RNA–Protein interactions for RNA: ENST00000538280.1

DDB1-211, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 227 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-211ENST00000538280 RBM8AQ9Y5S9 174 aaKnown RBP11.11□□□□□ -0.63
DDB1-211ENST00000538280 FPGT-TNNI3KV9GXZ4 949 aa11.11□□□□□ -0.63
DDB1-211ENST00000538280 WDR33Q9C0J8 1336 aaKnown RBP11.1□□□□□ -0.63
DDB1-211ENST00000538280 BRCA1P38398 1863 aaKnown RBP11.1□□□□□ -0.63
DDB1-211ENST00000538280 A0A087WZG4 1122 aa11.1□□□□□ -0.63
DDB1-211ENST00000538280 PRPF40AO75400 957 aaKnown RBP11.1□□□□□ -0.63
DDB1-211ENST00000538280 ZSCAN23Q3MJ62 389 aa11.1□□□□□ -0.63
DDB1-211ENST00000538280 TSGA10IPQ3SY00 556 aa11.1□□□□□ -0.63
DDB1-211ENST00000538280 CREB3L3Q68CJ9 461 aa11.1□□□□□ -0.63
DDB1-211ENST00000538280 UBE3BQ7Z3V4 1068 aa11.1□□□□□ -0.63
DDB1-211ENST00000538280 KLHDC4Q8TBB5 520 aa11.1□□□□□ -0.63
DDB1-211ENST00000538280 FAM227BQ96M60 508 aa11.1□□□□□ -0.63
DDB1-211ENST00000538280 DBNLQ9UJU6 430 aaKnown RBP11.1□□□□□ -0.63
DDB1-211ENST00000538280 ANKRD36CQ5JPF3 1778 aa11.1□□□□□ -0.63
DDB1-211ENST00000538280 ZNF609O15014 1411 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 C4AP0C0L4 1744 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 A0A0D9SFI3 127 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 PIP4K2AP48426 406 aaPredicted RBP11.09□□□□□ -0.63
DDB1-211ENST00000538280 ST3GAL1Q11201 340 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 TFCP2Q12800 502 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 ADCK5Q3MIX3 580 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 USPL1Q5W0Q7 1092 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 PRPF40BQ6NWY9 871 aaKnown RBP11.09□□□□□ -0.63
DDB1-211ENST00000538280 PPP1R9BQ96SB3 815 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 SIL1Q9H173 461 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 BOLA2Q9H3K6 86 aa11.09□□□□□ -0.63
DDB1-211ENST00000538280 RTN4Q9NQC3 1192 aaKnown RBP11.09□□□□□ -0.63
DDB1-211ENST00000538280 SH2B1Q9NRF2 756 aaPredicted RBP11.09□□□□□ -0.63
DDB1-211ENST00000538280 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.09□□□□□ -0.63
DDB1-211ENST00000538280 COL5A3P25940 1745 aaPredicted RBP11.09□□□□□ -0.63
DDB1-211ENST00000538280 SLC27A2O14975 620 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 GRIN3BO60391 1043 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 PHF14O94880 888 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 LARGE1O95461 756 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 CASTP20810 708 aaKnown RBP11.08□□□□□ -0.64
DDB1-211ENST00000538280 CAVIN1Q6NZI2 390 aaKnown RBP11.08□□□□□ -0.64
DDB1-211ENST00000538280 TTLL7Q6ZT98 887 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 NOL8Q76FK4 1167 aaKnown RBP11.08□□□□□ -0.64
DDB1-211ENST00000538280 CCDC191Q8NCU4 936 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 JAKMIP1Q96N16 626 aaKnown RBP11.08□□□□□ -0.64
DDB1-211ENST00000538280 HAUS7Q99871 368 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 FSD1Q9BTV5 496 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 ISCA1Q9BUE6 129 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 RRAGDQ9NQL2 400 aaPredicted RBP11.08□□□□□ -0.64
DDB1-211ENST00000538280 ATG3Q9NT62 314 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 PDRG1Q9NUG6 133 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 CWC25Q9NXE8 425 aaPredicted RBP11.08□□□□□ -0.64
DDB1-211ENST00000538280 HMG20BQ9P0W2 317 aa11.08□□□□□ -0.64
DDB1-211ENST00000538280 ATP5J2-PTCD1G3V325 749 aa11.07□□□□□ -0.64
DDB1-211ENST00000538280 PTCD1O75127 700 aaKnown RBP11.07□□□□□ -0.64
DDB1-211ENST00000538280 CIAO1O76071 339 aa11.07□□□□□ -0.64
DDB1-211ENST00000538280 LMBR1LQ6UX01 489 aa11.07□□□□□ -0.64
DDB1-211ENST00000538280 ATG9AQ7Z3C6 839 aa11.07□□□□□ -0.64
DDB1-211ENST00000538280 CHAMP1Q96JM3 812 aa11.07□□□□□ -0.64
DDB1-211ENST00000538280 TMEM63CQ9P1W3 806 aa11.07□□□□□ -0.64
DDB1-211ENST00000538280 NSFL1CQ9UNZ2 370 aaKnown RBP11.07□□□□□ -0.64
DDB1-211ENST00000538280 CYP46A1Q9Y6A2 500 aa11.07□□□□□ -0.64
DDB1-211ENST00000538280 TAF5LO75529 589 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 ZSCAN22P10073 491 aaPredicted RBP11.06□□□□□ -0.64
DDB1-211ENST00000538280 CPA1P15085 419 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 ZKSCAN1P17029 563 aaPredicted RBP11.06□□□□□ -0.64
DDB1-211ENST00000538280 PSMA5P28066 241 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 CCDC173Q0VFZ6 552 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 TRIM28Q13263 835 aaKnown RBP11.06□□□□□ -0.64
DDB1-211ENST00000538280 LRSAM1Q6UWE0 723 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 VSIG10Q8N0Z9 540 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 LINC00116Q8NCU8 138 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 JARID2Q92833 1246 aaPredicted RBP11.06□□□□□ -0.64
DDB1-211ENST00000538280 DBNDD2Q9BQY9 259 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 GPBP1L1Q9HC44 474 aaPredicted RBP11.06□□□□□ -0.64
DDB1-211ENST00000538280 CD2APQ9Y5K6 639 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 LAMA4Q16363 1823 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 SH3TC1Q8TE82 1336 aa11.06□□□□□ -0.64
DDB1-211ENST00000538280 STX6O43752 255 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 F13A1P00488 732 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 A1BGP04217 495 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 PDIA4P13667 645 aaKnown RBP11.05□□□□□ -0.64
DDB1-211ENST00000538280 SYT1P21579 422 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 RPS6KB1P23443 525 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 IL15P40933 162 aaPredicted RBP11.05□□□□□ -0.64
DDB1-211ENST00000538280 RNF20Q5VTR2 975 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 ZNF589Q86UQ0 364 aaPredicted RBP11.05□□□□□ -0.64
DDB1-211ENST00000538280 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.05□□□□□ -0.64
DDB1-211ENST00000538280 PIGBQ92521 554 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 WDR90Q96KV7 1748 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 PLA2G12BQ9BX93 195 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 RBM27Q9P2N5 1060 aaKnown RBP11.05□□□□□ -0.64
DDB1-211ENST00000538280 FBXO3Q9UK99 471 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 SMC3Q9UQE7 1217 aa11.05□□□□□ -0.64
DDB1-211ENST00000538280 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.04□□□□□ -0.64
DDB1-211ENST00000538280 EYA2O00167 538 aa11.04□□□□□ -0.64
DDB1-211ENST00000538280 KIF3CO14782 793 aa11.04□□□□□ -0.64
DDB1-211ENST00000538280 HSPA6P17066 643 aa11.04□□□□□ -0.64
DDB1-211ENST00000538280 CLCN1P35523 988 aa11.04□□□□□ -0.64
DDB1-211ENST00000538280 NASPP49321 788 aaPredicted RBP11.04□□□□□ -0.64
DDB1-211ENST00000538280 TCIRG1Q13488 830 aa11.04□□□□□ -0.64
DDB1-211ENST00000538280 ITPK1Q13572 414 aa11.04□□□□□ -0.64
DDB1-211ENST00000538280 ANKRD1Q15327 319 aa11.04□□□□□ -0.64
DDB1-211ENST00000538280 ME3Q16798 604 aa11.04□□□□□ -0.64
DDB1-211ENST00000538280 FOXD4L5Q5VV16 416 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms