RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 GHRHP01286 108 aa7.41□□□□□ -1.22
VPS13A-213ENST00000539950 NRG1Q02297 640 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-213ENST00000539950 COL13A1Q5TAT6 717 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-213ENST00000539950 GDF6Q6KF10 455 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-213ENST00000539950 TXNRD3Q86VQ6 643 aa7.41□□□□□ -1.22
VPS13A-213ENST00000539950 ATCAYQ86WG3 371 aa7.41□□□□□ -1.22
VPS13A-213ENST00000539950 ABTB2Q8N961 1025 aa7.41□□□□□ -1.22
VPS13A-213ENST00000539950 OR13H1Q8NG92 308 aa7.41□□□□□ -1.22
VPS13A-213ENST00000539950 DYRK3O43781 588 aa7.4□□□□□ -1.22
VPS13A-213ENST00000539950 TRIM33Q9UPN9 1127 aa7.4□□□□□ -1.22
VPS13A-213ENST00000539950 IL22RA1Q8N6P7 574 aa7.39□□□□□ -1.23
VPS13A-213ENST00000539950 RBSNQ9H1K0 784 aa7.39□□□□□ -1.23
VPS13A-213ENST00000539950 FNDC3AQ9Y2H6 1198 aaKnown RBP7.39□□□□□ -1.23
VPS13A-213ENST00000539950 CYP2E1P05181 493 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-213ENST00000539950 ATP11AP98196 1134 aa7.38□□□□□ -1.23
VPS13A-213ENST00000539950 XP32Q5T750 250 aa7.38□□□□□ -1.23
VPS13A-213ENST00000539950 HELQQ8TDG4 1101 aa7.38□□□□□ -1.23
VPS13A-213ENST00000539950 NUDT16Q96DE0 195 aaKnown RBP7.38□□□□□ -1.23
VPS13A-213ENST00000539950 SSBP4Q9BWG4 385 aaPredicted RBP7.38□□□□□ -1.23
VPS13A-213ENST00000539950 CARNS1A5YM72 827 aa7.37□□□□□ -1.23
VPS13A-213ENST00000539950 DLL1O00548 723 aa7.37□□□□□ -1.23
VPS13A-213ENST00000539950 PPP1R15AO75807 674 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-213ENST00000539950 SSFA2P28290 1259 aa7.37□□□□□ -1.23
VPS13A-213ENST00000539950 TTC39BQ5VTQ0 682 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-213ENST00000539950 IGF2-ASQ6U949 168 aa7.37□□□□□ -1.23
VPS13A-213ENST00000539950 Q8N3U1 123 aa7.37□□□□□ -1.23
VPS13A-213ENST00000539950 ABI2Q9NYB9 513 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-213ENST00000539950 TMEM63CQ9P1W3 806 aa7.37□□□□□ -1.23
VPS13A-213ENST00000539950 NOS3P29474 1203 aa7.36□□□□□ -1.23
VPS13A-213ENST00000539950 IREB2P48200 963 aaKnown RBP7.36□□□□□ -1.23
VPS13A-213ENST00000539950 SETDB1Q15047 1291 aa7.36□□□□□ -1.23
VPS13A-213ENST00000539950 ADAMTSL4Q6UY14 1074 aa7.36□□□□□ -1.23
VPS13A-213ENST00000539950 C14orf37Q86TY3 774 aa7.36□□□□□ -1.23
VPS13A-213ENST00000539950 GTF3C2Q8WUA4 911 aaPredicted RBP7.36□□□□□ -1.23
VPS13A-213ENST00000539950 WFDC12Q8WWY7 111 aa7.36□□□□□ -1.23
VPS13A-213ENST00000539950 EDEM1Q92611 657 aa7.36□□□□□ -1.23
VPS13A-213ENST00000539950 TP53INP1Q96A56 240 aa7.36□□□□□ -1.23
VPS13A-213ENST00000539950 MPSTP25325 297 aa7.35□□□□□ -1.23
VPS13A-213ENST00000539950 HYAL2Q12891 473 aa7.35□□□□□ -1.23
VPS13A-213ENST00000539950 MTMR3Q13615 1198 aa7.35□□□□□ -1.23
VPS13A-213ENST00000539950 PRSS36Q5K4E3 855 aa7.35□□□□□ -1.23
VPS13A-213ENST00000539950 ZNF438Q7Z4V0 828 aa7.35□□□□□ -1.23
VPS13A-213ENST00000539950 RASSF4Q9H2L5 321 aa7.35□□□□□ -1.23
VPS13A-213ENST00000539950 ELP3Q9H9T3 547 aa7.35□□□□□ -1.23
VPS13A-213ENST00000539950 CNTN3Q9P232 1028 aa7.35□□□□□ -1.23
VPS13A-213ENST00000539950 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.35□□□□□ -1.23
VPS13A-213ENST00000539950 A6NHS1 94 aa7.34□□□□□ -1.23
VPS13A-213ENST00000539950 KIF4AO95239 1232 aa7.34□□□□□ -1.23
VPS13A-213ENST00000539950 H2AFB1P0C5Y9 115 aa7.34□□□□□ -1.23
VPS13A-213ENST00000539950 H2AFB2P0C5Z0 115 aa7.34□□□□□ -1.23
VPS13A-213ENST00000539950 DNM1Q05193 864 aaKnown RBP7.34□□□□□ -1.23
VPS13A-213ENST00000539950 FOXD4L6Q3SYB3 417 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-213ENST00000539950 NOM1Q5C9Z4 860 aaKnown RBP7.34□□□□□ -1.23
VPS13A-213ENST00000539950 CEP135Q66GS9 1140 aa7.34□□□□□ -1.23
VPS13A-213ENST00000539950 PDE12Q6L8Q7 609 aaKnown RBP7.34□□□□□ -1.23
VPS13A-213ENST00000539950 PHLDB3Q6NSJ2 640 aa7.34□□□□□ -1.23
VPS13A-213ENST00000539950 FOXD4L3Q6VB84 417 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-213ENST00000539950 LACRTQ9GZZ8 138 aa7.34□□□□□ -1.23
VPS13A-213ENST00000539950 GGNBP2Q9H3C7 697 aa7.34□□□□□ -1.23
VPS13A-213ENST00000539950 PDGFAP04085 211 aa7.33□□□□□ -1.24
VPS13A-213ENST00000539950 EIF1AXP47813 144 aaKnown RBP7.33□□□□□ -1.24
VPS13A-213ENST00000539950 ZMYM1Q5SVZ6 1142 aa7.33□□□□□ -1.24
VPS13A-213ENST00000539950 MEGF10Q96KG7 1140 aa7.33□□□□□ -1.24
VPS13A-213ENST00000539950 SPACA7Q96KW9 195 aa7.33□□□□□ -1.24
VPS13A-213ENST00000539950 KANSL3Q9P2N6 904 aa7.33□□□□□ -1.24
VPS13A-213ENST00000539950 PPME1Q9Y570 386 aa7.33□□□□□ -1.24
VPS13A-213ENST00000539950 ALX3O95076 343 aa7.32□□□□□ -1.24
VPS13A-213ENST00000539950 TXNDC11Q6PKC3 985 aa7.32□□□□□ -1.24
VPS13A-213ENST00000539950 NCAPG2Q86XI2 1143 aa7.32□□□□□ -1.24
VPS13A-213ENST00000539950 CEP120Q8N960 986 aa7.32□□□□□ -1.24
VPS13A-213ENST00000539950 GALNT11Q8NCW6 608 aa7.32□□□□□ -1.24
VPS13A-213ENST00000539950 LINC01387J3KSC0 135 aa7.31□□□□□ -1.24
VPS13A-213ENST00000539950 SMNDC1O75940 238 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS13A-213ENST00000539950 C8orf34Q49A92 452 aa7.31□□□□□ -1.24
VPS13A-213ENST00000539950 XKR5Q6UX68 686 aa7.31□□□□□ -1.24
VPS13A-213ENST00000539950 CACTIN-AS1Q8N1I8 211 aa7.31□□□□□ -1.24
VPS13A-213ENST00000539950 C1orf127Q8N9H9 656 aa7.31□□□□□ -1.24
VPS13A-213ENST00000539950 PBX4Q9BYU1 374 aa7.31□□□□□ -1.24
VPS13A-213ENST00000539950 MRPL18Q9H0U6 180 aaKnown RBP7.31□□□□□ -1.24
VPS13A-213ENST00000539950 MUC3BQ9H195 1237 aa7.31□□□□□ -1.24
VPS13A-213ENST00000539950 AKTIPQ9H8T0 292 aa7.31□□□□□ -1.24
VPS13A-213ENST00000539950 SRA1Q9HD15 236 aaKnown RBP7.31□□□□□ -1.24
VPS13A-213ENST00000539950 F8W735 103 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-213ENST00000539950 TM4SF5O14894 197 aa7.3□□□□□ -1.24
VPS13A-213ENST00000539950 RPLP1P05386 114 aaKnown RBP7.3□□□□□ -1.24
VPS13A-213ENST00000539950 ACPPP15309 386 aa7.3□□□□□ -1.24
VPS13A-213ENST00000539950 MZF1P28698 734 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-213ENST00000539950 CDC25BP30305 580 aa7.3□□□□□ -1.24
VPS13A-213ENST00000539950 MAP4K3Q8IVH8 894 aa7.3□□□□□ -1.24
VPS13A-213ENST00000539950 POP1Q99575 1024 aaKnown RBP7.3□□□□□ -1.24
VPS13A-213ENST00000539950 SH2B1Q9NRF2 756 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-213ENST00000539950 SALL4Q9UJQ4 1053 aa7.3□□□□□ -1.24
VPS13A-213ENST00000539950 POLIQ9UNA4 740 aa7.3□□□□□ -1.24
VPS13A-213ENST00000539950 NPR3P17342 541 aa7.29□□□□□ -1.24
VPS13A-213ENST00000539950 EPHA1P21709 976 aa7.29□□□□□ -1.24
VPS13A-213ENST00000539950 CDC27P30260 824 aa7.29□□□□□ -1.24
VPS13A-213ENST00000539950 DZIP1LQ8IYY4 767 aaKnown RBP7.29□□□□□ -1.24
VPS13A-213ENST00000539950 AGGF1Q8N302 714 aaeCLIP7.29□□□□□ -1.24
VPS13A-213ENST00000539950 TMEM130Q8N3G9 435 aa7.29□□□□□ -1.24
VPS13A-213ENST00000539950 CHRDQ9H2X0 955 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms