RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	FZD9	O00144	591 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	TOMM70	O94826	608 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	KCNJ4	P48050	445 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	CCT4	P50991	539 aa	Known RBP	13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	KIAA2012	Q0VF49	1180 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	EAPP	Q56P03	285 aa	Predicted RBP	13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	IFFO2	Q5TF58	517 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	HELB	Q8NG08	1087 aa	Predicted RBP	13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	BICC1	Q9H694	974 aa	Known RBP	13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	CNNM1	Q9NRU3	951 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	BSDC1	Q9NW68	430 aa	Predicted RBP	13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	ZNRF3	Q9ULT6	936 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	MINPP1	Q9UNW1	487 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	TNN	Q9UQP3	1299 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	CLEC11A	Q9Y240	323 aa		13.9	□□□□□ -0.18
DDB1-222	ENST00000543627	KIF16B	Q96L93	1317 aa		13.9	□□□□□ -0.19
DDB1-222	ENST00000543627	WTIP	A6NIX2	430 aa	Predicted RBP	13.89	□□□□□ -0.19
DDB1-222	ENST00000543627	ATP2B4	P23634	1241 aa		13.89	□□□□□ -0.19
DDB1-222	ENST00000543627	FBXW7	Q969H0	707 aa		13.89	□□□□□ -0.19
DDB1-222	ENST00000543627	USP44	Q9H0E7	712 aa		13.89	□□□□□ -0.19
DDB1-222	ENST00000543627	VPS33B	Q9H267	617 aa		13.89	□□□□□ -0.19
DDB1-222	ENST00000543627	DICER1	Q9UPY3	1922 aa	Known RBP	13.89	□□□□□ -0.19
DDB1-222	ENST00000543627	XDH	P47989	1333 aa		13.89	□□□□□ -0.19
DDB1-222	ENST00000543627	TAF5L	O75529	589 aa		13.88	□□□□□ -0.19
DDB1-222	ENST00000543627	UBTFL1	P0CB47	393 aa	Predicted RBP	13.88	□□□□□ -0.19
DDB1-222	ENST00000543627	LMOD1	P29536	600 aa	Predicted RBP	13.88	□□□□□ -0.19
DDB1-222	ENST00000543627	CXCL9	Q07325	125 aa		13.88	□□□□□ -0.19
DDB1-222	ENST00000543627	CIAPIN1	Q6FI81	312 aa		13.88	□□□□□ -0.19
DDB1-222	ENST00000543627	LDHAL6A	Q6ZMR3	332 aa		13.88	□□□□□ -0.19
DDB1-222	ENST00000543627	GPC2	Q8N158	579 aa		13.88	□□□□□ -0.19
DDB1-222	ENST00000543627	SNED1	Q8TER0	1413 aa		13.88	□□□□□ -0.19
DDB1-222	ENST00000543627	IQCA1L	A6NCM1	817 aa		13.87	□□□□□ -0.19
DDB1-222	ENST00000543627	POTEC	B2RU33	542 aa		13.87	□□□□□ -0.19
DDB1-222	ENST00000543627	ECE2	O60344	883 aa		13.87	□□□□□ -0.19
DDB1-222	ENST00000543627	CHRND	Q07001	517 aa		13.87	□□□□□ -0.19
DDB1-222	ENST00000543627	ZKSCAN2	Q63HK3	967 aa		13.87	□□□□□ -0.19
DDB1-222	ENST00000543627	ATF7IP	Q6VMQ6	1270 aa		13.87	□□□□□ -0.19
DDB1-222	ENST00000543627	ANKRD2	Q9GZV1	360 aa		13.87	□□□□□ -0.19
DDB1-222	ENST00000543627	HACL1	Q9UJ83	578 aa		13.87	□□□□□ -0.19
DDB1-222	ENST00000543627	MYH3	P11055	1940 aa		13.87	□□□□□ -0.19
DDB1-222	ENST00000543627	COL4A5	P29400	1685 aa		13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	SPEF2	Q9C093	1822 aa		13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	TRIM27	P14373	513 aa		13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	BRPF1	P55201	1214 aa	Predicted RBP	13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	TNIP1	Q15025	636 aa		13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	FTSJ3	Q8IY81	847 aa	Known RBP	13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	ARHGAP45	Q92619	1136 aa		13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	KAZALD1	Q96I82	304 aa		13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	KCNQ5	Q9NR82	932 aa		13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	PODXL2	Q9NZ53	605 aa		13.86	□□□□□ -0.19
DDB1-222	ENST00000543627	RTL9	Q8NET4	1388 aa		13.85	□□□□□ -0.19
DDB1-222	ENST00000543627	YDJC	A8MPS7	323 aa		13.85	□□□□□ -0.19
DDB1-222	ENST00000543627	SNAP23	O00161	211 aa		13.85	□□□□□ -0.19
DDB1-222	ENST00000543627	EPHX2	P34913	555 aa		13.85	□□□□□ -0.19
DDB1-222	ENST00000543627	KLHDC4	Q8TBB5	520 aa		13.85	□□□□□ -0.19
DDB1-222	ENST00000543627	PUS3	Q9BZE2	481 aa	Known RBP	13.85	□□□□□ -0.19
DDB1-222	ENST00000543627	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.85	□□□□□ -0.19
DDB1-222	ENST00000543627	UTY	O14607	1347 aa		13.85	□□□□□ -0.19
DDB1-222	ENST00000543627	POTEI	P0CG38	1075 aa		13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	POTEJ	P0CG39	1038 aa		13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	EPS15	P42566	896 aa		13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	GMPS	P49915	693 aa	Predicted RBP	13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	ANKRD44	Q8N8A2	993 aa		13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	SMC1B	Q8NDV3	1235 aa		13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	RBM46	Q8TBY0	533 aa	Known RBP	13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	MEIS3	Q99687	375 aa		13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	LEMD3	Q9Y2U8	911 aa		13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	LRRFIP2	Q9Y608	721 aa	Known RBP	13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	ZNF804B	A4D1E1	1349 aa		13.84	□□□□□ -0.19
DDB1-222	ENST00000543627	PSMD14	O00487	310 aa		13.83	□□□□□ -0.2
DDB1-222	ENST00000543627	RBM26	Q5T8P6	1007 aa	Known RBP	13.83	□□□□□ -0.2
DDB1-222	ENST00000543627	INTS3	Q68E01	1043 aa	Known RBP	13.83	□□□□□ -0.2
DDB1-222	ENST00000543627	TMEM57	Q8N5G2	664 aa		13.83	□□□□□ -0.2
DDB1-222	ENST00000543627	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.83	□□□□□ -0.2
DDB1-222	ENST00000543627	KLRK1	P26718	216 aa		13.82	□□□□□ -0.2
DDB1-222	ENST00000543627	LRRC24	Q50LG9	513 aa		13.82	□□□□□ -0.2
DDB1-222	ENST00000543627	METTL24	Q5JXM2	366 aa		13.82	□□□□□ -0.2
DDB1-222	ENST00000543627	TXNRD3	Q86VQ6	643 aa		13.82	□□□□□ -0.2
DDB1-222	ENST00000543627	ITPRIP	Q8IWB1	547 aa		13.82	□□□□□ -0.2
DDB1-222	ENST00000543627	SIL1	Q9H173	461 aa		13.82	□□□□□ -0.2
DDB1-222	ENST00000543627	HDAC5	Q9UQL6	1122 aa		13.82	□□□□□ -0.2
DDB1-222	ENST00000543627	DUOX1	Q9NRD9	1551 aa		13.82	□□□□□ -0.2
DDB1-222	ENST00000543627		H7C1D1	291 aa		13.81	□□□□□ -0.2
DDB1-222	ENST00000543627	GNAI3	P08754	354 aa		13.81	□□□□□ -0.2
DDB1-222	ENST00000543627	SCNN1D	P51172	638 aa		13.81	□□□□□ -0.2
DDB1-222	ENST00000543627	RABL6	Q3YEC7	729 aa	Predicted RBP	13.81	□□□□□ -0.2
DDB1-222	ENST00000543627	CHADL	Q6NUI6	762 aa		13.81	□□□□□ -0.2
DDB1-222	ENST00000543627	DZIP1L	Q8IYY4	767 aa	Known RBP	13.81	□□□□□ -0.2
DDB1-222	ENST00000543627	CNOT7	Q9UIV1	285 aa	Known RBP	13.81	□□□□□ -0.2
DDB1-222	ENST00000543627	LRRC37A	A6NMS7	1700 aa		13.81	□□□□□ -0.2
DDB1-222	ENST00000543627	WDR90	Q96KV7	1748 aa		13.81	□□□□□ -0.2
DDB1-222	ENST00000543627	SHTN1	A0MZ66	631 aa		13.8	□□□□□ -0.2
DDB1-222	ENST00000543627	HSPA6	P17066	643 aa		13.8	□□□□□ -0.2
DDB1-222	ENST00000543627	FSTL1	Q12841	308 aa		13.8	□□□□□ -0.2
DDB1-222	ENST00000543627	MAP1S	Q66K74	1059 aa	Predicted RBP	13.8	□□□□□ -0.2
DDB1-222	ENST00000543627	PNMA8A	Q86V59	439 aa	Predicted RBP	13.8	□□□□□ -0.2
DDB1-222	ENST00000543627	GPRC5D	Q9NZD1	345 aa		13.8	□□□□□ -0.2
DDB1-222	ENST00000543627	RCAN3	Q9UKA8	241 aa		13.8	□□□□□ -0.2
DDB1-222	ENST00000543627	USP17L3	A6NCW0	530 aa		13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms