RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 MOB2Q70IA6 237 aa12.4□□□□□ -0.42
CHD4-212ENST00000545083 NECTIN2Q92692 538 aa12.4□□□□□ -0.42
CHD4-212ENST00000545083 TSPYL4Q9UJ04 414 aa12.4□□□□□ -0.42
CHD4-212ENST00000545083 HDAC9Q9UKV0 1011 aa12.4□□□□□ -0.42
CHD4-212ENST00000545083 VIL1P09327 827 aaKnown RBP12.39□□□□□ -0.43
CHD4-212ENST00000545083 PKN2Q16513 984 aaKnown RBP12.39□□□□□ -0.43
CHD4-212ENST00000545083 REM2Q8IYK8 340 aaPredicted RBP12.39□□□□□ -0.43
CHD4-212ENST00000545083 TBC1D16Q8TBP0 767 aa12.39□□□□□ -0.43
CHD4-212ENST00000545083 SCAF8Q9UPN6 1271 aaKnown RBP12.39□□□□□ -0.43
CHD4-212ENST00000545083 MKI67P46013 3256 aaKnown RBP12.39□□□□□ -0.43
CHD4-212ENST00000545083 DDX60Q8IY21 1712 aaKnown RBP12.38□□□□□ -0.43
CHD4-212ENST00000545083 UBE2Q2LH0YL09 131 aa12.38□□□□□ -0.43
CHD4-212ENST00000545083 ZNF280AP59817 542 aaPredicted RBP12.38□□□□□ -0.43
CHD4-212ENST00000545083 SCARF1Q14162 830 aa12.38□□□□□ -0.43
CHD4-212ENST00000545083 SF3B3Q15393 1217 aaKnown RBP12.38□□□□□ -0.43
CHD4-212ENST00000545083 HTTP42858 3142 aa12.37□□□□□ -0.43
CHD4-212ENST00000545083 GPR25O00155 361 aa12.37□□□□□ -0.43
CHD4-212ENST00000545083 FKBP1BP68106 108 aa12.37□□□□□ -0.43
CHD4-212ENST00000545083 HABP4Q5JVS0 413 aaKnown RBP12.37□□□□□ -0.43
CHD4-212ENST00000545083 PRAMEF18Q5VWM3 479 aa12.37□□□□□ -0.43
CHD4-212ENST00000545083 FBXO46Q6PJ61 603 aaPredicted RBP12.37□□□□□ -0.43
CHD4-212ENST00000545083 CCER1Q8TC90 406 aaPredicted RBP12.37□□□□□ -0.43
CHD4-212ENST00000545083 FAM89AQ96GI7 184 aa12.37□□□□□ -0.43
CHD4-212ENST00000545083 EYA3Q99504 573 aa12.37□□□□□ -0.43
CHD4-212ENST00000545083 R3HDMLQ9H3Y0 253 aa12.37□□□□□ -0.43
CHD4-212ENST00000545083 PAPPA2Q9BXP8 1791 aa12.37□□□□□ -0.43
CHD4-212ENST00000545083 NEFMP07197 916 aa12.36□□□□□ -0.43
CHD4-212ENST00000545083 ATP5J2-PTCD1G3V325 749 aa12.35□□□□□ -0.43
CHD4-212ENST00000545083 TM4SF4P48230 202 aa12.35□□□□□ -0.43
CHD4-212ENST00000545083 MKRN3Q13064 507 aaKnown RBP12.35□□□□□ -0.43
CHD4-212ENST00000545083 KRT24Q2M2I5 525 aa12.35□□□□□ -0.43
CHD4-212ENST00000545083 RTL5Q5HYW3 569 aaPredicted RBP12.35□□□□□ -0.43
CHD4-212ENST00000545083 RSBN1LQ6PCB5 846 aaPredicted RBP12.35□□□□□ -0.43
CHD4-212ENST00000545083 GCC1Q96CN9 775 aa12.35□□□□□ -0.43
CHD4-212ENST00000545083 GMLQ99445 158 aa12.35□□□□□ -0.43
CHD4-212ENST00000545083 ISCA1Q9BUE6 129 aa12.35□□□□□ -0.43
CHD4-212ENST00000545083 ZC3H12CQ9C0D7 883 aaKnown RBP12.35□□□□□ -0.43
CHD4-212ENST00000545083 SEC31BQ9NQW1 1179 aa12.35□□□□□ -0.43
CHD4-212ENST00000545083 ZNF609O15014 1411 aa12.35□□□□□ -0.43
CHD4-212ENST00000545083 UFL1O94874 794 aa12.34□□□□□ -0.43
CHD4-212ENST00000545083 RPS8P62241 208 aaKnown RBP12.34□□□□□ -0.43
CHD4-212ENST00000545083 NOM1Q5C9Z4 860 aaKnown RBP12.34□□□□□ -0.43
CHD4-212ENST00000545083 AGBL3Q8NEM8 1001 aa12.34□□□□□ -0.43
CHD4-212ENST00000545083 MYOZ2Q9NPC6 264 aa12.34□□□□□ -0.43
CHD4-212ENST00000545083 PODXL2Q9NZ53 605 aa12.34□□□□□ -0.43
CHD4-212ENST00000545083 PITPNM2Q9BZ72 1349 aa12.34□□□□□ -0.43
CHD4-212ENST00000545083 POTEFA5A3E0 1075 aa12.33□□□□□ -0.44
CHD4-212ENST00000545083 CHPF2Q9P2E5 772 aa12.33□□□□□ -0.44
CHD4-212ENST00000545083 IRS4O14654 1257 aaPredicted RBP12.32□□□□□ -0.44
CHD4-212ENST00000545083 FKTNO75072 461 aa12.32□□□□□ -0.44
CHD4-212ENST00000545083 USP17L8P0C7I0 530 aa12.32□□□□□ -0.44
CHD4-212ENST00000545083 NBPF9Q3BBW0 867 aa12.32□□□□□ -0.44
CHD4-212ENST00000545083 PLBD2Q8NHP8 589 aa12.32□□□□□ -0.44
CHD4-212ENST00000545083 CFHR5Q9BXR6 569 aa12.32□□□□□ -0.44
CHD4-212ENST00000545083 GGA1Q9UJY5 639 aa12.32□□□□□ -0.44
CHD4-212ENST00000545083 MAPK8IP3Q9UPT6 1336 aa12.32□□□□□ -0.44
CHD4-212ENST00000545083 WTIPA6NIX2 430 aaPredicted RBP12.31□□□□□ -0.44
CHD4-212ENST00000545083 G3V3G9 751 aa12.31□□□□□ -0.44
CHD4-212ENST00000545083 TTLL12Q14166 644 aaPredicted RBP12.31□□□□□ -0.44
CHD4-212ENST00000545083 DCAF8Q5TAQ9 597 aa12.31□□□□□ -0.44
CHD4-212ENST00000545083 ANKRD13DQ6ZTN6 518 aa12.31□□□□□ -0.44
CHD4-212ENST00000545083 BABAM1Q9NWV8 329 aa12.31□□□□□ -0.44
CHD4-212ENST00000545083 ANKIB1Q9P2G1 1089 aa12.31□□□□□ -0.44
CHD4-212ENST00000545083 BRCA2P51587 3418 aa12.3□□□□□ -0.44
CHD4-212ENST00000545083 CENPFP49454 3210 aa12.3□□□□□ -0.44
CHD4-212ENST00000545083 KIAA0100Q14667 2235 aaKnown RBP12.3□□□□□ -0.44
CHD4-212ENST00000545083 FXR1P51114 621 aaKnown RBP eCLIP12.3□□□□□ -0.442e-6■■■□□ 15.4
CHD4-212ENST00000545083 RIPK4P57078 832 aa12.3□□□□□ -0.44
CHD4-212ENST00000545083 PTPN12Q05209 780 aaKnown RBP12.3□□□□□ -0.44
CHD4-212ENST00000545083 MXD3Q9BW11 206 aa12.3□□□□□ -0.44
CHD4-212ENST00000545083 USP17L3A6NCW0 530 aa12.29□□□□□ -0.44
CHD4-212ENST00000545083 USP17L4A6NCW7 530 aa12.29□□□□□ -0.44
CHD4-212ENST00000545083 SREBF2Q12772 1141 aa12.29□□□□□ -0.44
CHD4-212ENST00000545083 TRIM28Q13263 835 aaKnown RBP12.29□□□□□ -0.44
CHD4-212ENST00000545083 PRKG1Q13976 671 aa12.29□□□□□ -0.44
CHD4-212ENST00000545083 USP17L1Q7RTZ2 530 aa12.29□□□□□ -0.44
CHD4-212ENST00000545083 TRIM17Q9Y577 477 aa12.29□□□□□ -0.44
CHD4-212ENST00000545083 PSME4Q14997 1843 aa12.29□□□□□ -0.44
CHD4-212ENST00000545083 CHL1O00533 1208 aa12.28□□□□□ -0.44
CHD4-212ENST00000545083 WNT10BO00744 389 aa12.28□□□□□ -0.44
CHD4-212ENST00000545083 SPRYD7Q5W111 196 aa12.28□□□□□ -0.44
CHD4-212ENST00000545083 OTOP1Q7RTM1 612 aa12.28□□□□□ -0.44
CHD4-212ENST00000545083 CCDC85AQ96PX6 553 aaPredicted RBP12.28□□□□□ -0.44
CHD4-212ENST00000545083 FZD1Q9UP38 647 aa12.28□□□□□ -0.44
CHD4-212ENST00000545083 SASH1O94885 1247 aa12.27□□□□□ -0.45
CHD4-212ENST00000545083 TMPOP42166 694 aaKnown RBP12.27□□□□□ -0.45
CHD4-212ENST00000545083 DACT2Q5SW24 774 aa12.27□□□□□ -0.45
CHD4-212ENST00000545083 LDLRAD1Q5T700 205 aa12.27□□□□□ -0.45
CHD4-212ENST00000545083 HDGFL1Q5TGJ6 251 aa12.27□□□□□ -0.45
CHD4-212ENST00000545083 PODNQ7Z5L7 613 aa12.27□□□□□ -0.45
CHD4-212ENST00000545083 JARID2Q92833 1246 aaPredicted RBP12.27□□□□□ -0.45
CHD4-212ENST00000545083 XDHP47989 1333 aa12.27□□□□□ -0.45
CHD4-212ENST00000545083 CEP290O15078 2479 aa12.27□□□□□ -0.45
CHD4-212ENST00000545083 TRIOBPQ9H2D6 2365 aa12.26□□□□□ -0.45
CHD4-212ENST00000545083 EN2P19622 333 aaPredicted RBP12.26□□□□□ -0.45
CHD4-212ENST00000545083 NF2P35240 595 aa12.26□□□□□ -0.45
CHD4-212ENST00000545083 CAP1Q01518 475 aa12.26□□□□□ -0.45
CHD4-212ENST00000545083 ZBTB38Q8NAP3 1195 aaPredicted RBP12.26□□□□□ -0.45
CHD4-212ENST00000545083 PNNQ9H307 717 aaKnown RBP12.26□□□□□ -0.45
CHD4-212ENST00000545083 SZT2Q5T011 3432 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms