RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.71■□□□□ 0.43
ECHDC1-220ENST00000528402 CAMTA2O94983 1202 aa17.7■□□□□ 0.42
ECHDC1-220ENST00000528402 CASTP20810 708 aaKnown RBP17.7■□□□□ 0.42
ECHDC1-220ENST00000528402 FAM98CQ17RN3 349 aaKnown RBP17.7■□□□□ 0.42
ECHDC1-220ENST00000528402 RUFY3Q7L099 469 aa17.7■□□□□ 0.42
ECHDC1-220ENST00000528402 PDRG1Q9NUG6 133 aa17.7■□□□□ 0.42
ECHDC1-220ENST00000528402 A0A0G2JS52 829 aa17.69■□□□□ 0.42
ECHDC1-220ENST00000528402 SLC27A2O14975 620 aa17.69■□□□□ 0.42
ECHDC1-220ENST00000528402 ITPK1Q13572 414 aa17.69■□□□□ 0.42
ECHDC1-220ENST00000528402 METTL24Q5JXM2 366 aa17.69■□□□□ 0.42
ECHDC1-220ENST00000528402 TTC39AQ5SRH9 613 aa17.69■□□□□ 0.42
ECHDC1-220ENST00000528402 XAGE2Q96GT9 111 aa17.69■□□□□ 0.42
ECHDC1-220ENST00000528402 JAKMIP1Q96N16 626 aaKnown RBP17.69■□□□□ 0.42
ECHDC1-220ENST00000528402 MROH5Q6ZUA9 1318 aa17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 COL5A3P25940 1745 aaPredicted RBP17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 BAG4O95429 457 aaKnown RBP17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 RC3H1Q5TC82 1133 aaKnown RBP17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 ZGPATQ8N5A5 531 aaKnown RBP17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 DSCC1Q9BVC3 393 aa17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 CNNM1Q9NRU3 951 aa17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 USP21Q9UK80 565 aa17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 UBN2Q6ZU65 1347 aa17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 CNTNAP4Q9C0A0 1308 aa17.68■□□□□ 0.42
ECHDC1-220ENST00000528402 RTL9Q8NET4 1388 aa17.67■□□□□ 0.42
ECHDC1-220ENST00000528402 GOLIM4O00461 696 aa17.67■□□□□ 0.42
ECHDC1-220ENST00000528402 RNF113AO15541 343 aaKnown RBP17.67■□□□□ 0.42
ECHDC1-220ENST00000528402 AK2P54819 239 aa17.67■□□□□ 0.42
ECHDC1-220ENST00000528402 ATP2B3Q16720 1220 aa17.67■□□□□ 0.42
ECHDC1-220ENST00000528402 ZMYM1Q5SVZ6 1142 aa17.67■□□□□ 0.42
ECHDC1-220ENST00000528402 GREM2Q9H772 168 aa17.67■□□□□ 0.42
ECHDC1-220ENST00000528402 ISY1Q9ULR0 285 aaKnown RBP17.67■□□□□ 0.42
ECHDC1-220ENST00000528402 MYH14Q7Z406 1995 aaKnown RBP17.67■□□□□ 0.42
ECHDC1-220ENST00000528402 RPAP1Q9BWH6 1393 aaPredicted RBP17.66■□□□□ 0.42
ECHDC1-220ENST00000528402 TTF1Q15361 905 aaPredicted RBP17.66■□□□□ 0.42
ECHDC1-220ENST00000528402 SUSD4Q5VX71 490 aa17.66■□□□□ 0.42
ECHDC1-220ENST00000528402 ZSCAN25Q6NSZ9 544 aa17.66■□□□□ 0.42
ECHDC1-220ENST00000528402 BLOC1S2Q6QNY1 142 aa17.66■□□□□ 0.42
ECHDC1-220ENST00000528402 DDX46Q7L014 1031 aaKnown RBP17.66■□□□□ 0.42
ECHDC1-220ENST00000528402 PDE8BO95263 885 aa17.65■□□□□ 0.42
ECHDC1-220ENST00000528402 HMGB1P09429 215 aaKnown RBP17.65■□□□□ 0.42
ECHDC1-220ENST00000528402 UQCRFS1P1P0C7P4 283 aa17.65■□□□□ 0.42
ECHDC1-220ENST00000528402 CCDC152Q4G0S7 254 aa17.65■□□□□ 0.42
ECHDC1-220ENST00000528402 EDC3Q96F86 508 aaKnown RBP17.65■□□□□ 0.42
ECHDC1-220ENST00000528402 BRD1O95696 1058 aa17.64■□□□□ 0.42
ECHDC1-220ENST00000528402 L1TD1Q5T7N2 865 aaKnown RBP17.64■□□□□ 0.42
ECHDC1-220ENST00000528402 ZNF589Q86UQ0 364 aaPredicted RBP17.64■□□□□ 0.42
ECHDC1-220ENST00000528402 WDR33Q9C0J8 1336 aaKnown RBP17.64■□□□□ 0.41
ECHDC1-220ENST00000528402 LAMB2P55268 1798 aa17.64■□□□□ 0.41
ECHDC1-220ENST00000528402 BCORQ6W2J9 1755 aa17.64■□□□□ 0.41
ECHDC1-220ENST00000528402 KCNQ2O43526 872 aa17.64■□□□□ 0.41
ECHDC1-220ENST00000528402 ADCK5Q3MIX3 580 aa17.64■□□□□ 0.41
ECHDC1-220ENST00000528402 SYNE4Q8N205 404 aa17.64■□□□□ 0.41
ECHDC1-220ENST00000528402 VGLL2Q8N8G2 317 aa17.64■□□□□ 0.41
ECHDC1-220ENST00000528402 LPIN2Q92539 896 aa17.64■□□□□ 0.41
ECHDC1-220ENST00000528402 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.64■□□□□ 0.415e-9■■■■■ 28.9
ECHDC1-220ENST00000528402 NIP7Q9Y221 180 aaKnown RBP eCLIP17.64■□□□□ 0.41
ECHDC1-220ENST00000528402 THSD7AQ9UPZ6 1657 aa17.63■□□□□ 0.41
ECHDC1-220ENST00000528402 RIC1Q4ADV7 1423 aa17.63■□□□□ 0.41
ECHDC1-220ENST00000528402 RPS6KB1P23443 525 aa17.63■□□□□ 0.41
ECHDC1-220ENST00000528402 PUM3Q15397 648 aaKnown RBP17.63■□□□□ 0.41
ECHDC1-220ENST00000528402 CHMP4CQ96CF2 233 aa17.63■□□□□ 0.41
ECHDC1-220ENST00000528402 CCDC85AQ96PX6 553 aaPredicted RBP17.63■□□□□ 0.41
ECHDC1-220ENST00000528402 MPHOSPH8Q99549 860 aa17.63■□□□□ 0.41
ECHDC1-220ENST00000528402 CTNNA3Q9UI47 895 aa17.63■□□□□ 0.41
ECHDC1-220ENST00000528402 NTSR2O95665 410 aa17.62■□□□□ 0.41
ECHDC1-220ENST00000528402 HMGB2P26583 209 aaKnown RBP17.62■□□□□ 0.41
ECHDC1-220ENST00000528402 IGHMBP2P38935 993 aaKnown RBP17.62■□□□□ 0.41
ECHDC1-220ENST00000528402 FKBP4Q02790 459 aaKnown RBP eCLIP17.62■□□□□ 0.41
ECHDC1-220ENST00000528402 CERKQ8TCT0 537 aa17.62■□□□□ 0.41
ECHDC1-220ENST00000528402 ZDHHC9Q9Y397 364 aa17.62■□□□□ 0.41
ECHDC1-220ENST00000528402 LRP5O75197 1615 aa17.61■□□□□ 0.41
ECHDC1-220ENST00000528402 ONECUT3O60422 494 aaPredicted RBP17.61■□□□□ 0.41
ECHDC1-220ENST00000528402 RPS6KA4O75676 772 aa17.61■□□□□ 0.41
ECHDC1-220ENST00000528402 SLC5A1P13866 664 aa17.61■□□□□ 0.41
ECHDC1-220ENST00000528402 NEK1Q96PY6 1258 aa17.61■□□□□ 0.41
ECHDC1-220ENST00000528402 SMC3Q9UQE7 1217 aa17.61■□□□□ 0.41
ECHDC1-220ENST00000528402 NHSQ6T4R5 1651 aa17.61■□□□□ 0.41
ECHDC1-220ENST00000528402 FGFR2P21802 821 aa17.6■□□□□ 0.41
ECHDC1-220ENST00000528402 ADORA1P30542 326 aa17.6■□□□□ 0.41
ECHDC1-220ENST00000528402 KLHL40Q2TBA0 621 aa17.6■□□□□ 0.41
ECHDC1-220ENST00000528402 MEX3CQ5U5Q3 659 aaKnown RBP17.6■□□□□ 0.41
ECHDC1-220ENST00000528402 NOL8Q76FK4 1167 aaKnown RBP17.6■□□□□ 0.41
ECHDC1-220ENST00000528402 APPBP2Q92624 585 aa17.6■□□□□ 0.41
ECHDC1-220ENST00000528402 GJD4Q96KN9 370 aaPredicted RBP17.6■□□□□ 0.41
ECHDC1-220ENST00000528402 CDC5LQ99459 802 aaKnown RBP17.6■□□□□ 0.41
ECHDC1-220ENST00000528402 ATP6V1DQ9Y5K8 247 aa17.6■□□□□ 0.41
ECHDC1-220ENST00000528402 ARID4AP29374 1257 aaPredicted RBP17.59■□□□□ 0.41
ECHDC1-220ENST00000528402 SLC10A5Q5PT55 438 aa17.59■□□□□ 0.41
ECHDC1-220ENST00000528402 LINC00116Q8NCU8 138 aa17.59■□□□□ 0.41
ECHDC1-220ENST00000528402 NYXQ9GZU5 481 aa17.59■□□□□ 0.41
ECHDC1-220ENST00000528402 NDUFB9Q9Y6M9 179 aa17.59■□□□□ 0.41
ECHDC1-220ENST00000528402 MYH7P12883 1935 aa17.59■□□□□ 0.41
ECHDC1-220ENST00000528402 DDX60Q8IY21 1712 aaKnown RBP17.58■□□□□ 0.41
ECHDC1-220ENST00000528402 ARAP2Q8WZ64 1704 aa17.58■□□□□ 0.41
ECHDC1-220ENST00000528402 HCLS1P14317 486 aaPredicted RBP17.58■□□□□ 0.41
ECHDC1-220ENST00000528402 SF3B3Q15393 1217 aaKnown RBP17.58■□□□□ 0.41
ECHDC1-220ENST00000528402 MCTP1Q6DN14 999 aa17.58■□□□□ 0.41
ECHDC1-220ENST00000528402 NARFQ9UHQ1 456 aa17.58■□□□□ 0.41
ECHDC1-220ENST00000528402 TRPC5Q9UL62 973 aaPredicted RBP17.58■□□□□ 0.41
ECHDC1-220ENST00000528402 AKAP11Q9UKA4 1901 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms