RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 C12orf49Q9H741 205 aa8.03□□□□□ -1.12
LIMA1-205ENST00000550592 KANSL3Q9P2N6 904 aa8.03□□□□□ -1.12
LIMA1-205ENST00000550592 PRR12Q9ULL5 1215 aa8.03□□□□□ -1.12
LIMA1-205ENST00000550592 A0A1W2PP55 124 aa8.02□□□□□ -1.13
LIMA1-205ENST00000550592 SCAMP3O14828 347 aaKnown RBP8.02□□□□□ -1.13
LIMA1-205ENST00000550592 NRLP54845 237 aa8.02□□□□□ -1.13
LIMA1-205ENST00000550592 HYAL2Q12891 473 aa8.02□□□□□ -1.13
LIMA1-205ENST00000550592 COL13A1Q5TAT6 717 aaPredicted RBP8.02□□□□□ -1.13
LIMA1-205ENST00000550592 TRPM4Q8TD43 1214 aa8.02□□□□□ -1.13
LIMA1-205ENST00000550592 SUV39H2Q9H5I1 410 aa8.02□□□□□ -1.13
LIMA1-205ENST00000550592 ZBTB42B2RXF5 422 aa8.01□□□□□ -1.13
LIMA1-205ENST00000550592 SIN3BO75182 1162 aa8.01□□□□□ -1.13
LIMA1-205ENST00000550592 GADD45BO75293 160 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-205ENST00000550592 CTSHP09668 335 aa8.01□□□□□ -1.13
LIMA1-205ENST00000550592 BMP4P12644 408 aa8.01□□□□□ -1.13
LIMA1-205ENST00000550592 ZNF468Q5VIY5 522 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-205ENST00000550592 CEP120Q8N960 986 aa8.01□□□□□ -1.13
LIMA1-205ENST00000550592 TMEM87AQ8NBN3 555 aa8.01□□□□□ -1.13
LIMA1-205ENST00000550592 BCO2Q9BYV7 579 aa8.01□□□□□ -1.13
LIMA1-205ENST00000550592 AVENQ9NQS1 362 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-205ENST00000550592 H3BM21 787 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 MX2P20592 715 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 GPLD1P80108 840 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 GAS6Q14393 721 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 GRM2Q14416 872 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 NXPE4Q6UWF7 544 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 SYT9Q86SS6 491 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 NCAPG2Q86XI2 1143 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 CRELD1Q96HD1 420 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 LATS2Q9NRM7 1088 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 FAM8A1Q9UBU6 413 aa8□□□□□ -1.13
LIMA1-205ENST00000550592 LOC102724428A0A0B4J2F2 783 aa7.99□□□□□ -1.13
LIMA1-205ENST00000550592 SIK1P57059 783 aa7.99□□□□□ -1.13
LIMA1-205ENST00000550592 PCSK7Q16549 785 aa7.99□□□□□ -1.13
LIMA1-205ENST00000550592 GPR161Q8N6U8 529 aaKnown RBP7.99□□□□□ -1.13
LIMA1-205ENST00000550592 GLIS3Q8NEA6 775 aa7.99□□□□□ -1.13
LIMA1-205ENST00000550592 METTL5Q9NRN9 209 aaKnown RBP7.99□□□□□ -1.13
LIMA1-205ENST00000550592 PPP4R2Q9NY27 417 aa7.99□□□□□ -1.13
LIMA1-205ENST00000550592 TRAK1Q9UPV9 953 aa7.99□□□□□ -1.13
LIMA1-205ENST00000550592 VSIG8P0DPA2 414 aa7.98□□□□□ -1.13
LIMA1-205ENST00000550592 PRPF40BQ6NWY9 871 aaKnown RBP7.98□□□□□ -1.13
LIMA1-205ENST00000550592 TNFRSF25Q93038 417 aa7.98□□□□□ -1.13
LIMA1-205ENST00000550592 CNTNAP3BQ96NU0 1288 aa7.98□□□□□ -1.13
LIMA1-205ENST00000550592 NSUN5Q96P11 429 aaKnown RBP7.98□□□□□ -1.13
LIMA1-205ENST00000550592 OSMRQ99650 979 aa7.98□□□□□ -1.13
LIMA1-205ENST00000550592 CNTNAP3Q9BZ76 1288 aa7.98□□□□□ -1.13
LIMA1-205ENST00000550592 EHD4Q9H223 541 aa7.98□□□□□ -1.13
LIMA1-205ENST00000550592 DZANK1Q9NVP4 752 aa7.98□□□□□ -1.13
LIMA1-205ENST00000550592 DNAJB12Q9NXW2 375 aaKnown RBP7.98□□□□□ -1.13
LIMA1-205ENST00000550592 KLF15Q9UIH9 416 aa7.98□□□□□ -1.13
LIMA1-205ENST00000550592 USP31Q70CQ4 1352 aa7.97□□□□□ -1.13
LIMA1-205ENST00000550592 NFKBIEO00221 500 aa7.97□□□□□ -1.13
LIMA1-205ENST00000550592 ARAFP10398 606 aa7.97□□□□□ -1.13
LIMA1-205ENST00000550592 PCBP4P57723 403 aaKnown RBP7.97□□□□□ -1.13
LIMA1-205ENST00000550592 HDLBPQ00341 1268 aaKnown RBP7.97□□□□□ -1.13
LIMA1-205ENST00000550592 CCNJLQ8IV13 435 aa7.97□□□□□ -1.13
LIMA1-205ENST00000550592 SPACA7Q96KW9 195 aa7.97□□□□□ -1.13
LIMA1-205ENST00000550592 TCF12Q99081 682 aa7.97□□□□□ -1.13
LIMA1-205ENST00000550592 ZKSCAN3Q9BRR0 538 aa7.97□□□□□ -1.13
LIMA1-205ENST00000550592 MBIPQ9NS73 344 aa7.97□□□□□ -1.13
LIMA1-205ENST00000550592 J3QW42 95 aa7.96□□□□□ -1.14
LIMA1-205ENST00000550592 USP17L7P0C7H9 530 aa7.96□□□□□ -1.14
LIMA1-205ENST00000550592 MAP2K3P46734 347 aa7.96□□□□□ -1.14
LIMA1-205ENST00000550592 FANCCQ00597 558 aa7.96□□□□□ -1.14
LIMA1-205ENST00000550592 METTL16Q86W50 562 aaKnown RBP7.96□□□□□ -1.14
LIMA1-205ENST00000550592 MDFIQ99750 246 aa7.96□□□□□ -1.14
LIMA1-205ENST00000550592 UBE2OQ9C0C9 1292 aaKnown RBP7.96□□□□□ -1.14
LIMA1-205ENST00000550592 IGFLR1Q9H665 355 aa7.96□□□□□ -1.14
LIMA1-205ENST00000550592 LIN7BQ9HAP6 207 aa7.96□□□□□ -1.14
LIMA1-205ENST00000550592 NSFL1CQ9UNZ2 370 aaKnown RBP7.96□□□□□ -1.14
LIMA1-205ENST00000550592 ADARB2-AS1A8MUL3 147 aa7.95□□□□□ -1.14
LIMA1-205ENST00000550592 ACPPP15309 386 aa7.95□□□□□ -1.14
LIMA1-205ENST00000550592 ADH6P28332 368 aa7.95□□□□□ -1.14
LIMA1-205ENST00000550592 GSTT1P30711 240 aa7.95□□□□□ -1.14
LIMA1-205ENST00000550592 ST13P50502 369 aaKnown RBP7.95□□□□□ -1.14
LIMA1-205ENST00000550592 MLLT1Q03111 559 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-205ENST00000550592 TAF1CQ15572 869 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-205ENST00000550592 ZNF787Q6DD87 383 aa7.95□□□□□ -1.14
LIMA1-205ENST00000550592 TMEM102Q8N9M5 508 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-205ENST00000550592 C3orf58Q8NDZ4 430 aa7.95□□□□□ -1.14
LIMA1-205ENST00000550592 PBX4Q9BYU1 374 aa7.95□□□□□ -1.14
LIMA1-205ENST00000550592 BHLHE41Q9C0J9 482 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-205ENST00000550592 ABCB6Q9NP58 842 aa7.95□□□□□ -1.14
LIMA1-205ENST00000550592 TMEM238LA0A1B0GVL6 79 aa7.94□□□□□ -1.14
LIMA1-205ENST00000550592 TERTO14746 1132 aaKnown RBP7.94□□□□□ -1.14
LIMA1-205ENST00000550592 XRCC5P13010 732 aaKnown RBP7.94□□□□□ -1.14
LIMA1-205ENST00000550592 ZNF76P36508 570 aa7.94□□□□□ -1.14
LIMA1-205ENST00000550592 HFE2Q6ZVN8 426 aa7.94□□□□□ -1.14
LIMA1-205ENST00000550592 ANKRD24Q8TF21 1146 aa7.94□□□□□ -1.14
LIMA1-205ENST00000550592 RNF34Q969K3 372 aa7.94□□□□□ -1.14
LIMA1-205ENST00000550592 NXPE3Q969Y0 559 aa7.94□□□□□ -1.14
LIMA1-205ENST00000550592 TRPA1O75762 1119 aa7.93□□□□□ -1.14
LIMA1-205ENST00000550592 GHRHP01286 108 aa7.93□□□□□ -1.14
LIMA1-205ENST00000550592 MEI1Q5TIA1 1274 aa7.93□□□□□ -1.14
LIMA1-205ENST00000550592 COL25A1Q9BXS0 654 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-205ENST00000550592 RBSNQ9H1K0 784 aa7.93□□□□□ -1.14
LIMA1-205ENST00000550592 RASSF4Q9H2L5 321 aa7.93□□□□□ -1.14
LIMA1-205ENST00000550592 ZFYVE1Q9HBF4 777 aa7.93□□□□□ -1.14
LIMA1-205ENST00000550592 SLC6A14Q9UN76 642 aa7.93□□□□□ -1.14
LIMA1-205ENST00000550592 PDE2AO00408 941 aaPredicted RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms