RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 DCPSQ96C86 337 aaKnown RBP16.81■□□□□ 0.28
USP28-212ENST00000544750 FAM89AQ96GI7 184 aa16.81■□□□□ 0.28
USP28-212ENST00000544750 CSRNP1Q96S65 589 aa16.81■□□□□ 0.28
USP28-212ENST00000544750 PAPPA2Q9BXP8 1791 aa16.8■□□□□ 0.28
USP28-212ENST00000544750 ASTN2O75129 1339 aaPredicted RBP16.8■□□□□ 0.28
USP28-212ENST00000544750 C6orf229H3BNL8 230 aa16.8■□□□□ 0.28
USP28-212ENST00000544750 DOK7Q18PE1 504 aa16.8■□□□□ 0.28
USP28-212ENST00000544750 KIF4BQ2VIQ3 1234 aa16.8■□□□□ 0.28
USP28-212ENST00000544750 RBM26Q5T8P6 1007 aaKnown RBP16.8■□□□□ 0.28
USP28-212ENST00000544750 TBC1D16Q8TBP0 767 aa16.8■□□□□ 0.28
USP28-212ENST00000544750 CHPF2Q9P2E5 772 aa16.8■□□□□ 0.28
USP28-212ENST00000544750 SOX10P56693 466 aa16.79■□□□□ 0.28
USP28-212ENST00000544750 TRIM28Q13263 835 aaKnown RBP16.79■□□□□ 0.28
USP28-212ENST00000544750 ANKRD13DQ6ZTN6 518 aa16.79■□□□□ 0.28
USP28-212ENST00000544750 EYA3Q99504 573 aa16.79■□□□□ 0.28
USP28-212ENST00000544750 GGA3Q9NZ52 723 aa16.79■□□□□ 0.28
USP28-212ENST00000544750 PODXL2Q9NZ53 605 aa16.79■□□□□ 0.28
USP28-212ENST00000544750 ATP5J2-PTCD1G3V325 749 aa16.78■□□□□ 0.28
USP28-212ENST00000544750 RPS8P62241 208 aaKnown RBP16.78■□□□□ 0.28
USP28-212ENST00000544750 LMOD3Q0VAK6 560 aa16.78■□□□□ 0.28
USP28-212ENST00000544750 CDCA5Q96FF9 252 aa16.78■□□□□ 0.28
USP28-212ENST00000544750 HOXB7P09629 217 aa16.77■□□□□ 0.28
USP28-212ENST00000544750 ZNF280AP59817 542 aaPredicted RBP16.77■□□□□ 0.28
USP28-212ENST00000544750 CTU1Q7Z7A3 348 aaKnown RBP16.77■□□□□ 0.28
USP28-212ENST00000544750 RASAL3Q86YV0 1011 aa16.77■□□□□ 0.28
USP28-212ENST00000544750 SULF1Q8IWU6 871 aa16.77■□□□□ 0.28
USP28-212ENST00000544750 GMLQ99445 158 aa16.76■□□□□ 0.27
USP28-212ENST00000544750 TRIM35Q9UPQ4 493 aa16.76■□□□□ 0.27
USP28-212ENST00000544750 IRS4O14654 1257 aaPredicted RBP16.75■□□□□ 0.27
USP28-212ENST00000544750 RTL5Q5HYW3 569 aaPredicted RBP16.75■□□□□ 0.27
USP28-212ENST00000544750 HDGFL1Q5TGJ6 251 aa16.75■□□□□ 0.27
USP28-212ENST00000544750 REM2Q8IYK8 340 aaPredicted RBP16.75■□□□□ 0.27
USP28-212ENST00000544750 AGBL3Q8NEM8 1001 aa16.75■□□□□ 0.27
USP28-212ENST00000544750 ZC3H12CQ9C0D7 883 aaKnown RBP16.75■□□□□ 0.27
USP28-212ENST00000544750 SEC31BQ9NQW1 1179 aa16.75■□□□□ 0.27
USP28-212ENST00000544750 DBF4Q9UBU7 674 aaPredicted RBP16.75■□□□□ 0.27
USP28-212ENST00000544750 MYH3P11055 1940 aa16.74■□□□□ 0.27
USP28-212ENST00000544750 FKBP1BP68106 108 aa16.74■□□□□ 0.27
USP28-212ENST00000544750 SCARF1Q14162 830 aa16.74■□□□□ 0.27
USP28-212ENST00000544750 ANGEL2Q5VTE6 544 aaKnown RBP16.74■□□□□ 0.27
USP28-212ENST00000544750 RSBN1LQ6PCB5 846 aaPredicted RBP16.74■□□□□ 0.27
USP28-212ENST00000544750 PITPNM2Q9BZ72 1349 aa16.73■□□□□ 0.27
USP28-212ENST00000544750 SPEF2Q9C093 1822 aa16.73■□□□□ 0.27
USP28-212ENST00000544750 UFL1O94874 794 aa16.72■□□□□ 0.27
USP28-212ENST00000544750 PRPF38BQ5VTL8 546 aaKnown RBP16.72■□□□□ 0.27
USP28-212ENST00000544750 ZBTB38Q8NAP3 1195 aaPredicted RBP16.72■□□□□ 0.27
USP28-212ENST00000544750 HYPKQ9NX55 129 aa16.72■□□□□ 0.27
USP28-212ENST00000544750 HPS5Q9UPZ3 1129 aa16.72■□□□□ 0.27
USP28-212ENST00000544750 NEUROD2Q15784 382 aa16.71■□□□□ 0.27
USP28-212ENST00000544750 GGA1Q9UJY5 639 aa16.71■□□□□ 0.27
USP28-212ENST00000544750 LAMB1P07942 1786 aa16.71■□□□□ 0.27
USP28-212ENST00000544750 MOB2Q70IA6 237 aa16.7■□□□□ 0.26
USP28-212ENST00000544750 MYOZ2Q9NPC6 264 aa16.7■□□□□ 0.26
USP28-212ENST00000544750 ANKIB1Q9P2G1 1089 aa16.7■□□□□ 0.26
USP28-212ENST00000544750 USP17L8P0C7I0 530 aa16.69■□□□□ 0.26
USP28-212ENST00000544750 RALBP1Q15311 655 aa16.69■□□□□ 0.26
USP28-212ENST00000544750 PKN2Q16513 984 aaKnown RBP16.69■□□□□ 0.26
USP28-212ENST00000544750 NOM1Q5C9Z4 860 aaKnown RBP16.69■□□□□ 0.26
USP28-212ENST00000544750 DUSP27Q5VZP5 1158 aa16.69■□□□□ 0.26
USP28-212ENST00000544750 CCDC146Q8IYE0 955 aa16.69■□□□□ 0.26
USP28-212ENST00000544750 ZNF296Q8WUU4 475 aaPredicted RBP16.69■□□□□ 0.26
USP28-212ENST00000544750 LAS1LQ9Y4W2 734 aaKnown RBP16.69■□□□□ 0.26
USP28-212ENST00000544750 PCCAP05165 728 aaPredicted RBP16.68■□□□□ 0.26
USP28-212ENST00000544750 TM4SF4P48230 202 aa16.68■□□□□ 0.26
USP28-212ENST00000544750 PODNQ7Z5L7 613 aa16.68■□□□□ 0.26
USP28-212ENST00000544750 SCAF8Q9UPN6 1271 aaKnown RBP16.68■□□□□ 0.26
USP28-212ENST00000544750 XDHP47989 1333 aa16.68■□□□□ 0.26
USP28-212ENST00000544750 USP17L3A6NCW0 530 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 USP17L4A6NCW7 530 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 G3V3G9 751 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 PDE8AO60658 829 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 TBC1D8O95759 1140 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 CCDC152Q4G0S7 254 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 DCAF8Q5TAQ9 597 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 USP17L1Q7RTZ2 530 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 RIC3Q7Z5B4 369 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 RUNDC1Q96C34 613 aa16.67■□□□□ 0.26
USP28-212ENST00000544750 PHAXQ9H814 394 aaKnown RBP16.67■□□□□ 0.26
USP28-212ENST00000544750 WTIPA6NIX2 430 aaPredicted RBP16.66■□□□□ 0.26
USP28-212ENST00000544750 UBE2Q2LH0YL09 131 aa16.66■□□□□ 0.26
USP28-212ENST00000544750 ZNF853P0CG23 659 aa16.66■□□□□ 0.26
USP28-212ENST00000544750 HSP90B1P14625 803 aaKnown RBP16.66■□□□□ 0.26
USP28-212ENST00000544750 NBPF9Q3BBW0 867 aa16.66■□□□□ 0.26
USP28-212ENST00000544750 PRAMEF18Q5VWM3 479 aa16.66■□□□□ 0.26
USP28-212ENST00000544750 CCDC191Q8NCU4 936 aa16.66■□□□□ 0.26
USP28-212ENST00000544750 CFHR5Q9BXR6 569 aa16.66■□□□□ 0.26
USP28-212ENST00000544750 MBIPQ9NS73 344 aa16.66■□□□□ 0.26
USP28-212ENST00000544750 ECM29Q5VYK3 1845 aa16.66■□□□□ 0.26
USP28-212ENST00000544750 HTTP42858 3142 aa16.65■□□□□ 0.26
USP28-212ENST00000544750 GPR25O00155 361 aa16.65■□□□□ 0.26
USP28-212ENST00000544750 ATP2B4P23634 1241 aa16.65■□□□□ 0.26
USP28-212ENST00000544750 MYD88Q99836 296 aa16.65■□□□□ 0.26
USP28-212ENST00000544750 MED23Q9ULK4 1368 aa16.64■□□□□ 0.26
USP28-212ENST00000544750 RBBP6Q7Z6E9 1792 aaKnown RBP16.64■□□□□ 0.25
USP28-212ENST00000544750 WNT10BO00744 389 aa16.64■□□□□ 0.25
USP28-212ENST00000544750 GOLGA2Q08379 1002 aa16.64■□□□□ 0.25
USP28-212ENST00000544750 DACT2Q5SW24 774 aa16.64■□□□□ 0.25
USP28-212ENST00000544750 ANKRD18AQ8IVF6 992 aa16.64■□□□□ 0.25
USP28-212ENST00000544750 JARID2Q92833 1246 aaPredicted RBP16.64■□□□□ 0.25
USP28-212ENST00000544750 CCDC85AQ96PX6 553 aaPredicted RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms