RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 ATP2B4P23634 1241 aa23.4■■□□□ 1.34
VPS33A-205ENST00000541169 IARSP41252 1262 aaKnown RBP23.4■■□□□ 1.34
VPS33A-205ENST00000541169 OLFM4Q6UX06 510 aa23.4■■□□□ 1.34
VPS33A-205ENST00000541169 CNNM1Q9NRU3 951 aa23.4■■□□□ 1.34
VPS33A-205ENST00000541169 GGA1Q9UJY5 639 aa23.4■■□□□ 1.34
VPS33A-205ENST00000541169 LEMD3Q9Y2U8 911 aa23.4■■□□□ 1.34
VPS33A-205ENST00000541169 DICER1Q9UPY3 1922 aaKnown RBP23.39■■□□□ 1.34
VPS33A-205ENST00000541169 MROH5Q6ZUA9 1318 aa23.39■■□□□ 1.34
VPS33A-205ENST00000541169 RASSF7Q02833 373 aa23.39■■□□□ 1.33
VPS33A-205ENST00000541169 AAMPQ13685 434 aa23.39■■□□□ 1.33
VPS33A-205ENST00000541169 C9orf131Q5VYM1 1079 aa23.39■■□□□ 1.33
VPS33A-205ENST00000541169 JDP2Q8WYK2 163 aa23.39■■□□□ 1.33
VPS33A-205ENST00000541169 RNF181Q9P0P0 153 aa23.39■■□□□ 1.33
VPS33A-205ENST00000541169 SPEF2Q9C093 1822 aa23.38■■□□□ 1.33
VPS33A-205ENST00000541169 SRGAP3O43295 1099 aa23.38■■□□□ 1.33
VPS33A-205ENST00000541169 GPSM2P81274 684 aa23.38■■□□□ 1.33
VPS33A-205ENST00000541169 ZBTB40Q9NUA8 1239 aa23.38■■□□□ 1.33
VPS33A-205ENST00000541169 LTBP1Q14766 1721 aa23.38■■□□□ 1.33
VPS33A-205ENST00000541169 CIAO1O76071 339 aa23.37■■□□□ 1.33
VPS33A-205ENST00000541169 COPRSQ9NQ92 184 aa23.37■■□□□ 1.33
VPS33A-205ENST00000541169 COL4A1P02462 1669 aa23.37■■□□□ 1.33
VPS33A-205ENST00000541169 CCDC88AQ3V6T2 1871 aa23.36■■□□□ 1.33
VPS33A-205ENST00000541169 C6orf229H3BNL8 230 aa23.36■■□□□ 1.33
VPS33A-205ENST00000541169 RFX5P48382 616 aaPredicted RBP23.36■■□□□ 1.33
VPS33A-205ENST00000541169 ATP8B2P98198 1209 aa23.36■■□□□ 1.33
VPS33A-205ENST00000541169 CHRNDQ07001 517 aa23.36■■□□□ 1.33
VPS33A-205ENST00000541169 KIAA2012Q0VF49 1180 aa23.36■■□□□ 1.33
VPS33A-205ENST00000541169 WASHC4Q2M389 1173 aa23.36■■□□□ 1.33
VPS33A-205ENST00000541169 RPAP2Q8IXW5 612 aaPredicted RBP23.36■■□□□ 1.33
VPS33A-205ENST00000541169 TBC1D16Q8TBP0 767 aa23.36■■□□□ 1.33
VPS33A-205ENST00000541169 ZC3H12CQ9C0D7 883 aaKnown RBP23.36■■□□□ 1.33
VPS33A-205ENST00000541169 ZNF277Q9NRM2 450 aaPredicted RBP23.36■■□□□ 1.33
VPS33A-205ENST00000541169 UFL1O94874 794 aa23.35■■□□□ 1.33
VPS33A-205ENST00000541169 PTPN12Q05209 780 aaKnown RBP23.35■■□□□ 1.33
VPS33A-205ENST00000541169 C20orf194Q5TEA3 1177 aa23.35■■□□□ 1.33
VPS33A-205ENST00000541169 LARGE2Q8N3Y3 721 aa23.35■■□□□ 1.33
VPS33A-205ENST00000541169 ZNF594Q96JF6 807 aaPredicted RBP23.35■■□□□ 1.33
VPS33A-205ENST00000541169 RIPOR2Q9Y4F9 1068 aa23.35■■□□□ 1.33
VPS33A-205ENST00000541169 EYA2O00167 538 aa23.34■■□□□ 1.33
VPS33A-205ENST00000541169 PPIP5K2O43314 1243 aa23.34■■□□□ 1.33
VPS33A-205ENST00000541169 KCNJ4P48050 445 aa23.34■■□□□ 1.33
VPS33A-205ENST00000541169 POLLQ9UGP5 575 aa23.34■■□□□ 1.33
VPS33A-205ENST00000541169 DUOX1Q9NRD9 1551 aa23.33■■□□□ 1.33
VPS33A-205ENST00000541169 HMMRO75330 724 aa23.33■■□□□ 1.33
VPS33A-205ENST00000541169 YY1P25490 414 aa23.33■■□□□ 1.33
VPS33A-205ENST00000541169 DPY19L2Q6NUT2 758 aa23.33■■□□□ 1.33
VPS33A-205ENST00000541169 NIM1KQ8IY84 436 aa23.33■■□□□ 1.33
VPS33A-205ENST00000541169 SSH3Q8TE77 659 aa23.33■■□□□ 1.33
VPS33A-205ENST00000541169 ZNF804BA4D1E1 1349 aa23.33■■□□□ 1.32
VPS33A-205ENST00000541169 MED23Q9ULK4 1368 aa23.32■■□□□ 1.32
VPS33A-205ENST00000541169 IL15P40933 162 aaPredicted RBP23.32■■□□□ 1.32
VPS33A-205ENST00000541169 UBE4AQ14139 1066 aa23.32■■□□□ 1.32
VPS33A-205ENST00000541169 TIAM2Q8IVF5 1701 aa23.31■■□□□ 1.32
VPS33A-205ENST00000541169 POLA2Q14181 598 aa23.31■■□□□ 1.32
VPS33A-205ENST00000541169 C15orf52Q6ZUT6 534 aaKnown RBP23.31■■□□□ 1.32
VPS33A-205ENST00000541169 G3V3G9 751 aa23.3■■□□□ 1.32
VPS33A-205ENST00000541169 PRELPP51888 382 aa23.3■■□□□ 1.32
VPS33A-205ENST00000541169 AOC3Q16853 763 aa23.3■■□□□ 1.32
VPS33A-205ENST00000541169 METTL24Q5JXM2 366 aa23.3■■□□□ 1.32
VPS33A-205ENST00000541169 DCAF8Q5TAQ9 597 aa23.3■■□□□ 1.32
VPS33A-205ENST00000541169 CEP85Q6P2H3 762 aa23.3■■□□□ 1.32
VPS33A-205ENST00000541169 ZNRF3Q9ULT6 936 aa23.3■■□□□ 1.32
VPS33A-205ENST00000541169 SUPT16HQ9Y5B9 1047 aaKnown RBP23.3■■□□□ 1.32
VPS33A-205ENST00000541169 FZD9O00144 591 aa23.29■■□□□ 1.32
VPS33A-205ENST00000541169 PDE8BO95263 885 aa23.29■■□□□ 1.32
VPS33A-205ENST00000541169 CEP126Q9P2H0 1117 aa23.29■■□□□ 1.32
VPS33A-205ENST00000541169 UTRNP46939 3433 aa23.29■■□□□ 1.32
VPS33A-205ENST00000541169 KDM2BQ8NHM5 1336 aa23.29■■□□□ 1.32
VPS33A-205ENST00000541169 A0A1B0GUL6 1792 aa23.28■■□□□ 1.32
VPS33A-205ENST00000541169 PNMA6EA0A0J9YXQ4 647 aa23.28■■□□□ 1.32
VPS33A-205ENST00000541169 EIF6P56537 245 aaKnown RBP23.28■■□□□ 1.32
VPS33A-205ENST00000541169 G3BP1Q13283 466 aaKnown RBP eCLIP23.28■■□□□ 1.322e-6■■■■□ 22
VPS33A-205ENST00000541169 HSP90AB4PQ58FF6 505 aa23.28■■□□□ 1.32
VPS33A-205ENST00000541169 PUS3Q9BZE2 481 aaKnown RBP23.28■■□□□ 1.32
VPS33A-205ENST00000541169 C1orf115Q9H7X2 142 aa23.28■■□□□ 1.32
VPS33A-205ENST00000541169 PUM3Q15397 648 aaKnown RBP23.27■■□□□ 1.32
VPS33A-205ENST00000541169 LRRC24Q50LG9 513 aa23.27■■□□□ 1.32
VPS33A-205ENST00000541169 PODNQ7Z5L7 613 aa23.27■■□□□ 1.32
VPS33A-205ENST00000541169 KLHDC4Q8TBB5 520 aa23.27■■□□□ 1.32
VPS33A-205ENST00000541169 AKAP2Q9Y2D5 859 aa23.27■■□□□ 1.32
VPS33A-205ENST00000541169 GLTPD2A6NH11 291 aa23.26■■□□□ 1.31
VPS33A-205ENST00000541169 ATG9AQ7Z3C6 839 aa23.26■■□□□ 1.31
VPS33A-205ENST00000541169 VGLL2Q8N8G2 317 aa23.26■■□□□ 1.31
VPS33A-205ENST00000541169 COA1Q9GZY4 146 aa23.26■■□□□ 1.31
VPS33A-205ENST00000541169 NOP58Q9Y2X3 529 aaKnown RBP23.26■■□□□ 1.31
VPS33A-205ENST00000541169 TAF5LO75529 589 aa23.25■■□□□ 1.31
VPS33A-205ENST00000541169 CENPBP07199 599 aaPredicted RBP23.25■■□□□ 1.31
VPS33A-205ENST00000541169 TNIP1Q15025 636 aa23.25■■□□□ 1.31
VPS33A-205ENST00000541169 SLC51AQ86UW1 340 aa23.25■■□□□ 1.31
VPS33A-205ENST00000541169 ERC1Q8IUD2 1116 aa23.25■■□□□ 1.31
VPS33A-205ENST00000541169 HELBQ8NG08 1087 aaPredicted RBP23.25■■□□□ 1.31
VPS33A-205ENST00000541169 SIL1Q9H173 461 aa23.25■■□□□ 1.31
VPS33A-205ENST00000541169 RIMBP2O15034 1052 aa23.24■■□□□ 1.31
VPS33A-205ENST00000541169 IFIT1P09914 478 aaKnown RBP23.24■■□□□ 1.31
VPS33A-205ENST00000541169 ZNF804AQ7Z570 1209 aa23.24■■□□□ 1.31
VPS33A-205ENST00000541169 GPC2Q8N158 579 aa23.24■■□□□ 1.31
VPS33A-205ENST00000541169 SURF6O75683 361 aaKnown RBP23.23■■□□□ 1.31
VPS33A-205ENST00000541169 CAVIN4Q5BKX8 364 aa23.23■■□□□ 1.31
VPS33A-205ENST00000541169 LPIN2Q92539 896 aa23.23■■□□□ 1.31
VPS33A-205ENST00000541169 PA2G4Q9UQ80 394 aaKnown RBP23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms