RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	GTF2E1	P29083	439 aa	Predicted RBP	11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	ECE1	P42892	770 aa		11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	CASP7	P55210	303 aa		11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	RABL6	Q3YEC7	729 aa	Predicted RBP	11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	HSP90AB4P	Q58FF6	505 aa		11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	MAP1S	Q66K74	1059 aa	Predicted RBP	11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	STYK1	Q6J9G0	422 aa		11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	PRR5L	Q6MZQ0	368 aa		11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	PRPF40B	Q6NWY9	871 aa	Known RBP	11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	SUCLG2	Q96I99	432 aa		11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	UBN2	Q6ZU65	1347 aa		11.81	□□□□□ -0.52
YBX3-215	ENST00000544504	IRS4	O14654	1257 aa	Predicted RBP	11.8	□□□□□ -0.52
YBX3-215	ENST00000544504	NPHP1	O15259	732 aa		11.8	□□□□□ -0.52
YBX3-215	ENST00000544504	PDE8A	O60658	829 aa		11.8	□□□□□ -0.52
YBX3-215	ENST00000544504	SUSD4	Q5VX71	490 aa		11.8	□□□□□ -0.52
YBX3-215	ENST00000544504	TBC1D9B	Q66K14	1250 aa		11.8	□□□□□ -0.52
YBX3-215	ENST00000544504	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.8	□□□□□ -0.52
YBX3-215	ENST00000544504	SSH3	Q8TE77	659 aa		11.8	□□□□□ -0.52
YBX3-215	ENST00000544504	CAPNS2	Q96L46	248 aa		11.8	□□□□□ -0.52
YBX3-215	ENST00000544504	BICC1	Q9H694	974 aa	Known RBP	11.8	□□□□□ -0.52
YBX3-215	ENST00000544504	SRGAP3	O43295	1099 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	NTSR2	O95665	410 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	SRGN	P10124	158 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	POLA2	Q14181	598 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	CCDC93	Q567U6	631 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	SMC5	Q8IY18	1101 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	CNBD1	Q8NA66	436 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	FAM89A	Q96GI7	184 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	MASTL	Q96GX5	879 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	GPR101	Q96P66	508 aa	Predicted RBP	11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	ZNF541	Q9H0D2	1346 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	ADAMTSL1	Q8N6G6	1762 aa		11.79	□□□□□ -0.52
YBX3-215	ENST00000544504	THSD7B	Q9C0I4	1608 aa		11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	CA12	O43570	354 aa		11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	RAB11FIP3	O75154	756 aa		11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	IGHD	P01880	384 aa		11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	ST5	P78524	1137 aa		11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	SLC10A5	Q5PT55	438 aa		11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	SIRT2	Q8IXJ6	389 aa		11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	CCDC24	Q8N4L8	307 aa		11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	DCTPP1	Q9H773	170 aa		11.78	□□□□□ -0.52
YBX3-215	ENST00000544504	COL11A2	P13942	1736 aa	Predicted RBP	11.77	□□□□□ -0.52
YBX3-215	ENST00000544504	ANKRD31	Q8N7Z5	1873 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	CSF1R	P07333	972 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	MAP2K2	P36507	400 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	CTSW	P56202	376 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	FOXO4	P98177	505 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	CCDC57	Q2TAC2	916 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	CCDC152	Q4G0S7	254 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	RTL5	Q5HYW3	569 aa	Predicted RBP	11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	LMBR1L	Q6UX01	489 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	ERC1	Q8IUD2	1116 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	GPC2	Q8N158	579 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	C7orf43	Q8WVR3	580 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	KAZALD1	Q96I82	304 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	MCOLN1	Q9GZU1	580 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	FBXO3	Q9UK99	471 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	RIC1	Q4ADV7	1423 aa		11.77	□□□□□ -0.53
YBX3-215	ENST00000544504	PNMA6E	A0A0J9YXQ4	647 aa		11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	FAM177B	A6PVY3	158 aa		11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	FZD9	O00144	591 aa		11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	GRM1	Q13255	1194 aa		11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	CYP4F22	Q6NT55	531 aa		11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	NLRP3	Q96P20	1036 aa		11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	NOP58	Q9Y2X3	529 aa	Known RBP	11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	CHMP3	Q9Y3E7	222 aa		11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	LAMB2	P55268	1798 aa		11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	RTL9	Q8NET4	1388 aa		11.76	□□□□□ -0.53
YBX3-215	ENST00000544504	SURF6	O75683	361 aa	Known RBP	11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	IFIT5	Q13325	482 aa	Known RBP	11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	OS9	Q13438	667 aa	Predicted RBP	11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	EPHA10	Q5JZY3	1008 aa		11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	RTKN2	Q8IZC4	609 aa		11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	TTLL11	Q8NHH1	800 aa		11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	JARID2	Q92833	1246 aa	Predicted RBP	11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	COPRS	Q9NQ92	184 aa		11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	TSKS	Q9UJT2	592 aa		11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	MYH3	P11055	1940 aa		11.75	□□□□□ -0.53
YBX3-215	ENST00000544504	ANKRD18B	A2A2Z9	1011 aa		11.74	□□□□□ -0.53
YBX3-215	ENST00000544504	NUCB1	Q02818	461 aa		11.74	□□□□□ -0.53
YBX3-215	ENST00000544504	SF3B3	Q15393	1217 aa	Known RBP	11.74	□□□□□ -0.53
YBX3-215	ENST00000544504	TAF7L	Q5H9L4	462 aa		11.74	□□□□□ -0.53
YBX3-215	ENST00000544504	KIF1BP	Q96EK5	621 aa		11.74	□□□□□ -0.53
YBX3-215	ENST00000544504	LRRCC1	Q9C099	1032 aa		11.74	□□□□□ -0.53
YBX3-215	ENST00000544504	SLX4	Q8IY92	1834 aa		11.74	□□□□□ -0.53
YBX3-215	ENST00000544504	CIAO1	O76071	339 aa		11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	HCLS1	P14317	486 aa	Predicted RBP	11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	NPR1	P16066	1061 aa		11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	IARS	P41252	1262 aa	Known RBP	11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	DGKZ	Q13574	1117 aa		11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	ANKRD45	Q5TZF3	282 aa		11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	CST9	Q5W186	159 aa		11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	CHD1L	Q86WJ1	897 aa		11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	NUTM1	Q86Y26	1132 aa		11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	CDC5L	Q99459	802 aa	Known RBP	11.73	□□□□□ -0.53

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