O15014 1411 aa18■□□□□ 0.47
CCDC88C-207ENST00000554051 DDNO94850 711 aaPredicted RBP18■□□□□ 0.47
CCDC88C-207ENST00000554051 LMOD1P29536 600 aaPredicted RBP18■□□□□ 0.47
CCDC88C-207ENST00000554051 KCNJ4P48050 445 aa18■□□□□ 0.47
CCDC88C-207ENST00000554051 LDHAL6AQ6ZMR3 332 aa18■□□□□ 0.47
CCDC88C-207ENST00000554051 ANKRD44Q8N8A2 993 aa18■□□□□ 0.47
CCDC88C-207ENST00000554051 CNNM1Q9NRU3 951 aa18■□□□□ 0.47
CCDC88C-207ENST00000554051 CHRNDQ07001 517 aa17.99■□□□□ 0.47
CCDC88C-207ENST00000554051 CIAPIN1Q6FI81 312 aa17.99■□□□□ 0.47
CCDC88C-207ENST00000554051 DZIP1LQ8IYY4 767 aaKnown RBP17.99■□□□□ 0.47
CCDC88C-207ENST00000554051 RRAGCQ9HB90 399 aa17.99■□□□□ 0.47
CCDC88C-207ENST00000554051 ZNF804BA4D1E1 1349 aa17.98■□□□□ 0.47
CCDC88C-207ENST00000554051 MROH5Q6ZUA9 1318 aa17.98■□□□□ 0.47
CCDC88C-207ENST00000554051 PSME4Q14997 1843 aa17.98■□□□□ 0.47
CCDC88C-207ENST00000554051 C1QTNF8P60827 252 aa17.98■□□□□ 0.47
CCDC88C-207ENST00000554051 HACL1Q9UJ83 578 aa17.98■□□□□ 0.47
CCDC88C-207ENST00000554051 FBXO3Q9UK99 471 aa17.98■□□□□ 0.47
CCDC88C-207ENST00000554051 RCAN3Q9UKA8 241 aa17.98■□□□□ 0.47
CCDC88C-207ENST00000554051 ECE2O60344 883 aa17.97■□□□□ 0.47
CCDC88C-207ENST00000554051 FSTL1Q12841 308 aa17.97■□□□□ 0.47
CCDC88C-207ENST00000554051 PNMA8AQ86V59 439 aaPredicted RBP17.97■□□□□ 0.47
CCDC88C-207ENST00000554051 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.97■□□□□ 0.47
CCDC88C-207ENST00000554051 SMC1BQ8NDV3 1235 aa17.97■□□□□ 0.47
CCDC88C-207ENST00000554051 MEIS3Q99687 375 aa17.97■□□□□ 0.47
CCDC88C-207ENST00000554051 RPS12P25398 132 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-207ENST00000554051 C15orf52Q6ZUT6 534 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-207ENST00000554051 PODNQ7Z5L7 613 aa17.96■□□□□ 0.47
CCDC88C-207ENST00000554051 CLUAP1Q96AJ1 413 aa17.96■□□□□ 0.47
CCDC88C-207ENST00000554051 COA1Q9GZY4 146 aa17.96■□□□□ 0.47
CCDC88C-207ENST00000554051 CHMP4BQ9H444 224 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-207ENST00000554051 DBNDD1Q9H9R9 158 aa17.96■□□□□ 0.47
CCDC88C-207ENST00000554051 GJA3Q9Y6H8 435 aa17.96■□□□□ 0.47
CCDC88C-207ENST00000554051 RIMBP2O15034 1052 aa17.95■□□□□ 0.46
CCDC88C-207ENST00000554051 GNAI2P04899 355 aa17.95■□□□□ 0.46
CCDC88C-207ENST00000554051 CXCL9Q07325 125 aa17.95■□□□□ 0.46
CCDC88C-207ENST00000554051 TMEM57Q8N5G2 664 aa17.95■□□□□ 0.46
CCDC88C-207ENST00000554051 LRRFIP2Q9Y608 721 aaKnown RBP17.95■□□□□ 0.46
CCDC88C-207ENST00000554051 MTX1Q13505 466 aa17.94■□□□□ 0.46
CCDC88C-207ENST00000554051 ITPRIPQ8IWB1 547 aa17.94■□□□□ 0.46
CCDC88C-207ENST00000554051 TAF1DQ9H5J8 278 aaPredicted RBP17.94■□□□□ 0.46
CCDC88C-207ENST00000554051 MYO3BQ8WXR4 1341 aa17.94■□□□□ 0.46
CCDC88C-207ENST00000554051 ADAMTSL1Q8N6G6 1762 aa17.94■□□□□ 0.46
CCDC88C-207ENST00000554051 YDJCA8MPS7 323 aa17.93■□□□□ 0.46
CCDC88C-207ENST00000554051 POTECB2RU33 542 aa17.93■□□□□ 0.46
CCDC88C-207ENST00000554051 CIAO1O76071 339 aa17.93■□□□□ 0.46
CCDC88C-207ENST00000554051 EPHX2P34913 555 aa17.93■□□□□ 0.46
CCDC88C-207ENST00000554051 ZNF804AQ7Z570 1209 aa17.93■□□□□ 0.46
CCDC88C-207ENST00000554051 LDHDQ86WU2 507 aa17.93■□□□□ 0.46
CCDC88C-207ENST00000554051 ZNF594Q96JF6 807 aaPredicted RBP17.93■□□□□ 0.46
CCDC88C-207ENST00000554051 RAD17O75943 681 aa17.92■□□□□ 0.46
CCDC88C-207ENST00000554051 SCNN1DP51172 638 aa17.92■□□□□ 0.46
CCDC88C-207ENST00000554051 UBE4AQ14139 1066 aa17.92■□□□□ 0.46
CCDC88C-207ENST00000554051 METTL24Q5JXM2 366 aa17.92■□□□□ 0.46
CCDC88C-207ENST00000554051 DPF2Q92785 391 aa17.92■□□□□ 0.46
CCDC88C-207ENST00000554051 GPRC5DQ9NZD1 345 aa17.92■□□□□ 0.46
CCDC88C-207ENST00000554051 EYA2O00167 538 aa17.91■□□□□ 0.46
CCDC88C-207ENST00000554051 MMP14P50281 582 aa17.91■□□□□ 0.46
CCDC88C-207ENST00000554051 DOK7Q18PE1 504 aa17.91■□□□□ 0.46
CCDC88C-207ENST00000554051 USP50Q70EL3 339 aaPredicted RBP17.91■□□□□ 0.46
CCDC88C-207ENST00000554051 GPR101Q96P66 508 aaPredicted RBP17.91■□□□□ 0.46
CCDC88C-207ENST00000554051 ADARB2Q9NS39 739 aaKnown RBP17.91■□□□□ 0.46
CCDC88C-207ENST00000554051 RIPOR2Q9Y4F9 1068 aa17.91■□□□□ 0.46
CCDC88C-207ENST00000554051 RFX5P48382 616 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-207ENST00000554051 GMPSP49915 693 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-207ENST00000554051 AGBL3Q8NEM8 1001 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms