RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ANKRD30AQ9BXX3 1397 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 ARHGEF40Q8TER5 1519 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 VIMP08670 466 aaKnown RBP10.29□□□□□ -0.76
VPS13D-212ENST00000543766 WASHC5Q12768 1159 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 TMC6Q7Z403 805 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 PARP9Q8IXQ6 854 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 TEX13AQ9BXU3 409 aaPredicted RBP10.29□□□□□ -0.76
VPS13D-212ENST00000543766 C9orf84Q5VXU9 1444 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 MCCD1P59942 119 aaPredicted RBP10.29□□□□□ -0.76
VPS13D-212ENST00000543766 HDLBPQ00341 1268 aaKnown RBP10.29□□□□□ -0.76
VPS13D-212ENST00000543766 GRM1Q13255 1194 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 KBTBD12Q3ZCT8 623 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 CFAP58Q5T655 872 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 SEPT14Q6ZU15 432 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 NLRP13Q86W25 1043 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 CEP57L1Q8IYX8 460 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 TRMT2AQ8IZ69 625 aaKnown RBP10.29□□□□□ -0.76
VPS13D-212ENST00000543766 WHAMMQ8TF30 809 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 IFT122Q9HBG6 1241 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 EXOC1Q9NV70 894 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 CCDC141Q6ZP82 1450 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 FER1L4A9Z1Z3 1794 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 TCF3P15923 654 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 TRIM21P19474 475 aaKnown RBP10.28□□□□□ -0.76
VPS13D-212ENST00000543766 STIP1P31948 543 aaKnown RBP10.28□□□□□ -0.76
VPS13D-212ENST00000543766 CDC37Q16543 378 aaPredicted RBP10.28□□□□□ -0.76
VPS13D-212ENST00000543766 GABPB2Q8TAK5 448 aaPredicted RBP10.28□□□□□ -0.76
VPS13D-212ENST00000543766 PPCSQ9HAB8 311 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.28□□□□□ -0.76
VPS13D-212ENST00000543766 TPPPO94811 219 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 HSP90B2PQ58FF3 399 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 GBP6Q6ZN66 633 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 MCM10Q7L590 875 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 ALDH8A1Q9H2A2 487 aaPredicted RBP10.28□□□□□ -0.76
VPS13D-212ENST00000543766 TAOK3Q9H2K8 898 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 ARHGEF12Q9NZN5 1544 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 ZNF644Q9H582 1327 aaPredicted RBP10.28□□□□□ -0.76
VPS13D-212ENST00000543766 RRP12Q5JTH9 1297 aaKnown RBP10.28□□□□□ -0.76
VPS13D-212ENST00000543766 ZNF710Q8N1W2 664 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 RABEP2Q9H5N1 569 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 ZNHIT6Q9NWK9 470 aaKnown RBP10.28□□□□□ -0.76
VPS13D-212ENST00000543766 CFAP45Q9UL16 551 aa10.28□□□□□ -0.76
VPS13D-212ENST00000543766 SYNRGQ9UMZ2 1314 aa10.27□□□□□ -0.76
VPS13D-212ENST00000543766 RPS6KA3P51812 740 aa10.27□□□□□ -0.76
VPS13D-212ENST00000543766 CFDP1Q9UEE9 299 aaPredicted RBP10.27□□□□□ -0.76
VPS13D-212ENST00000543766 FBXL5Q9UKA1 691 aa10.27□□□□□ -0.76
VPS13D-212ENST00000543766 FAM69CQ0P6D2 419 aa10.27□□□□□ -0.77
VPS13D-212ENST00000543766 SAFB2Q14151 953 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS13D-212ENST00000543766 CLEC17AQ6ZS10 378 aa10.27□□□□□ -0.77
VPS13D-212ENST00000543766 BTN2A1Q7KYR7 527 aa10.27□□□□□ -0.77
VPS13D-212ENST00000543766 ZBTB10Q96DT7 871 aa10.27□□□□□ -0.77
VPS13D-212ENST00000543766 POM121Q96HA1 1249 aa10.27□□□□□ -0.77
VPS13D-212ENST00000543766 NAP1L4Q99733 375 aaKnown RBP10.27□□□□□ -0.77
VPS13D-212ENST00000543766 C6orf203Q9P0P8 240 aaPredicted RBP10.27□□□□□ -0.77
VPS13D-212ENST00000543766 EVLQ9UI08 416 aaPredicted RBP10.27□□□□□ -0.77
VPS13D-212ENST00000543766 COL17A1Q9UMD9 1497 aaPredicted RBP10.27□□□□□ -0.77
VPS13D-212ENST00000543766 CYP11B2P19099 503 aa10.27□□□□□ -0.77
VPS13D-212ENST00000543766 TUFMP49411 452 aaKnown RBP10.27□□□□□ -0.77
VPS13D-212ENST00000543766 ANKRD18AQ8IVF6 992 aa10.27□□□□□ -0.77
VPS13D-212ENST00000543766 ARMC2Q8NEN0 867 aa10.27□□□□□ -0.77
VPS13D-212ENST00000543766 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.27□□□□□ -0.77
VPS13D-212ENST00000543766 NASPP49321 788 aaPredicted RBP10.26□□□□□ -0.77
VPS13D-212ENST00000543766 C4orf46Q504U0 113 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 TEX35Q5T0J7 233 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 CAPS2Q9BXY5 557 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 MCM5P33992 734 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 NEK10Q6ZWH5 1172 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 KRT222Q8N1A0 295 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 MYRIPQ8NFW9 859 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 KIF18AQ8NI77 898 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 RSRC1Q96IZ7 334 aaKnown RBP10.26□□□□□ -0.77
VPS13D-212ENST00000543766 MAGI2Q86UL8 1455 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 WDR7Q9Y4E6 1490 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 LAMC1P11047 1609 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 IQGAP3Q86VI3 1631 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 FRMD3A2A2Y4 597 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 ZNF24P17028 368 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 BARGINQ6ZT62 677 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 NANOGNBQ7Z5D8 188 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 NUP133Q8WUM0 1156 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 PLEKHH1Q9ULM0 1364 aa10.26□□□□□ -0.77
VPS13D-212ENST00000543766 ANKRD50Q9ULJ7 1429 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 ERCC5P28715 1186 aaPredicted RBP10.25□□□□□ -0.77
VPS13D-212ENST00000543766 INHBEP58166 350 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 USP6NLQ92738 828 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 SCHIP1Q9P0W5 487 aaPredicted RBP10.25□□□□□ -0.77
VPS13D-212ENST00000543766 CHIC2Q9UKJ5 165 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 MPP3Q13368 585 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 TBK1Q9UHD2 729 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 SNUPNO95149 360 aaKnown RBP10.25□□□□□ -0.77
VPS13D-212ENST00000543766 SKOR2Q2VWA4 1001 aaPredicted RBP10.25□□□□□ -0.77
VPS13D-212ENST00000543766 NCAPG2Q86XI2 1143 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 TRIM4Q9C037 500 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 BCL2L12Q9HB09 334 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 PRELID1Q9Y255 219 aa10.25□□□□□ -0.77
VPS13D-212ENST00000543766 ZNF142P52746 1687 aaPredicted RBP10.25□□□□□ -0.77
VPS13D-212ENST00000543766 PER1O15534 1290 aaPredicted RBP10.24□□□□□ -0.77
VPS13D-212ENST00000543766 NF2P35240 595 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 TSNAXIP1Q2TAA8 658 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 ALDH1L2Q3SY69 923 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms