RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 CDC5LQ99459 802 aaKnown RBP12.3□□□□□ -0.44
YBX3-212ENST00000542002 VPS33BQ9H267 617 aa12.3□□□□□ -0.44
YBX3-212ENST00000542002 BICC1Q9H694 974 aaKnown RBP12.3□□□□□ -0.44
YBX3-212ENST00000542002 ANKIB1Q9P2G1 1089 aa12.3□□□□□ -0.44
YBX3-212ENST00000542002 SNAP23O00161 211 aa12.29□□□□□ -0.44
YBX3-212ENST00000542002 VEGFAP15692 232 aaPredicted RBP12.29□□□□□ -0.44
YBX3-212ENST00000542002 CXCL9Q07325 125 aa12.29□□□□□ -0.44
YBX3-212ENST00000542002 DOK7Q18PE1 504 aa12.29□□□□□ -0.44
YBX3-212ENST00000542002 WASHC4Q2M389 1173 aa12.29□□□□□ -0.44
YBX3-212ENST00000542002 RABL6Q3YEC7 729 aaPredicted RBP12.29□□□□□ -0.44
YBX3-212ENST00000542002 FRAT1Q92837 279 aaPredicted RBP12.29□□□□□ -0.44
YBX3-212ENST00000542002 API5Q9BZZ5 524 aaKnown RBP12.29□□□□□ -0.44
YBX3-212ENST00000542002 ZNRF3Q9ULT6 936 aa12.29□□□□□ -0.44
YBX3-212ENST00000542002 CCDC88AQ3V6T2 1871 aa12.29□□□□□ -0.44
YBX3-212ENST00000542002 ANKRD18BA2A2Z9 1011 aa12.28□□□□□ -0.44
YBX3-212ENST00000542002 CCT4P50991 539 aaKnown RBP12.28□□□□□ -0.44
YBX3-212ENST00000542002 IFIT5Q13325 482 aaKnown RBP12.28□□□□□ -0.44
YBX3-212ENST00000542002 INTS3Q68E01 1043 aaKnown RBP12.28□□□□□ -0.44
YBX3-212ENST00000542002 NIM1KQ8IY84 436 aa12.28□□□□□ -0.44
YBX3-212ENST00000542002 L3MBTL3Q96JM7 780 aaPredicted RBP12.28□□□□□ -0.44
YBX3-212ENST00000542002 CHMP3Q9Y3E7 222 aa12.28□□□□□ -0.44
YBX3-212ENST00000542002 RAD17O75943 681 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 TOMM70O94826 608 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 UFL1O94874 794 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 POTEIP0CG38 1075 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 POTEJP0CG39 1038 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 IGHMBP2P38935 993 aaKnown RBP12.27□□□□□ -0.45
YBX3-212ENST00000542002 ATF7IPQ6VMQ6 1270 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 TXNRD3Q86VQ6 643 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 GPC2Q8N158 579 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 HELBQ8NG08 1087 aaPredicted RBP12.27□□□□□ -0.45
YBX3-212ENST00000542002 CLUAP1Q96AJ1 413 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 MEIS3Q99687 375 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 PUS3Q9BZE2 481 aaKnown RBP12.27□□□□□ -0.45
YBX3-212ENST00000542002 DBNDD1Q9H9R9 158 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 GGA1Q9UJY5 639 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 GJA3Q9Y6H8 435 aa12.27□□□□□ -0.45
YBX3-212ENST00000542002 U3KPZ7 1027 aaPredicted RBP12.27□□□□□ -0.45
YBX3-212ENST00000542002 LRRC37AA6NMS7 1700 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 TIAM2Q8IVF5 1701 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 IPO8O15397 1037 aaKnown RBP12.26□□□□□ -0.45
YBX3-212ENST00000542002 TAF5LO75529 589 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 KLRK1P26718 216 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 EIF6P56537 245 aaKnown RBP12.26□□□□□ -0.45
YBX3-212ENST00000542002 CHRNDQ07001 517 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 CCDC57Q2TAC2 916 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 POTEHQ6S545 545 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 KLHDC4Q8TBB5 520 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 MPHOSPH8Q99549 860 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 XDHP47989 1333 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 KIF16BQ96L93 1317 aa12.26□□□□□ -0.45
YBX3-212ENST00000542002 LTBP1Q14766 1721 aa12.25□□□□□ -0.45
YBX3-212ENST00000542002 DICER1Q9UPY3 1922 aaKnown RBP12.25□□□□□ -0.45
YBX3-212ENST00000542002 RLBP1P12271 317 aa12.25□□□□□ -0.45
YBX3-212ENST00000542002 ATP2B4P23634 1241 aa12.25□□□□□ -0.45
YBX3-212ENST00000542002 EPS15P42566 896 aa12.25□□□□□ -0.45
YBX3-212ENST00000542002 RFX5P48382 616 aaPredicted RBP12.25□□□□□ -0.45
YBX3-212ENST00000542002 SCNN1DP51172 638 aa12.25□□□□□ -0.45
YBX3-212ENST00000542002 LDHAL6AQ6ZMR3 332 aa12.25□□□□□ -0.45
YBX3-212ENST00000542002 TMEM57Q8N5G2 664 aa12.25□□□□□ -0.45
YBX3-212ENST00000542002 ZC3H12CQ9C0D7 883 aaKnown RBP12.25□□□□□ -0.45
YBX3-212ENST00000542002 TAF1DQ9H5J8 278 aaPredicted RBP12.25□□□□□ -0.45
YBX3-212ENST00000542002 RIPOR2Q9Y4F9 1068 aa12.25□□□□□ -0.45
YBX3-212ENST00000542002 SHTN1A0MZ66 631 aa12.24□□□□□ -0.45
YBX3-212ENST00000542002 PSMD14O00487 310 aa12.24□□□□□ -0.45
YBX3-212ENST00000542002 ECE2O60344 883 aa12.24□□□□□ -0.45
YBX3-212ENST00000542002 LRRC24Q50LG9 513 aa12.24□□□□□ -0.45
YBX3-212ENST00000542002 ZKSCAN2Q63HK3 967 aa12.24□□□□□ -0.45
YBX3-212ENST00000542002 RBM46Q8TBY0 533 aaKnown RBP12.24□□□□□ -0.45
YBX3-212ENST00000542002 WDR90Q96KV7 1748 aa12.24□□□□□ -0.45
YBX3-212ENST00000542002 EYA3Q99504 573 aa12.24□□□□□ -0.45
YBX3-212ENST00000542002 LEMD3Q9Y2U8 911 aa12.24□□□□□ -0.45
YBX3-212ENST00000542002 ZBTB12Q9Y330 459 aaPredicted RBP12.24□□□□□ -0.45
YBX3-212ENST00000542002 IRS2Q9Y4H2 1338 aa12.24□□□□□ -0.45
YBX3-212ENST00000542002 LRRFIP2Q9Y608 721 aaKnown RBP12.24□□□□□ -0.45
YBX3-212ENST00000542002 ZNF804BA4D1E1 1349 aa12.23□□□□□ -0.45
YBX3-212ENST00000542002 PLIN1O60240 522 aa12.23□□□□□ -0.45
YBX3-212ENST00000542002 UBTFL1P0CB47 393 aaPredicted RBP12.23□□□□□ -0.45
YBX3-212ENST00000542002 DSG3P32926 999 aa12.23□□□□□ -0.45
YBX3-212ENST00000542002 EPHX2P34913 555 aa12.23□□□□□ -0.45
YBX3-212ENST00000542002 GMPSP49915 693 aaPredicted RBP12.23□□□□□ -0.45
YBX3-212ENST00000542002 CIAPIN1Q6FI81 312 aa12.23□□□□□ -0.45
YBX3-212ENST00000542002 ANKRD2Q9GZV1 360 aa12.23□□□□□ -0.45
YBX3-212ENST00000542002 HACL1Q9UJ83 578 aa12.23□□□□□ -0.45
YBX3-212ENST00000542002 PTPN12Q05209 780 aaKnown RBP12.22□□□□□ -0.45
YBX3-212ENST00000542002 TAF7LQ5H9L4 462 aa12.22□□□□□ -0.45
YBX3-212ENST00000542002 C16orf71Q8IYS4 520 aaPredicted RBP12.22□□□□□ -0.45
YBX3-212ENST00000542002 CNNM1Q9NRU3 951 aa12.22□□□□□ -0.45
YBX3-212ENST00000542002 GPRC5DQ9NZD1 345 aa12.22□□□□□ -0.45
YBX3-212ENST00000542002 IQCA1LA6NCM1 817 aa12.21□□□□□ -0.45
YBX3-212ENST00000542002 VIL1P09327 827 aaKnown RBP12.21□□□□□ -0.45
YBX3-212ENST00000542002 HIRAP54198 1017 aaPredicted RBP12.21□□□□□ -0.45
YBX3-212ENST00000542002 TNIP1Q15025 636 aa12.21□□□□□ -0.45
YBX3-212ENST00000542002 PANK1Q8TE04 598 aa12.21□□□□□ -0.45
YBX3-212ENST00000542002 MXD3Q9BW11 206 aa12.21□□□□□ -0.45
YBX3-212ENST00000542002 MED23Q9ULK4 1368 aa12.2□□□□□ -0.46
YBX3-212ENST00000542002 MYH3P11055 1940 aa12.2□□□□□ -0.46
YBX3-212ENST00000542002 ZBTB7BO15156 539 aaPredicted RBP12.2□□□□□ -0.46
YBX3-212ENST00000542002 EGFRP00533 1210 aa12.2□□□□□ -0.46
YBX3-212ENST00000542002 EAPPQ56P03 285 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms