RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 SPEF2Q9C093 1822 aa24.1■■□□□ 1.45
CLIP1-211ENST00000539080 UFL1O94874 794 aa24.09■■□□□ 1.45
CLIP1-211ENST00000539080 SRCIN1Q9C0H9 1055 aa24.09■■□□□ 1.45
CLIP1-211ENST00000539080 CEP350Q5VT06 3117 aa24.08■■□□□ 1.45
CLIP1-211ENST00000539080 YDJCA8MPS7 323 aa24.08■■□□□ 1.45
CLIP1-211ENST00000539080 GRM8O00222 908 aa24.08■■□□□ 1.45
CLIP1-211ENST00000539080 RIMBP2O15034 1052 aa24.08■■□□□ 1.45
CLIP1-211ENST00000539080 ITGA6P23229 1130 aa24.08■■□□□ 1.45
CLIP1-211ENST00000539080 IGHMBP2P38935 993 aaKnown RBP24.08■■□□□ 1.45
CLIP1-211ENST00000539080 SSH1Q8WYL5 1049 aa24.08■■□□□ 1.45
CLIP1-211ENST00000539080 GPRC5DQ9NZD1 345 aa24.08■■□□□ 1.45
CLIP1-211ENST00000539080 RAD17O75943 681 aa24.07■■□□□ 1.44
CLIP1-211ENST00000539080 ATP2B4P23634 1241 aa24.07■■□□□ 1.44
CLIP1-211ENST00000539080 SLC4A10Q6U841 1118 aa24.07■■□□□ 1.44
CLIP1-211ENST00000539080 USP50Q70EL3 339 aaPredicted RBP24.07■■□□□ 1.44
CLIP1-211ENST00000539080 DNAJC5GQ8N7S2 189 aa24.07■■□□□ 1.44
CLIP1-211ENST00000539080 ECE2O60344 883 aa24.06■■□□□ 1.44
CLIP1-211ENST00000539080 EPS15P42566 896 aa24.06■■□□□ 1.44
CLIP1-211ENST00000539080 FAM161AQ3B820 660 aa24.06■■□□□ 1.44
CLIP1-211ENST00000539080 MIER1Q8N108 512 aa24.06■■□□□ 1.44
CLIP1-211ENST00000539080 DBNDD1Q9H9R9 158 aa24.06■■□□□ 1.44
CLIP1-211ENST00000539080 C9orf78Q9NZ63 289 aaPredicted RBP24.06■■□□□ 1.44
CLIP1-211ENST00000539080 MINPP1Q9UNW1 487 aa24.06■■□□□ 1.44
CLIP1-211ENST00000539080 CLEC11AQ9Y240 323 aa24.06■■□□□ 1.44
CLIP1-211ENST00000539080 GMPSP49915 693 aaPredicted RBP24.05■■□□□ 1.44
CLIP1-211ENST00000539080 FOXO4P98177 505 aa24.05■■□□□ 1.44
CLIP1-211ENST00000539080 ADARB2Q9NS39 739 aaKnown RBP24.05■■□□□ 1.44
CLIP1-211ENST00000539080 ANKRD18BA2A2Z9 1011 aa24.04■■□□□ 1.44
CLIP1-211ENST00000539080 MPHOSPH8Q99549 860 aa24.04■■□□□ 1.44
CLIP1-211ENST00000539080 BCL2L13Q9BXK5 485 aa24.04■■□□□ 1.44
CLIP1-211ENST00000539080 PASKQ96RG2 1323 aa24.04■■□□□ 1.44
CLIP1-211ENST00000539080 G3V3G9 751 aa24.03■■□□□ 1.44
CLIP1-211ENST00000539080 ITGBL1O95965 494 aaPredicted RBP24.03■■□□□ 1.44
CLIP1-211ENST00000539080 DCAF8Q5TAQ9 597 aa24.03■■□□□ 1.44
CLIP1-211ENST00000539080 GPR101Q96P66 508 aaPredicted RBP24.03■■□□□ 1.44
CLIP1-211ENST00000539080 HTRA3P83110 453 aa24.02■■□□□ 1.44
CLIP1-211ENST00000539080 IFIT5Q13325 482 aaKnown RBP24.02■■□□□ 1.44
CLIP1-211ENST00000539080 DOK7Q18PE1 504 aa24.02■■□□□ 1.44
CLIP1-211ENST00000539080 DPF2Q92785 391 aa24.02■■□□□ 1.44
CLIP1-211ENST00000539080 KLRG1Q96E93 195 aa24.02■■□□□ 1.44
CLIP1-211ENST00000539080 ANKRD2Q9GZV1 360 aa24.02■■□□□ 1.44
CLIP1-211ENST00000539080 SMC4Q9NTJ3 1288 aa24.02■■□□□ 1.44
CLIP1-211ENST00000539080 LEMD3Q9Y2U8 911 aa24.02■■□□□ 1.44
CLIP1-211ENST00000539080 UTYO14607 1347 aa24.02■■□□□ 1.44
CLIP1-211ENST00000539080 MED23Q9ULK4 1368 aa24.02■■□□□ 1.44
CLIP1-211ENST00000539080 PSMD14O00487 310 aa24.01■■□□□ 1.43
CLIP1-211ENST00000539080 RPS12P25398 132 aaKnown RBP24.01■■□□□ 1.43
CLIP1-211ENST00000539080 CCT4P50991 539 aaKnown RBP24.01■■□□□ 1.43
CLIP1-211ENST00000539080 CNTROBQ8N137 903 aa24.01■■□□□ 1.43
CLIP1-211ENST00000539080 CREBZFQ9NS37 354 aa24.01■■□□□ 1.43
CLIP1-211ENST00000539080 BRPF1P55201 1214 aaPredicted RBP24■■□□□ 1.43
CLIP1-211ENST00000539080 LMBR1LQ6UX01 489 aa24■■□□□ 1.43
CLIP1-211ENST00000539080 PSME4Q14997 1843 aa24■■□□□ 1.43
CLIP1-211ENST00000539080 MAP1SQ66K74 1059 aaPredicted RBP23.99■■□□□ 1.43
CLIP1-211ENST00000539080 PODNQ7Z5L7 613 aa23.99■■□□□ 1.43
CLIP1-211ENST00000539080 CNOT7Q9UIV1 285 aaKnown RBP23.99■■□□□ 1.43
CLIP1-211ENST00000539080 CHMP3Q9Y3E7 222 aa23.99■■□□□ 1.43
CLIP1-211ENST00000539080 ZNF609O15014 1411 aa23.99■■□□□ 1.43
CLIP1-211ENST00000539080 SCN9AQ15858 1988 aa23.98■■□□□ 1.43
CLIP1-211ENST00000539080 H7C1D1 291 aa23.98■■□□□ 1.43
CLIP1-211ENST00000539080 VIL1P09327 827 aaKnown RBP23.98■■□□□ 1.43
CLIP1-211ENST00000539080 CCDC57Q2TAC2 916 aa23.98■■□□□ 1.43
CLIP1-211ENST00000539080 EPHA10Q5JZY3 1008 aa23.98■■□□□ 1.43
CLIP1-211ENST00000539080 NBPF7P0C2Y1 421 aaPredicted RBP23.97■■□□□ 1.43
CLIP1-211ENST00000539080 ZC3H15Q8WU90 426 aaKnown RBP23.97■■□□□ 1.43
CLIP1-211ENST00000539080 KCNQ5Q9NR82 932 aa23.97■■□□□ 1.43
CLIP1-211ENST00000539080 ZBTB12Q9Y330 459 aaPredicted RBP23.97■■□□□ 1.43
CLIP1-211ENST00000539080 ZNF804BA4D1E1 1349 aa23.96■■□□□ 1.43
CLIP1-211ENST00000539080 CHRNDQ07001 517 aa23.96■■□□□ 1.43
CLIP1-211ENST00000539080 MICALL2Q8IY33 904 aa23.96■■□□□ 1.43
CLIP1-211ENST00000539080 SUCLG2Q96I99 432 aa23.96■■□□□ 1.43
CLIP1-211ENST00000539080 JMYQ8N9B5 988 aa23.95■■□□□ 1.42
CLIP1-211ENST00000539080 PGAP2Q9UHJ9 254 aa23.95■■□□□ 1.42
CLIP1-211ENST00000539080 A0A1B0GUL6 1792 aa23.95■■□□□ 1.42
CLIP1-211ENST00000539080 TMEM88BA6NKF7 163 aa23.94■■□□□ 1.42
CLIP1-211ENST00000539080 TAF7LQ5H9L4 462 aa23.94■■□□□ 1.42
CLIP1-211ENST00000539080 AGBL3Q8NEM8 1001 aa23.94■■□□□ 1.42
CLIP1-211ENST00000539080 KAZALD1Q96I82 304 aa23.94■■□□□ 1.42
CLIP1-211ENST00000539080 COA1Q9GZY4 146 aa23.94■■□□□ 1.42
CLIP1-211ENST00000539080 WTIPA6NIX2 430 aaPredicted RBP23.93■■□□□ 1.42
CLIP1-211ENST00000539080 RARSP54136 660 aaKnown RBP23.93■■□□□ 1.42
CLIP1-211ENST00000539080 RABL6Q3YEC7 729 aaPredicted RBP23.93■■□□□ 1.42
CLIP1-211ENST00000539080 USP17L3A6NCW0 530 aa23.92■■□□□ 1.42
CLIP1-211ENST00000539080 USP17L4A6NCW7 530 aa23.92■■□□□ 1.42
CLIP1-211ENST00000539080 KCNJ4P48050 445 aa23.92■■□□□ 1.42
CLIP1-211ENST00000539080 HIRAP54198 1017 aaPredicted RBP23.92■■□□□ 1.42
CLIP1-211ENST00000539080 RSBN1LQ6PCB5 846 aaPredicted RBP23.92■■□□□ 1.42
CLIP1-211ENST00000539080 LDHAL6AQ6ZMR3 332 aa23.92■■□□□ 1.42
CLIP1-211ENST00000539080 USP17L1Q7RTZ2 530 aa23.92■■□□□ 1.42
CLIP1-211ENST00000539080 TRPM4Q8TD43 1214 aa23.92■■□□□ 1.42
CLIP1-211ENST00000539080 API5Q9BZZ5 524 aaKnown RBP23.92■■□□□ 1.42
CLIP1-211ENST00000539080 USP44Q9H0E7 712 aa23.92■■□□□ 1.42
CLIP1-211ENST00000539080 NOB1Q9ULX3 412 aaKnown RBP23.92■■□□□ 1.42
CLIP1-211ENST00000539080 KIF16BQ96L93 1317 aa23.91■■□□□ 1.42
CLIP1-211ENST00000539080 HNRNPUQ00839 825 aaKnown RBP eCLIP23.91■■□□□ 1.42
CLIP1-211ENST00000539080 C15orf52Q6ZUT6 534 aaKnown RBP23.91■■□□□ 1.42
CLIP1-211ENST00000539080 BICC1Q9H694 974 aaKnown RBP23.91■■□□□ 1.42
CLIP1-211ENST00000539080 SHTN1A0MZ66 631 aa23.9■■□□□ 1.42
CLIP1-211ENST00000539080 ARHGAP45Q92619 1136 aa23.9■■□□□ 1.42
CLIP1-211ENST00000539080 ZNF594Q96JF6 807 aaPredicted RBP23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms