RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PRKRIP1Q9H875 184 aaPredicted RBP20.1■□□□□ 0.81
CLSTN3-213ENST00000541953 ZNF646O15015 1829 aaPredicted RBP20.09■□□□□ 0.81
CLSTN3-213ENST00000541953 PSME4Q14997 1843 aa20.09■□□□□ 0.81
CLSTN3-213ENST00000541953 SPEF2Q9C093 1822 aa20.09■□□□□ 0.81
CLSTN3-213ENST00000541953 H7C1D1 291 aa20.09■□□□□ 0.81
CLSTN3-213ENST00000541953 MAP2K2P36507 400 aa20.09■□□□□ 0.81
CLSTN3-213ENST00000541953 RPS8P62241 208 aaKnown RBP20.09■□□□□ 0.81
CLSTN3-213ENST00000541953 DPF2Q92785 391 aa20.09■□□□□ 0.81
CLSTN3-213ENST00000541953 WTIPA6NIX2 430 aaPredicted RBP20.08■□□□□ 0.81
CLSTN3-213ENST00000541953 RBM26Q5T8P6 1007 aaKnown RBP20.08■□□□□ 0.81
CLSTN3-213ENST00000541953 RIC3Q7Z5B4 369 aa20.08■□□□□ 0.81
CLSTN3-213ENST00000541953 ZBTB38Q8NAP3 1195 aaPredicted RBP20.08■□□□□ 0.81
CLSTN3-213ENST00000541953 HHIPL1Q96JK4 782 aa20.08■□□□□ 0.81
CLSTN3-213ENST00000541953 BEGAINQ9BUH8 593 aa20.07■□□□□ 0.8
CLSTN3-213ENST00000541953 IFT57Q9NWB7 429 aa20.07■□□□□ 0.8
CLSTN3-213ENST00000541953 UFL1O94874 794 aa20.06■□□□□ 0.8
CLSTN3-213ENST00000541953 BRPF1P55201 1214 aaPredicted RBP20.06■□□□□ 0.8
CLSTN3-213ENST00000541953 HUNKP57058 714 aa20.06■□□□□ 0.8
CLSTN3-213ENST00000541953 KRT26Q7Z3Y9 468 aa20.06■□□□□ 0.8
CLSTN3-213ENST00000541953 TSPYL6Q8N831 410 aa20.06■□□□□ 0.8
CLSTN3-213ENST00000541953 FAM155AB1AL88 458 aaPredicted RBP20.05■□□□□ 0.8
CLSTN3-213ENST00000541953 GOLGA2Q08379 1002 aa20.05■□□□□ 0.8
CLSTN3-213ENST00000541953 FAM161AQ3B820 660 aa20.05■□□□□ 0.8
CLSTN3-213ENST00000541953 PODXL2Q9NZ53 605 aa20.05■□□□□ 0.8
CLSTN3-213ENST00000541953 TNRC18O15417 2968 aaPredicted RBP20.04■□□□□ 0.8
CLSTN3-213ENST00000541953 PCCAP05165 728 aaPredicted RBP20.03■□□□□ 0.8
CLSTN3-213ENST00000541953 VIL1P09327 827 aaKnown RBP20.03■□□□□ 0.8
CLSTN3-213ENST00000541953 RPS12P25398 132 aaKnown RBP20.03■□□□□ 0.8
CLSTN3-213ENST00000541953 KIF4BQ2VIQ3 1234 aa20.03■□□□□ 0.8
CLSTN3-213ENST00000541953 CCDC184Q52MB2 194 aa20.03■□□□□ 0.8
CLSTN3-213ENST00000541953 EYA3Q99504 573 aa20.03■□□□□ 0.8
CLSTN3-213ENST00000541953 GGA3Q9NZ52 723 aa20.03■□□□□ 0.8
CLSTN3-213ENST00000541953 MYH3P11055 1940 aa20.02■□□□□ 0.8
CLSTN3-213ENST00000541953 CCDC85CA6NKD9 419 aa20.02■□□□□ 0.8
CLSTN3-213ENST00000541953 IGKV5-2P06315 115 aa20.02■□□□□ 0.8
CLSTN3-213ENST00000541953 GNAI1P63096 354 aa20.02■□□□□ 0.8
CLSTN3-213ENST00000541953 CCDC191Q8NCU4 936 aa20.02■□□□□ 0.8
CLSTN3-213ENST00000541953 METTL22Q9BUU2 404 aaPredicted RBP20.02■□□□□ 0.8
CLSTN3-213ENST00000541953 MCOLN1Q9GZU1 580 aa20.02■□□□□ 0.8
CLSTN3-213ENST00000541953 GBA2Q9HCG7 927 aaPredicted RBP20.02■□□□□ 0.8
CLSTN3-213ENST00000541953 SCAF8Q9UPN6 1271 aaKnown RBP20.02■□□□□ 0.8
CLSTN3-213ENST00000541953 PDE8AO60658 829 aa20.01■□□□□ 0.79
CLSTN3-213ENST00000541953 TSR2Q969E8 191 aaKnown RBP20.01■□□□□ 0.79
CLSTN3-213ENST00000541953 ZC3H12CQ9C0D7 883 aaKnown RBP20.01■□□□□ 0.79
CLSTN3-213ENST00000541953 CWC25Q9NXE8 425 aaPredicted RBP20.01■□□□□ 0.79
CLSTN3-213ENST00000541953 ANKIB1Q9P2G1 1089 aa20.01■□□□□ 0.79
CLSTN3-213ENST00000541953 GGA1Q9UJY5 639 aa20.01■□□□□ 0.79
CLSTN3-213ENST00000541953 MAP3K2Q9Y2U5 619 aa20.01■□□□□ 0.79
CLSTN3-213ENST00000541953 ZNF609O15014 1411 aa20.01■□□□□ 0.79
CLSTN3-213ENST00000541953 NOGQ13253 232 aa20■□□□□ 0.79
CLSTN3-213ENST00000541953 CCDC152Q4G0S7 254 aa20■□□□□ 0.79
CLSTN3-213ENST00000541953 RGMBQ6NW40 437 aa20■□□□□ 0.79
CLSTN3-213ENST00000541953 ZNF280AP59817 542 aaPredicted RBP19.99■□□□□ 0.79
CLSTN3-213ENST00000541953 G2E3Q7L622 706 aa19.99■□□□□ 0.79
CLSTN3-213ENST00000541953 DCPSQ96C86 337 aaKnown RBP19.99■□□□□ 0.79
CLSTN3-213ENST00000541953 GMLQ99445 158 aa19.99■□□□□ 0.79
CLSTN3-213ENST00000541953 MXD3Q9BW11 206 aa19.99■□□□□ 0.79
CLSTN3-213ENST00000541953 CA12O43570 354 aa19.98■□□□□ 0.79
CLSTN3-213ENST00000541953 CWF19L2Q2TBE0 894 aaKnown RBP19.98■□□□□ 0.79
CLSTN3-213ENST00000541953 ANGEL2Q5VTE6 544 aaKnown RBP19.98■□□□□ 0.79
CLSTN3-213ENST00000541953 RSBN1LQ6PCB5 846 aaPredicted RBP19.98■□□□□ 0.79
CLSTN3-213ENST00000541953 CDCA5Q96FF9 252 aa19.98■□□□□ 0.79
CLSTN3-213ENST00000541953 CTSWP56202 376 aa19.97■□□□□ 0.79
CLSTN3-213ENST00000541953 KIF23Q02241 960 aaPredicted RBP19.97■□□□□ 0.79
CLSTN3-213ENST00000541953 GREM2Q9H772 168 aa19.97■□□□□ 0.79
CLSTN3-213ENST00000541953 XDHP47989 1333 aa19.97■□□□□ 0.79
CLSTN3-213ENST00000541953 PI4KAP2A4QPH2 592 aa19.96■□□□□ 0.79
CLSTN3-213ENST00000541953 SCARF1Q14162 830 aa19.96■□□□□ 0.79
CLSTN3-213ENST00000541953 MOB2Q70IA6 237 aa19.96■□□□□ 0.79
CLSTN3-213ENST00000541953 ANKRD18AQ8IVF6 992 aa19.96■□□□□ 0.79
CLSTN3-213ENST00000541953 PI4KAP1Q8N8J0 262 aa19.96■□□□□ 0.79
CLSTN3-213ENST00000541953 C2orf69Q8N8R5 385 aa19.96■□□□□ 0.79
CLSTN3-213ENST00000541953 TTLL11Q8NHH1 800 aa19.96■□□□□ 0.79
CLSTN3-213ENST00000541953 SLC10A3P09131 477 aa19.95■□□□□ 0.78
CLSTN3-213ENST00000541953 ZNF157P51786 506 aaPredicted RBP19.95■□□□□ 0.78
CLSTN3-213ENST00000541953 DGKZQ13574 1117 aa19.95■□□□□ 0.78
CLSTN3-213ENST00000541953 CCDC30Q5VVM6 783 aa19.95■□□□□ 0.78
CLSTN3-213ENST00000541953 SULF1Q8IWU6 871 aa19.95■□□□□ 0.78
CLSTN3-213ENST00000541953 PAPPA2Q9BXP8 1791 aa19.95■□□□□ 0.78
CLSTN3-213ENST00000541953 AKAP11Q9UKA4 1901 aa19.94■□□□□ 0.78
CLSTN3-213ENST00000541953 KLRK1P26718 216 aa19.94■□□□□ 0.78
CLSTN3-213ENST00000541953 KSR2Q6VAB6 950 aa19.94■□□□□ 0.78
CLSTN3-213ENST00000541953 TXNRD3Q86VQ6 643 aa19.94■□□□□ 0.78
CLSTN3-213ENST00000541953 AGBL3Q8NEM8 1001 aa19.94■□□□□ 0.78
CLSTN3-213ENST00000541953 MINPP1Q9UNW1 487 aa19.94■□□□□ 0.78
CLSTN3-213ENST00000541953 G3V3G9 751 aa19.93■□□□□ 0.78
CLSTN3-213ENST00000541953 RGS19P49795 217 aa19.93■□□□□ 0.78
CLSTN3-213ENST00000541953 CALD1Q05682 793 aaKnown RBP19.93■□□□□ 0.78
CLSTN3-213ENST00000541953 DCAF8Q5TAQ9 597 aa19.93■□□□□ 0.78
CLSTN3-213ENST00000541953 PRAMEF18Q5VWM3 479 aa19.93■□□□□ 0.78
CLSTN3-213ENST00000541953 RASAL3Q86YV0 1011 aa19.93■□□□□ 0.78
CLSTN3-213ENST00000541953 MYOZ2Q9NPC6 264 aa19.93■□□□□ 0.78
CLSTN3-213ENST00000541953 RNF186Q9NXI6 227 aa19.93■□□□□ 0.78
CLSTN3-213ENST00000541953 MED23Q9ULK4 1368 aa19.93■□□□□ 0.78
CLSTN3-213ENST00000541953 NEURL1BA8MQ27 555 aa19.92■□□□□ 0.78
CLSTN3-213ENST00000541953 TRPA1O75762 1119 aa19.92■□□□□ 0.78
CLSTN3-213ENST00000541953 DDX58O95786 925 aaKnown RBP19.92■□□□□ 0.78
CLSTN3-213ENST00000541953 ATP2B4P23634 1241 aa19.92■□□□□ 0.78
CLSTN3-213ENST00000541953 NBPF9Q3BBW0 867 aa19.92■□□□□ 0.78
CLSTN3-213ENST00000541953 CSRNP1Q96S65 589 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms