RNA–Protein interactions for RNA: ENST00000530886.5

CSDE1-214, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 3,459 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-214ENST00000530886 POTEB2H3BUK9 544 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 IRF6O14896 467 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 GJB2P29033 226 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 AK2P54819 239 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 GNAI1P63096 354 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 VPS53Q5VIR6 699 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 CKAP2LQ8IYA6 745 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 PARD6BQ9BYG5 372 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 UPF3BQ9BZI7 483 aaKnown RBP9.44□□□□□ -0.9
CSDE1-214ENST00000530886 AKAP2Q9Y2D5 859 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 NRDCO43847 1150 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 PRKAR2BP31323 418 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 TXLNAP40222 546 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 IRX1P78414 480 aaPredicted RBP9.44□□□□□ -0.9
CSDE1-214ENST00000530886 NBPF9Q3BBW0 867 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 TMEM132EQ6IEE7 984 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 KCNV1Q6PIU1 500 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 HDXQ7Z353 690 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 MIEF2Q96C03 454 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 GNL3LQ9NVN8 582 aaKnown RBP9.44□□□□□ -0.9
CSDE1-214ENST00000530886 ERLIN2O94905 339 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.44□□□□□ -0.9
CSDE1-214ENST00000530886 AFAP1Q8N556 730 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 KAT2BQ92831 832 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 FAXDC2Q96IV6 333 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 BPIFA3Q9BQP9 254 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 CARD6Q9BX69 1037 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 LSG1Q9H089 658 aaKnown RBP9.44□□□□□ -0.9
CSDE1-214ENST00000530886 ANO2Q9NQ90 1003 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 HYPKQ9NX55 129 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 MRFAP1Q9Y605 127 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 SPATA31D1Q6ZQQ2 1576 aa9.44□□□□□ -0.9
CSDE1-214ENST00000530886 ARHGEF10O15013 1369 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 RPGRIP1LQ68CZ1 1315 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 BEND6Q5SZJ8 279 aaPredicted RBP9.43□□□□□ -0.9
CSDE1-214ENST00000530886 CCDC30Q5VVM6 783 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 ARMCX5Q6P1M9 558 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 NOL8Q76FK4 1167 aaKnown RBP9.43□□□□□ -0.9
CSDE1-214ENST00000530886 MICALL1Q8N3F8 863 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 VPS18Q9P253 973 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 SNX14Q9Y5W7 946 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 RASEFQ8IZ41 740 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 PRPF38AQ8NAV1 312 aaKnown RBP9.43□□□□□ -0.9
CSDE1-214ENST00000530886 CABP2Q9NPB3 220 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 HMMRO75330 724 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 POTEDQ86YR6 584 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 MSANTD4Q8NCY6 345 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 GOLGA1Q92805 767 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 MCM8Q9UJA3 840 aa9.43□□□□□ -0.9
CSDE1-214ENST00000530886 SHOX2O60902 331 aaPredicted RBP9.42□□□□□ -0.9
CSDE1-214ENST00000530886 PDCP20941 246 aa9.42□□□□□ -0.9
CSDE1-214ENST00000530886 TMED8Q6PL24 325 aaPredicted RBP9.42□□□□□ -0.9
CSDE1-214ENST00000530886 C11orf57Q6ZUT1 292 aaPredicted RBP9.42□□□□□ -0.9
CSDE1-214ENST00000530886 TM6SF1Q9BZW5 370 aa9.42□□□□□ -0.9
CSDE1-214ENST00000530886 PXDNLA1KZ92 1463 aa9.42□□□□□ -0.9
CSDE1-214ENST00000530886 GOLGA6L9A6NEM1 432 aa9.42□□□□□ -0.9
CSDE1-214ENST00000530886 TSHZ3Q63HK5 1081 aa9.42□□□□□ -0.9
CSDE1-214ENST00000530886 LEO1Q8WVC0 666 aaPredicted RBP9.42□□□□□ -0.9
CSDE1-214ENST00000530886 DDX11Q96FC9 970 aa9.42□□□□□ -0.9
CSDE1-214ENST00000530886 TOPAZ1Q8N9V7 1692 aa9.42□□□□□ -0.9
CSDE1-214ENST00000530886 GPTP24298 496 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 MNAT1P51948 309 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 COL9A3Q14050 684 aaPredicted RBP9.41□□□□□ -0.9
CSDE1-214ENST00000530886 NEDD9Q14511 834 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 NBPF6Q5VWK0 638 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 TICAM2Q86XR7 235 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 NBPF4Q96M43 638 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 PDE11AQ9HCR9 933 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 L1RE1Q9UN81 338 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 SH3BP1Q9Y3L3 701 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 CEP170BQ9Y4F5 1589 aaPredicted RBP9.41□□□□□ -0.9
CSDE1-214ENST00000530886 NR1I2O75469 434 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 TUBBP07437 444 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 SFPQP23246 707 aaKnown RBP eCLIP9.41□□□□□ -0.9
CSDE1-214ENST00000530886 MRPL12P52815 198 aaKnown RBP9.41□□□□□ -0.9
CSDE1-214ENST00000530886 HAP1P54257 671 aaPredicted RBP9.41□□□□□ -0.9
CSDE1-214ENST00000530886 TTLL5Q6EMB2 1281 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 XAGE2Q96GT9 111 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 SSR1P43307 286 aaKnown RBP9.41□□□□□ -0.9
CSDE1-214ENST00000530886 PPP2R3AQ06190 1150 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 EFCAB2Q5VUJ9 269 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 PI4K2BQ8TCG2 481 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 VIPAS39Q9H9C1 493 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 ANO10Q9NW15 660 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 PPP6R1Q9UPN7 881 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 NEDD4P46934 1319 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 CPS1P31327 1500 aa9.41□□□□□ -0.9
CSDE1-214ENST00000530886 URI1O94763 535 aaPredicted RBP9.4□□□□□ -0.9
CSDE1-214ENST00000530886 ELF1P32519 619 aa9.4□□□□□ -0.9
CSDE1-214ENST00000530886 AARSP49588 968 aaKnown RBP eCLIP9.4□□□□□ -0.9
CSDE1-214ENST00000530886 INHBEP58166 350 aa9.4□□□□□ -0.9
CSDE1-214ENST00000530886 NUTM1Q86Y26 1132 aa9.4□□□□□ -0.9
CSDE1-214ENST00000530886 SPATA32Q96LK8 384 aa9.4□□□□□ -0.9
CSDE1-214ENST00000530886 ALKQ9UM73 1620 aa9.4□□□□□ -0.9
CSDE1-214ENST00000530886 JCADQ9P266 1359 aa9.4□□□□□ -0.9
CSDE1-214ENST00000530886 CHL1O00533 1208 aa9.4□□□□□ -0.9
CSDE1-214ENST00000530886 GCFC2P16383 781 aaKnown RBP9.4□□□□□ -0.9
CSDE1-214ENST00000530886 CRYMQ14894 314 aa9.4□□□□□ -0.9
CSDE1-214ENST00000530886 PPP2R5AQ15172 486 aa9.4□□□□□ -0.9
CSDE1-214ENST00000530886 GBP6Q6ZN66 633 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms