RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 C2CD5Q86YS7 1000 aa19.74■□□□□ 0.75
PRPF40A-212ENST00000545856 CLASRPQ8N2M8 674 aaKnown RBP19.74■□□□□ 0.75
PRPF40A-212ENST00000545856 CCDC85AQ96PX6 553 aaPredicted RBP19.74■□□□□ 0.75
PRPF40A-212ENST00000545856 SEC31BQ9NQW1 1179 aa19.74■□□□□ 0.75
PRPF40A-212ENST00000545856 CEP126Q9P2H0 1117 aa19.74■□□□□ 0.75
PRPF40A-212ENST00000545856 ANKRD45Q5TZF3 282 aa19.73■□□□□ 0.75
PRPF40A-212ENST00000545856 CCDC24Q8N4L8 307 aa19.73■□□□□ 0.75
PRPF40A-212ENST00000545856 KLHDC4Q8TBB5 520 aa19.72■□□□□ 0.75
PRPF40A-212ENST00000545856 CELF1Q92879 486 aaKnown RBP19.72■□□□□ 0.75
PRPF40A-212ENST00000545856 SIL1Q9H173 461 aa19.72■□□□□ 0.75
PRPF40A-212ENST00000545856 TMX4Q9H1E5 349 aaPredicted RBP19.72■□□□□ 0.75
PRPF40A-212ENST00000545856 LTBP1Q14766 1721 aa19.72■□□□□ 0.75
PRPF40A-212ENST00000545856 SASH1O94885 1247 aa19.71■□□□□ 0.75
PRPF40A-212ENST00000545856 ZNF594Q96JF6 807 aaPredicted RBP19.71■□□□□ 0.75
PRPF40A-212ENST00000545856 ARFGEF1Q9Y6D6 1849 aa19.71■□□□□ 0.75
PRPF40A-212ENST00000545856 ZNF609O15014 1411 aa19.71■□□□□ 0.75
PRPF40A-212ENST00000545856 PDE8BO95263 885 aa19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 METTL24Q5JXM2 366 aa19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 SP8Q8IXZ3 490 aa19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 VGLL2Q8N8G2 317 aa19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 PPEF1O14829 653 aaPredicted RBP19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 ZBTB22O15209 634 aa19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 PUM3Q15397 648 aaKnown RBP19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 LRRC24Q50LG9 513 aa19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 SOGA3Q5TF21 947 aa19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 ATP6V0A2Q9Y487 856 aa19.7■□□□□ 0.74
PRPF40A-212ENST00000545856 XDHP47989 1333 aa19.69■□□□□ 0.74
PRPF40A-212ENST00000545856 AOX1Q06278 1338 aa19.69■□□□□ 0.74
PRPF40A-212ENST00000545856 SLX4Q8IY92 1834 aa19.69■□□□□ 0.74
PRPF40A-212ENST00000545856 UBE4AQ14139 1066 aa19.69■□□□□ 0.74
PRPF40A-212ENST00000545856 GPATCH3Q96I76 525 aa19.69■□□□□ 0.74
PRPF40A-212ENST00000545856 PUS3Q9BZE2 481 aaKnown RBP19.69■□□□□ 0.74
PRPF40A-212ENST00000545856 PODXL2Q9NZ53 605 aa19.69■□□□□ 0.74
PRPF40A-212ENST00000545856 MINPP1Q9UNW1 487 aa19.69■□□□□ 0.74
PRPF40A-212ENST00000545856 COL4A1P02462 1669 aa19.69■□□□□ 0.74
PRPF40A-212ENST00000545856 CHRNDQ07001 517 aa19.68■□□□□ 0.74
PRPF40A-212ENST00000545856 TNNI3KQ59H18 835 aa19.68■□□□□ 0.74
PRPF40A-212ENST00000545856 TTLL6Q8N841 843 aa19.68■□□□□ 0.74
PRPF40A-212ENST00000545856 LPIN2Q92539 896 aa19.68■□□□□ 0.74
PRPF40A-212ENST00000545856 LEMD3Q9Y2U8 911 aa19.68■□□□□ 0.74
PRPF40A-212ENST00000545856 FPGT-TNNI3KV9GXZ4 949 aa19.68■□□□□ 0.74
PRPF40A-212ENST00000545856 TTC41PQ6P2S7 1318 aa19.67■□□□□ 0.74
PRPF40A-212ENST00000545856 TFCP2Q12800 502 aa19.67■□□□□ 0.74
PRPF40A-212ENST00000545856 ZNF622Q969S3 477 aaKnown RBP eCLIP19.67■□□□□ 0.742e-9■■□□□ 11.4
PRPF40A-212ENST00000545856 OSBPL3Q9H4L5 887 aa19.67■□□□□ 0.74
PRPF40A-212ENST00000545856 PIM2Q9P1W9 311 aa19.67■□□□□ 0.74
PRPF40A-212ENST00000545856 IFIT2P09913 472 aaKnown RBP19.66■□□□□ 0.74
PRPF40A-212ENST00000545856 PRPF40BQ6NWY9 871 aaKnown RBP19.66■□□□□ 0.74
PRPF40A-212ENST00000545856 LNPKQ9C0E8 428 aa19.66■□□□□ 0.74
PRPF40A-212ENST00000545856 IFIT1P09914 478 aaKnown RBP19.65■□□□□ 0.74
PRPF40A-212ENST00000545856 SLC5A1P13866 664 aa19.65■□□□□ 0.74
PRPF40A-212ENST00000545856 FGFR2P21802 821 aa19.65■□□□□ 0.74
PRPF40A-212ENST00000545856 ATP2B3Q16720 1220 aa19.65■□□□□ 0.74
PRPF40A-212ENST00000545856 C15orf52Q6ZUT6 534 aaKnown RBP19.65■□□□□ 0.74
PRPF40A-212ENST00000545856 STAP2Q9UGK3 403 aa19.65■□□□□ 0.74
PRPF40A-212ENST00000545856 SALL3Q9BXA9 1300 aa19.65■□□□□ 0.74
PRPF40A-212ENST00000545856 A0A1B0GUL7 405 aa19.64■□□□□ 0.73
PRPF40A-212ENST00000545856 APBB1O00213 710 aa19.64■□□□□ 0.73
PRPF40A-212ENST00000545856 DPEP1P16444 411 aa19.64■□□□□ 0.73
PRPF40A-212ENST00000545856 ATP2B4P23634 1241 aa19.64■□□□□ 0.73
PRPF40A-212ENST00000545856 CHRNA5P30532 468 aa19.64■□□□□ 0.73
PRPF40A-212ENST00000545856 AACSQ86V21 672 aa19.64■□□□□ 0.73
PRPF40A-212ENST00000545856 IL1RAPL2Q9NP60 686 aa19.64■□□□□ 0.73
PRPF40A-212ENST00000545856 MYH13Q9UKX3 1938 aa19.63■□□□□ 0.73
PRPF40A-212ENST00000545856 ERC2O15083 957 aa19.63■□□□□ 0.73
PRPF40A-212ENST00000545856 MX1P20591 662 aa19.63■□□□□ 0.73
PRPF40A-212ENST00000545856 KCNA3P22001 575 aa19.63■□□□□ 0.73
PRPF40A-212ENST00000545856 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.63■□□□□ 0.73
PRPF40A-212ENST00000545856 EAF2Q96CJ1 260 aaPredicted RBP19.63■□□□□ 0.73
PRPF40A-212ENST00000545856 ZNF512BQ96KM6 892 aaPredicted RBP19.63■□□□□ 0.73
PRPF40A-212ENST00000545856 C7orf43Q8WVR3 580 aa19.62■□□□□ 0.73
PRPF40A-212ENST00000545856 FER1L6Q2WGJ9 1857 aa19.62■□□□□ 0.73
PRPF40A-212ENST00000545856 DUOX1Q9NRD9 1551 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 SNED1Q8TER0 1413 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 MED23Q9ULK4 1368 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 ZNF804BA4D1E1 1349 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 SMARCA5O60264 1052 aaPredicted RBP19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 KCNJ4P48050 445 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 DALRD3Q5D0E6 543 aaKnown RBP19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 TICAM2Q86XR7 235 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 RTKN2Q8IZC4 609 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 SUPT20HQ8NEM7 779 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 VPS33BQ9H267 617 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 ECHDC1Q9NTX5 307 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 ANKIB1Q9P2G1 1089 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 PPP1R1BQ9UD71 204 aaPredicted RBP19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 GGA1Q9UJY5 639 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 AK9Q5TCS8 1911 aa19.61■□□□□ 0.73
PRPF40A-212ENST00000545856 CCDC93Q567U6 631 aa19.6■□□□□ 0.73
PRPF40A-212ENST00000545856 CCDC158Q5M9N0 1113 aa19.6■□□□□ 0.73
PRPF40A-212ENST00000545856 RTFDC1Q9BY42 306 aaPredicted RBP19.6■□□□□ 0.73
PRPF40A-212ENST00000545856 DBNLQ9UJU6 430 aaKnown RBP19.6■□□□□ 0.73
PRPF40A-212ENST00000545856 A0A0G2JLW4 131 aa19.59■□□□□ 0.73
PRPF40A-212ENST00000545856 IGSF3O75054 1194 aa19.59■□□□□ 0.73
PRPF40A-212ENST00000545856 GLRX3O76003 335 aaKnown RBP19.59■□□□□ 0.73
PRPF40A-212ENST00000545856 PDE1AP54750 535 aa19.59■□□□□ 0.73
PRPF40A-212ENST00000545856 PLEKHM2Q8IWE5 1019 aa19.59■□□□□ 0.73
PRPF40A-212ENST00000545856 MPNDQ8N594 471 aa19.59■□□□□ 0.73
PRPF40A-212ENST00000545856 EYA3Q99504 573 aa19.59■□□□□ 0.73
PRPF40A-212ENST00000545856 SEMA3EO15041 775 aa19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms