RNA–Protein interactions for RNA: ENST00000550208.1

BRF1-216, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 3

Gene BRF1, Length 1,040 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-216ENST00000550208 SPEF2Q9C093 1822 aa28.21■■■□□ 2.11
BRF1-216ENST00000550208 C6orf229H3BNL8 230 aa28.21■■■□□ 2.11
BRF1-216ENST00000550208 C20orf194Q5TEA3 1177 aa28.21■■■□□ 2.11
BRF1-216ENST00000550208 LDHAL6AQ6ZMR3 332 aa28.21■■■□□ 2.11
BRF1-216ENST00000550208 TBC1D16Q8TBP0 767 aa28.21■■■□□ 2.11
BRF1-216ENST00000550208 GNAI2P04899 355 aa28.2■■■□□ 2.1
BRF1-216ENST00000550208 AOC3Q16853 763 aa28.2■■■□□ 2.1
BRF1-216ENST00000550208 KLHDC4Q8TBB5 520 aa28.2■■■□□ 2.1
BRF1-216ENST00000550208 GPR101Q96P66 508 aaPredicted RBP28.2■■■□□ 2.1
BRF1-216ENST00000550208 PUS3Q9BZE2 481 aaKnown RBP28.2■■■□□ 2.1
BRF1-216ENST00000550208 COG6Q9Y2V7 657 aa28.2■■■□□ 2.1
BRF1-216ENST00000550208 WTIPA6NIX2 430 aaPredicted RBP28.19■■■□□ 2.1
BRF1-216ENST00000550208 PPIP5K2O43314 1243 aa28.19■■■□□ 2.1
BRF1-216ENST00000550208 RFX5P48382 616 aaPredicted RBP28.19■■■□□ 2.1
BRF1-216ENST00000550208 LARGE2Q8N3Y3 721 aa28.19■■■□□ 2.1
BRF1-216ENST00000550208 VPS33BQ9H267 617 aa28.19■■■□□ 2.1
BRF1-216ENST00000550208 GGA1Q9UJY5 639 aa28.19■■■□□ 2.1
BRF1-216ENST00000550208 XDHP47989 1333 aa28.18■■■□□ 2.1
BRF1-216ENST00000550208 UFL1O94874 794 aa28.18■■■□□ 2.1
BRF1-216ENST00000550208 CHRNDQ07001 517 aa28.18■■■□□ 2.1
BRF1-216ENST00000550208 PDE3AQ14432 1141 aa28.18■■■□□ 2.1
BRF1-216ENST00000550208 CNNM1Q9NRU3 951 aa28.18■■■□□ 2.1
BRF1-216ENST00000550208 DICER1Q9UPY3 1922 aaKnown RBP28.18■■■□□ 2.1
BRF1-216ENST00000550208 RIMBP2O15034 1052 aa28.17■■■□□ 2.1
BRF1-216ENST00000550208 ATP2B4P23634 1241 aa28.17■■■□□ 2.1
BRF1-216ENST00000550208 MVPQ14764 893 aaKnown RBP28.17■■■□□ 2.1
BRF1-216ENST00000550208 WASHC4Q2M389 1173 aa28.17■■■□□ 2.1
BRF1-216ENST00000550208 HELBQ8NG08 1087 aaPredicted RBP28.17■■■□□ 2.1
BRF1-216ENST00000550208 ANKRD2Q9GZV1 360 aa28.17■■■□□ 2.1
BRF1-216ENST00000550208 DUOX1Q9NRD9 1551 aa28.16■■■□□ 2.1
BRF1-216ENST00000550208 KIAA2012Q0VF49 1180 aa28.16■■■□□ 2.1
BRF1-216ENST00000550208 ZNF784Q8NCA9 323 aaPredicted RBP28.16■■■□□ 2.1
BRF1-216ENST00000550208 ZNF526Q8TF50 670 aaPredicted RBP28.16■■■□□ 2.1
BRF1-216ENST00000550208 JDP2Q8WYK2 163 aa28.16■■■□□ 2.1
BRF1-216ENST00000550208 TAF5LO75529 589 aa28.15■■■□□ 2.1
BRF1-216ENST00000550208 LRRC24Q50LG9 513 aa28.15■■■□□ 2.1
BRF1-216ENST00000550208 EYA3Q99504 573 aa28.15■■■□□ 2.1
BRF1-216ENST00000550208 C1orf115Q9H7X2 142 aa28.15■■■□□ 2.1
BRF1-216ENST00000550208 RIPOR2Q9Y4F9 1068 aa28.15■■■□□ 2.1
BRF1-216ENST00000550208 COL4A5P29400 1685 aa28.15■■■□□ 2.1
BRF1-216ENST00000550208 ZC3H4Q9UPT8 1303 aaKnown RBP28.15■■■□□ 2.1
BRF1-216ENST00000550208 PTPN12Q05209 780 aaKnown RBP28.14■■■□□ 2.1
BRF1-216ENST00000550208 LTBP1Q14766 1721 aa28.14■■■□□ 2.1
BRF1-216ENST00000550208 FZD9O00144 591 aa28.13■■■□□ 2.09
BRF1-216ENST00000550208 RRP1P56182 461 aaKnown RBP28.13■■■□□ 2.09
BRF1-216ENST00000550208 NIM1KQ8IY84 436 aa28.13■■■□□ 2.09
BRF1-216ENST00000550208 ZC3H12CQ9C0D7 883 aaKnown RBP28.13■■■□□ 2.09
BRF1-216ENST00000550208 LEMD3Q9Y2U8 911 aa28.13■■■□□ 2.09
BRF1-216ENST00000550208 SNAP23O00161 211 aa28.12■■■□□ 2.09
BRF1-216ENST00000550208 SRGAP3O43295 1099 aa28.12■■■□□ 2.09
BRF1-216ENST00000550208 MTX1Q13505 466 aa28.12■■■□□ 2.09
BRF1-216ENST00000550208 DDX19BQ9UMR2 479 aa28.12■■■□□ 2.09
BRF1-216ENST00000550208 GLTPD2A6NH11 291 aa28.11■■■□□ 2.09
BRF1-216ENST00000550208 PA2G4Q9UQ80 394 aaKnown RBP28.11■■■□□ 2.09
BRF1-216ENST00000550208 DOK7Q18PE1 504 aa28.1■■■□□ 2.09
BRF1-216ENST00000550208 ZNF804BA4D1E1 1349 aa28.1■■■□□ 2.09
BRF1-216ENST00000550208 TIAM2Q8IVF5 1701 aa28.09■■■□□ 2.09
BRF1-216ENST00000550208 PNMA6EA0A0J9YXQ4 647 aa28.09■■■□□ 2.09
BRF1-216ENST00000550208 EYA2O00167 538 aa28.09■■■□□ 2.09
BRF1-216ENST00000550208 ATP8B2P98198 1209 aa28.09■■■□□ 2.09
BRF1-216ENST00000550208 DPY19L2Q6NUT2 758 aa28.09■■■□□ 2.09
BRF1-216ENST00000550208 SIL1Q9H173 461 aa28.09■■■□□ 2.09
BRF1-216ENST00000550208 ZNRF3Q9ULT6 936 aa28.09■■■□□ 2.09
BRF1-216ENST00000550208 ZNF541Q9H0D2 1346 aa28.09■■■□□ 2.09
BRF1-216ENST00000550208 DDNO94850 711 aaPredicted RBP28.08■■■□□ 2.09
BRF1-216ENST00000550208 KCNJ4P48050 445 aa28.08■■■□□ 2.09
BRF1-216ENST00000550208 DBNDD1Q9H9R9 158 aa28.08■■■□□ 2.09
BRF1-216ENST00000550208 COPRSQ9NQ92 184 aa28.08■■■□□ 2.09
BRF1-216ENST00000550208 EIF6P56537 245 aaKnown RBP28.07■■■□□ 2.08
BRF1-216ENST00000550208 METTL24Q5JXM2 366 aa28.07■■■□□ 2.08
BRF1-216ENST00000550208 ATG9AQ7Z3C6 839 aa28.07■■■□□ 2.08
BRF1-216ENST00000550208 TXNRD3Q86VQ6 643 aa28.07■■■□□ 2.08
BRF1-216ENST00000550208 ZBTB40Q9NUA8 1239 aa28.07■■■□□ 2.08
BRF1-216ENST00000550208 MROH5Q6ZUA9 1318 aa28.07■■■□□ 2.08
BRF1-216ENST00000550208 YDJCA8MPS7 323 aa28.06■■■□□ 2.08
BRF1-216ENST00000550208 KLRK1P26718 216 aa28.06■■■□□ 2.08
BRF1-216ENST00000550208 GPBP1L1Q9HC44 474 aaPredicted RBP28.06■■■□□ 2.08
BRF1-216ENST00000550208 G3V3G9 751 aa28.05■■■□□ 2.08
BRF1-216ENST00000550208 CXCL9Q07325 125 aa28.05■■■□□ 2.08
BRF1-216ENST00000550208 DCAF8Q5TAQ9 597 aa28.05■■■□□ 2.08
BRF1-216ENST00000550208 KDM2BQ8NHM5 1336 aa28.05■■■□□ 2.08
BRF1-216ENST00000550208 ECE2O60344 883 aa28.04■■■□□ 2.08
BRF1-216ENST00000550208 CHMP4BQ9H444 224 aaKnown RBP28.04■■■□□ 2.08
BRF1-216ENST00000550208 NMRK2Q9NPI5 230 aa28.04■■■□□ 2.08
BRF1-216ENST00000550208 KCNQ5Q9NR82 932 aa28.04■■■□□ 2.08
BRF1-216ENST00000550208 FBXO3Q9UK99 471 aa28.04■■■□□ 2.08
BRF1-216ENST00000550208 MED23Q9ULK4 1368 aa28.03■■■□□ 2.08
BRF1-216ENST00000550208 RAD17O75943 681 aa28.03■■■□□ 2.08
BRF1-216ENST00000550208 CIAO1O76071 339 aa28.03■■■□□ 2.08
BRF1-216ENST00000550208 POLA2Q14181 598 aa28.03■■■□□ 2.08
BRF1-216ENST00000550208 CEP85Q6P2H3 762 aa28.03■■■□□ 2.08
BRF1-216ENST00000550208 SSH3Q8TE77 659 aa28.03■■■□□ 2.08
BRF1-216ENST00000550208 RRAGCQ9HB90 399 aa28.03■■■□□ 2.08
BRF1-216ENST00000550208 GJA3Q9Y6H8 435 aa28.03■■■□□ 2.08
BRF1-216ENST00000550208 PDE8BO95263 885 aa28.02■■■□□ 2.08
BRF1-216ENST00000550208 UBE4AQ14139 1066 aa28.02■■■□□ 2.08
BRF1-216ENST00000550208 VGLL2Q8N8G2 317 aa28.02■■■□□ 2.08
BRF1-216ENST00000550208 IRS2Q9Y4H2 1338 aa28.01■■■□□ 2.07
BRF1-216ENST00000550208 IL15P40933 162 aaPredicted RBP28.01■■■□□ 2.07
BRF1-216ENST00000550208 C15orf52Q6ZUT6 534 aaKnown RBP28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms