RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 EIF6P56537 245 aaKnown RBP13.59□□□□□ -0.23
CD44-227ENST00000528086 CHADLQ6NUI6 762 aa13.59□□□□□ -0.23
CD44-227ENST00000528086 SUPT20HQ8NEM7 779 aa13.59□□□□□ -0.23
CD44-227ENST00000528086 DBNDD1Q9H9R9 158 aa13.59□□□□□ -0.23
CD44-227ENST00000528086 PASKQ96RG2 1323 aa13.59□□□□□ -0.23
CD44-227ENST00000528086 ITGA6P23229 1130 aa13.58□□□□□ -0.24
CD44-227ENST00000528086 HIRAP54198 1017 aaPredicted RBP13.58□□□□□ -0.24
CD44-227ENST00000528086 FMR1Q06787 632 aaKnown RBP eCLIP13.58□□□□□ -0.24
CD44-227ENST00000528086 DOK7Q18PE1 504 aa13.58□□□□□ -0.24
CD44-227ENST00000528086 WASHC4Q2M389 1173 aa13.58□□□□□ -0.24
CD44-227ENST00000528086 TXNRD3Q86VQ6 643 aa13.58□□□□□ -0.24
CD44-227ENST00000528086 UTYO14607 1347 aa13.58□□□□□ -0.24
CD44-227ENST00000528086 IRS2Q9Y4H2 1338 aa13.58□□□□□ -0.24
CD44-227ENST00000528086 POLR2AP24928 1970 aaKnown RBP13.58□□□□□ -0.24
CD44-227ENST00000528086 IQCA1LA6NCM1 817 aa13.57□□□□□ -0.24
CD44-227ENST00000528086 C6orf229H3BNL8 230 aa13.57□□□□□ -0.24
CD44-227ENST00000528086 SNAP23O00161 211 aa13.57□□□□□ -0.24
CD44-227ENST00000528086 GRM8O00222 908 aa13.57□□□□□ -0.24
CD44-227ENST00000528086 NBPF7P0C2Y1 421 aaPredicted RBP13.57□□□□□ -0.24
CD44-227ENST00000528086 KLRK1P26718 216 aa13.57□□□□□ -0.24
CD44-227ENST00000528086 GMPSP49915 693 aaPredicted RBP13.57□□□□□ -0.24
CD44-227ENST00000528086 LDHDQ86WU2 507 aa13.57□□□□□ -0.24
CD44-227ENST00000528086 ANKRD18AQ8IVF6 992 aa13.57□□□□□ -0.24
CD44-227ENST00000528086 SUCLG2Q96I99 432 aa13.57□□□□□ -0.24
CD44-227ENST00000528086 BSDC1Q9NW68 430 aaPredicted RBP13.57□□□□□ -0.24
CD44-227ENST00000528086 GPRC5DQ9NZD1 345 aa13.57□□□□□ -0.24
CD44-227ENST00000528086 ZBTB12Q9Y330 459 aaPredicted RBP13.57□□□□□ -0.24
CD44-227ENST00000528086 PSMD14O00487 310 aa13.56□□□□□ -0.24
CD44-227ENST00000528086 ECE2O60344 883 aa13.56□□□□□ -0.24
CD44-227ENST00000528086 ALDH1L1O75891 902 aa13.56□□□□□ -0.24
CD44-227ENST00000528086 UFL1O94874 794 aa13.56□□□□□ -0.24
CD44-227ENST00000528086 EGFRP00533 1210 aa13.56□□□□□ -0.24
CD44-227ENST00000528086 HSP90B1P14625 803 aaKnown RBP13.56□□□□□ -0.24
CD44-227ENST00000528086 MAP1SQ66K74 1059 aaPredicted RBP13.56□□□□□ -0.24
CD44-227ENST00000528086 CIAPIN1Q6FI81 312 aa13.56□□□□□ -0.24
CD44-227ENST00000528086 SLC4A10Q6U841 1118 aa13.56□□□□□ -0.24
CD44-227ENST00000528086 EAPPQ56P03 285 aaPredicted RBP13.55□□□□□ -0.24
CD44-227ENST00000528086 LMBR1LQ6UX01 489 aa13.55□□□□□ -0.24
CD44-227ENST00000528086 ANKRD44Q8N8A2 993 aa13.55□□□□□ -0.24
CD44-227ENST00000528086 TRPM4Q8TD43 1214 aa13.55□□□□□ -0.24
CD44-227ENST00000528086 ZNF594Q96JF6 807 aaPredicted RBP13.55□□□□□ -0.24
CD44-227ENST00000528086 SRCIN1Q9C0H9 1055 aa13.55□□□□□ -0.24
CD44-227ENST00000528086 TMX4Q9H1E5 349 aaPredicted RBP13.55□□□□□ -0.24
CD44-227ENST00000528086 GGA1Q9UJY5 639 aa13.55□□□□□ -0.24
CD44-227ENST00000528086 XDHP47989 1333 aa13.55□□□□□ -0.24
CD44-227ENST00000528086 BRPF1P55201 1214 aaPredicted RBP13.54□□□□□ -0.24
CD44-227ENST00000528086 ALDH1L2Q3SY69 923 aa13.54□□□□□ -0.24
CD44-227ENST00000528086 CDC5LQ99459 802 aaKnown RBP13.54□□□□□ -0.24
CD44-227ENST00000528086 USP44Q9H0E7 712 aa13.54□□□□□ -0.24
CD44-227ENST00000528086 ANKIB1Q9P2G1 1089 aa13.54□□□□□ -0.24
CD44-227ENST00000528086 VIL1P09327 827 aaKnown RBP13.53□□□□□ -0.24
CD44-227ENST00000528086 CCT4P50991 539 aaKnown RBP13.53□□□□□ -0.24
CD44-227ENST00000528086 RARSP54136 660 aaKnown RBP13.53□□□□□ -0.24
CD44-227ENST00000528086 GMLQ99445 158 aa13.53□□□□□ -0.24
CD44-227ENST00000528086 PGAP2Q9UHJ9 254 aa13.53□□□□□ -0.24
CD44-227ENST00000528086 TNNQ9UQP3 1299 aa13.53□□□□□ -0.24
CD44-227ENST00000528086 PTPRCP08575 1304 aa13.53□□□□□ -0.24
CD44-227ENST00000528086 TRPM7Q96QT4 1865 aa13.53□□□□□ -0.24
CD44-227ENST00000528086 ATP2B4P23634 1241 aa13.52□□□□□ -0.25
CD44-227ENST00000528086 CHRNDQ07001 517 aa13.52□□□□□ -0.25
CD44-227ENST00000528086 RABL6Q3YEC7 729 aaPredicted RBP13.52□□□□□ -0.25
CD44-227ENST00000528086 DLK2Q6UY11 383 aa13.52□□□□□ -0.25
CD44-227ENST00000528086 CNTROBQ8N137 903 aa13.52□□□□□ -0.25
CD44-227ENST00000528086 HELBQ8NG08 1087 aaPredicted RBP13.52□□□□□ -0.25
CD44-227ENST00000528086 KLRG1Q96E93 195 aa13.52□□□□□ -0.25
CD44-227ENST00000528086 PUS3Q9BZE2 481 aaKnown RBP13.52□□□□□ -0.25
CD44-227ENST00000528086 ZC3H12CQ9C0D7 883 aaKnown RBP13.52□□□□□ -0.25
CD44-227ENST00000528086 ADARB2Q9NS39 739 aaKnown RBP13.52□□□□□ -0.25
CD44-227ENST00000528086 SMC4Q9NTJ3 1288 aa13.52□□□□□ -0.25
CD44-227ENST00000528086 NOB1Q9ULX3 412 aaKnown RBP13.52□□□□□ -0.25
CD44-227ENST00000528086 ZNF609O15014 1411 aa13.51□□□□□ -0.25
CD44-227ENST00000528086 MED23Q9ULK4 1368 aa13.51□□□□□ -0.25
CD44-227ENST00000528086 TRAF5O00463 557 aa13.51□□□□□ -0.25
CD44-227ENST00000528086 TAF5LO75529 589 aa13.51□□□□□ -0.25
CD44-227ENST00000528086 USP50Q70EL3 339 aaPredicted RBP13.51□□□□□ -0.25
CD44-227ENST00000528086 SAMD7Q7Z3H4 446 aa13.51□□□□□ -0.25
CD44-227ENST00000528086 PNMA8AQ86V59 439 aaPredicted RBP13.51□□□□□ -0.25
CD44-227ENST00000528086 MICALL2Q8IY33 904 aa13.51□□□□□ -0.25
CD44-227ENST00000528086 JMYQ8N9B5 988 aa13.51□□□□□ -0.25
CD44-227ENST00000528086 EYA3Q99504 573 aa13.51□□□□□ -0.25
CD44-227ENST00000528086 MXD3Q9BW11 206 aa13.51□□□□□ -0.25
CD44-227ENST00000528086 BICC1Q9H694 974 aaKnown RBP13.51□□□□□ -0.25
CD44-227ENST00000528086 C9orf78Q9NZ63 289 aaPredicted RBP13.51□□□□□ -0.25
CD44-227ENST00000528086 CNOT7Q9UIV1 285 aaKnown RBP13.51□□□□□ -0.25
CD44-227ENST00000528086 ASTN2O75129 1339 aaPredicted RBP13.5□□□□□ -0.25
CD44-227ENST00000528086 ANKRD18BA2A2Z9 1011 aa13.5□□□□□ -0.25
CD44-227ENST00000528086 TNIP1Q15025 636 aa13.5□□□□□ -0.25
CD44-227ENST00000528086 CST9Q5W186 159 aa13.5□□□□□ -0.25
CD44-227ENST00000528086 DPF2Q92785 391 aa13.5□□□□□ -0.25
CD44-227ENST00000528086 CLEC11AQ9Y240 323 aa13.5□□□□□ -0.25
CD44-227ENST00000528086 ZNF804BA4D1E1 1349 aa13.49□□□□□ -0.25
CD44-227ENST00000528086 BCAR3O75815 825 aa13.49□□□□□ -0.25
CD44-227ENST00000528086 CT47B1P0C2W7 299 aaPredicted RBP13.49□□□□□ -0.25
CD44-227ENST00000528086 LMOD1P29536 600 aaPredicted RBP13.49□□□□□ -0.25
CD44-227ENST00000528086 IGHMBP2P38935 993 aaKnown RBP13.49□□□□□ -0.25
CD44-227ENST00000528086 RFX5P48382 616 aaPredicted RBP13.49□□□□□ -0.25
CD44-227ENST00000528086 IFIT5Q13325 482 aaKnown RBP13.49□□□□□ -0.25
CD44-227ENST00000528086 LEMD3Q9Y2U8 911 aa13.49□□□□□ -0.25
CD44-227ENST00000528086 RIPOR2Q9Y4F9 1068 aa13.49□□□□□ -0.25
CD44-227ENST00000528086 ZNF280AP59817 542 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms