RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TBC1D16Q8TBP0 767 aa15.23■□□□□ 0.03
CLSTN3-209ENST00000539982 ZNF428Q96B54 188 aa15.23■□□□□ 0.03
CLSTN3-209ENST00000539982 CDCA5Q96FF9 252 aa15.23■□□□□ 0.03
CLSTN3-209ENST00000539982 FAM89AQ96GI7 184 aa15.23■□□□□ 0.03
CLSTN3-209ENST00000539982 ZC3H12CQ9C0D7 883 aaKnown RBP15.23■□□□□ 0.03
CLSTN3-209ENST00000539982 RPS8P62241 208 aaKnown RBP15.22■□□□□ 0.03
CLSTN3-209ENST00000539982 PLBD2Q8NHP8 589 aa15.22■□□□□ 0.03
CLSTN3-209ENST00000539982 ISCA1Q9BUE6 129 aa15.22■□□□□ 0.03
CLSTN3-209ENST00000539982 GGA3Q9NZ52 723 aa15.22■□□□□ 0.03
CLSTN3-209ENST00000539982 FKBP1BP68106 108 aa15.21■□□□□ 0.03
CLSTN3-209ENST00000539982 PKN2Q16513 984 aaKnown RBP15.21■□□□□ 0.03
CLSTN3-209ENST00000539982 ANKRD13DQ6ZTN6 518 aa15.21■□□□□ 0.03
CLSTN3-209ENST00000539982 HPS5Q9UPZ3 1129 aa15.21■□□□□ 0.03
CLSTN3-209ENST00000539982 ASTN2O75129 1339 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-209ENST00000539982 G3V3G9 751 aa15.2■□□□□ 0.02
CLSTN3-209ENST00000539982 ZNF280AP59817 542 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-209ENST00000539982 LMOD3Q0VAK6 560 aa15.2■□□□□ 0.02
CLSTN3-209ENST00000539982 SCARF1Q14162 830 aa15.2■□□□□ 0.02
CLSTN3-209ENST00000539982 DCAF8Q5TAQ9 597 aa15.2■□□□□ 0.02
CLSTN3-209ENST00000539982 RASAL3Q86YV0 1011 aa15.2■□□□□ 0.02
CLSTN3-209ENST00000539982 PODXL2Q9NZ53 605 aa15.2■□□□□ 0.02
CLSTN3-209ENST00000539982 DDX60Q8IY21 1712 aaKnown RBP15.2■□□□□ 0.02
CLSTN3-209ENST00000539982 ATP5J2-PTCD1G3V325 749 aa15.19■□□□□ 0.02
CLSTN3-209ENST00000539982 TMPOP42166 694 aaKnown RBP15.19■□□□□ 0.02
CLSTN3-209ENST00000539982 ANGEL2Q5VTE6 544 aaKnown RBP15.19■□□□□ 0.02
CLSTN3-209ENST00000539982 AGBL3Q8NEM8 1001 aa15.19■□□□□ 0.02
CLSTN3-209ENST00000539982 CHPF2Q9P2E5 772 aa15.19■□□□□ 0.02
CLSTN3-209ENST00000539982 CHL1O00533 1208 aa15.18■□□□□ 0.02
CLSTN3-209ENST00000539982 IRS4O14654 1257 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-209ENST00000539982 TRIM28Q13263 835 aaKnown RBP15.18■□□□□ 0.02
CLSTN3-209ENST00000539982 KRT24Q2M2I5 525 aa15.18■□□□□ 0.02
CLSTN3-209ENST00000539982 RTL5Q5HYW3 569 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-209ENST00000539982 RSBN1LQ6PCB5 846 aaPredicted RBP15.18■□□□□ 0.02
CLSTN3-209ENST00000539982 HDAC9Q9UKV0 1011 aa15.18■□□□□ 0.02
CLSTN3-209ENST00000539982 ZNF296Q8WUU4 475 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-209ENST00000539982 ANKIB1Q9P2G1 1089 aa15.17■□□□□ 0.02
CLSTN3-209ENST00000539982 DBF4Q9UBU7 674 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-209ENST00000539982 COL4A1P02462 1669 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 UFL1O94874 794 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 TBC1D8O95759 1140 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 USP17L8P0C7I0 530 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 HDGFL1Q5TGJ6 251 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 MYOZ2Q9NPC6 264 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 GGA1Q9UJY5 639 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 SCN9AQ15858 1988 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 ZNF609O15014 1411 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 PITPNM2Q9BZ72 1349 aa15.16■□□□□ 0.02
CLSTN3-209ENST00000539982 HOXB7P09629 217 aa15.15■□□□□ 0.02
CLSTN3-209ENST00000539982 HSP90B1P14625 803 aaKnown RBP15.15■□□□□ 0.02
CLSTN3-209ENST00000539982 TM4SF4P48230 202 aa15.15■□□□□ 0.02
CLSTN3-209ENST00000539982 MOB2Q70IA6 237 aa15.15■□□□□ 0.02
CLSTN3-209ENST00000539982 GMLQ99445 158 aa15.15■□□□□ 0.02
CLSTN3-209ENST00000539982 SEC31BQ9NQW1 1179 aa15.15■□□□□ 0.02
CLSTN3-209ENST00000539982 HYPKQ9NX55 129 aa15.15■□□□□ 0.02
CLSTN3-209ENST00000539982 UBE2Q2LH0YL09 131 aa15.14■□□□□ 0.01
CLSTN3-209ENST00000539982 NOM1Q5C9Z4 860 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-209ENST00000539982 ZBTB38Q8NAP3 1195 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-209ENST00000539982 LAS1LQ9Y4W2 734 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-209ENST00000539982 PAPPA2Q9BXP8 1791 aa15.13■□□□□ 0.01
CLSTN3-209ENST00000539982 USP17L3A6NCW0 530 aa15.13■□□□□ 0.01
CLSTN3-209ENST00000539982 USP17L4A6NCW7 530 aa15.13■□□□□ 0.01
CLSTN3-209ENST00000539982 GPR25O00155 361 aa15.13■□□□□ 0.01
CLSTN3-209ENST00000539982 NEUROD2Q15784 382 aa15.13■□□□□ 0.01
CLSTN3-209ENST00000539982 USP17L1Q7RTZ2 530 aa15.13■□□□□ 0.01
CLSTN3-209ENST00000539982 PODNQ7Z5L7 613 aa15.13■□□□□ 0.01
CLSTN3-209ENST00000539982 CCDC152Q4G0S7 254 aa15.12■□□□□ 0.01
CLSTN3-209ENST00000539982 PRAMEF18Q5VWM3 479 aa15.12■□□□□ 0.01
CLSTN3-209ENST00000539982 FBXO46Q6PJ61 603 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-209ENST00000539982 RIC3Q7Z5B4 369 aa15.12■□□□□ 0.01
CLSTN3-209ENST00000539982 SCAF8Q9UPN6 1271 aaKnown RBP15.12■□□□□ 0.01
CLSTN3-209ENST00000539982 ATP2B4P23634 1241 aa15.11■□□□□ 0.01
CLSTN3-209ENST00000539982 TTLL12Q14166 644 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-209ENST00000539982 TRIM35Q9UPQ4 493 aa15.11■□□□□ 0.01
CLSTN3-209ENST00000539982 XDHP47989 1333 aa15.11■□□□□ 0.01
CLSTN3-209ENST00000539982 PDE8AO60658 829 aa15.1■□□□□ 0.01
CLSTN3-209ENST00000539982 NF2P35240 595 aa15.1■□□□□ 0.01
CLSTN3-209ENST00000539982 NBPF9Q3BBW0 867 aa15.1■□□□□ 0.01
CLSTN3-209ENST00000539982 GCC1Q96CN9 775 aa15.1■□□□□ 0.01
CLSTN3-209ENST00000539982 CFHR5Q9BXR6 569 aa15.1■□□□□ 0.01
CLSTN3-209ENST00000539982 PSME4Q14997 1843 aa15.09■□□□□ 0.01
CLSTN3-209ENST00000539982 FKTNO75072 461 aa15.09■□□□□ 0.01
CLSTN3-209ENST00000539982 PCCAP05165 728 aaPredicted RBP15.09■□□□□ 0.01
CLSTN3-209ENST00000539982 GOLGA2Q08379 1002 aa15.09■□□□□ 0.01
CLSTN3-209ENST00000539982 SREBF2Q12772 1141 aa15.09■□□□□ 0.01
CLSTN3-209ENST00000539982 DUSP27Q5VZP5 1158 aa15.09■□□□□ 0.01
CLSTN3-209ENST00000539982 ANKRD18AQ8IVF6 992 aa15.09■□□□□ 0.01
CLSTN3-209ENST00000539982 OGFOD1Q8N543 542 aa15.09■□□□□ 0.01
CLSTN3-209ENST00000539982 CCDC191Q8NCU4 936 aa15.09■□□□□ 0.01
CLSTN3-209ENST00000539982 CCDC146Q8IYE0 955 aa15.08■□□□□ 0
CLSTN3-209ENST00000539982 CCDC85AQ96PX6 553 aaPredicted RBP15.08■□□□□ 0
CLSTN3-209ENST00000539982 MYD88Q99836 296 aa15.08■□□□□ 0
CLSTN3-209ENST00000539982 WNT10BO00744 389 aa15.07■□□□□ 0
CLSTN3-209ENST00000539982 MMP14P50281 582 aa15.07■□□□□ 0
CLSTN3-209ENST00000539982 PTPN12Q05209 780 aaKnown RBP15.07■□□□□ 0
CLSTN3-209ENST00000539982 MKRN3Q13064 507 aaKnown RBP15.07■□□□□ 0
CLSTN3-209ENST00000539982 RALBP1Q15311 655 aa15.07■□□□□ 0
CLSTN3-209ENST00000539982 DACT2Q5SW24 774 aa15.07■□□□□ 0
CLSTN3-209ENST00000539982 ARMC9Q7Z3E5 817 aa15.07■□□□□ 0
CLSTN3-209ENST00000539982 JARID2Q92833 1246 aaPredicted RBP15.07■□□□□ 0
CLSTN3-209ENST00000539982 RUNDC1Q96C34 613 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms