RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SHTN1A0MZ66 631 aa12.93□□□□□ -0.34
VPS28-204ENST00000526054 H7C1D1 291 aa12.93□□□□□ -0.34
VPS28-204ENST00000526054 RIMBP2O15034 1052 aa12.93□□□□□ -0.34
VPS28-204ENST00000526054 HSPA8P11142 646 aaKnown RBP12.93□□□□□ -0.34
VPS28-204ENST00000526054 HSP90B1P14625 803 aaKnown RBP12.93□□□□□ -0.34
VPS28-204ENST00000526054 GPSM2P81274 684 aa12.93□□□□□ -0.34
VPS28-204ENST00000526054 TRMT2AQ8IZ69 625 aaKnown RBP12.93□□□□□ -0.34
VPS28-204ENST00000526054 ZBTB38Q8NAP3 1195 aaPredicted RBP12.93□□□□□ -0.34
VPS28-204ENST00000526054 ZC3H15Q8WU90 426 aaKnown RBP12.93□□□□□ -0.34
VPS28-204ENST00000526054 EYA3Q99504 573 aa12.93□□□□□ -0.34
VPS28-204ENST00000526054 MYD88Q99836 296 aa12.93□□□□□ -0.34
VPS28-204ENST00000526054 BEGAINQ9BUH8 593 aa12.93□□□□□ -0.34
VPS28-204ENST00000526054 PHAXQ9H814 394 aaKnown RBP12.93□□□□□ -0.34
VPS28-204ENST00000526054 ZNF408Q9H9D4 720 aa12.93□□□□□ -0.34
VPS28-204ENST00000526054 CNOT7Q9UIV1 285 aaKnown RBP12.93□□□□□ -0.34
VPS28-204ENST00000526054 SPEF2Q9C093 1822 aa12.92□□□□□ -0.34
VPS28-204ENST00000526054 SCN9AQ15858 1988 aa12.92□□□□□ -0.34
VPS28-204ENST00000526054 MYH3P11055 1940 aa12.92□□□□□ -0.34
VPS28-204ENST00000526054 PSMD14O00487 310 aa12.92□□□□□ -0.34
VPS28-204ENST00000526054 ECE2O60344 883 aa12.92□□□□□ -0.34
VPS28-204ENST00000526054 DDX58O95786 925 aaKnown RBP12.92□□□□□ -0.34
VPS28-204ENST00000526054 HIRAP54198 1017 aaPredicted RBP12.92□□□□□ -0.34
VPS28-204ENST00000526054 SAPCD2Q86UD0 394 aa12.92□□□□□ -0.34
VPS28-204ENST00000526054 GPR101Q96P66 508 aaPredicted RBP12.92□□□□□ -0.34
VPS28-204ENST00000526054 POLLQ9UGP5 575 aa12.92□□□□□ -0.34
VPS28-204ENST00000526054 PGAP2Q9UHJ9 254 aa12.92□□□□□ -0.34
VPS28-204ENST00000526054 ZBTB12Q9Y330 459 aaPredicted RBP12.92□□□□□ -0.34
VPS28-204ENST00000526054 PSME4Q14997 1843 aa12.92□□□□□ -0.34
VPS28-204ENST00000526054 SLC4A2P04920 1241 aa12.91□□□□□ -0.34
VPS28-204ENST00000526054 CT47B1P0C2W7 299 aaPredicted RBP12.91□□□□□ -0.34
VPS28-204ENST00000526054 RPS8P62241 208 aaKnown RBP12.91□□□□□ -0.34
VPS28-204ENST00000526054 CDC37L1Q7L3B6 337 aa12.91□□□□□ -0.34
VPS28-204ENST00000526054 TBC1D16Q8TBP0 767 aa12.91□□□□□ -0.34
VPS28-204ENST00000526054 RTL9Q8NET4 1388 aa12.91□□□□□ -0.34
VPS28-204ENST00000526054 UFL1O94874 794 aa12.9□□□□□ -0.34
VPS28-204ENST00000526054 PCCAP05165 728 aaPredicted RBP12.9□□□□□ -0.34
VPS28-204ENST00000526054 RPS12P25398 132 aaKnown RBP12.9□□□□□ -0.34
VPS28-204ENST00000526054 DOK7Q18PE1 504 aa12.9□□□□□ -0.34
VPS28-204ENST00000526054 CCDC152Q4G0S7 254 aa12.9□□□□□ -0.34
VPS28-204ENST00000526054 CCDC191Q8NCU4 936 aa12.9□□□□□ -0.34
VPS28-204ENST00000526054 DPF2Q92785 391 aa12.9□□□□□ -0.34
VPS28-204ENST00000526054 SEC31BQ9NQW1 1179 aa12.9□□□□□ -0.34
VPS28-204ENST00000526054 CWC25Q9NXE8 425 aaPredicted RBP12.9□□□□□ -0.34
VPS28-204ENST00000526054 ANKIB1Q9P2G1 1089 aa12.9□□□□□ -0.34
VPS28-204ENST00000526054 PDE8AO60658 829 aa12.89□□□□□ -0.35
VPS28-204ENST00000526054 AOC2O75106 756 aa12.89□□□□□ -0.35
VPS28-204ENST00000526054 MAP2K2P36507 400 aa12.89□□□□□ -0.35
VPS28-204ENST00000526054 TBC1D10BQ4KMP7 808 aaPredicted RBP12.89□□□□□ -0.35
VPS28-204ENST00000526054 SAMD7Q7Z3H4 446 aa12.89□□□□□ -0.35
VPS28-204ENST00000526054 HHIPL1Q96JK4 782 aa12.89□□□□□ -0.35
VPS28-204ENST00000526054 CCDC85AQ96PX6 553 aaPredicted RBP12.89□□□□□ -0.35
VPS28-204ENST00000526054 METTL22Q9BUU2 404 aaPredicted RBP12.89□□□□□ -0.35
VPS28-204ENST00000526054 ZC3H12CQ9C0D7 883 aaKnown RBP12.89□□□□□ -0.35
VPS28-204ENST00000526054 PODXL2Q9NZ53 605 aa12.89□□□□□ -0.35
VPS28-204ENST00000526054 G3V3G9 751 aa12.88□□□□□ -0.35
VPS28-204ENST00000526054 EGFRP00533 1210 aa12.88□□□□□ -0.35
VPS28-204ENST00000526054 FLIIQ13045 1269 aa12.88□□□□□ -0.35
VPS28-204ENST00000526054 DCAF8Q5TAQ9 597 aa12.88□□□□□ -0.35
VPS28-204ENST00000526054 GGA1Q9UJY5 639 aa12.88□□□□□ -0.35
VPS28-204ENST00000526054 MAP3K2Q9Y2U5 619 aa12.88□□□□□ -0.35
VPS28-204ENST00000526054 POLR2AP24928 1970 aaKnown RBP12.88□□□□□ -0.35
VPS28-204ENST00000526054 FKBP5Q13451 457 aaPredicted RBP12.87□□□□□ -0.35
VPS28-204ENST00000526054 KIF4BQ2VIQ3 1234 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 ALDH1L2Q3SY69 923 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 KSR2Q6VAB6 950 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 G2E3Q7L622 706 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 KRT26Q7Z3Y9 468 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 USP48Q86UV5 1035 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 ANKRD18AQ8IVF6 992 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 JARID2Q92833 1246 aaPredicted RBP12.87□□□□□ -0.35
VPS28-204ENST00000526054 DCPSQ96C86 337 aaKnown RBP12.87□□□□□ -0.35
VPS28-204ENST00000526054 KCNQ5Q9NR82 932 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 TSKSQ9UJT2 592 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 ZNF609O15014 1411 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 XDHP47989 1333 aa12.87□□□□□ -0.35
VPS28-204ENST00000526054 ADM5C9JUS6 153 aa12.86□□□□□ -0.35
VPS28-204ENST00000526054 CA12O43570 354 aa12.86□□□□□ -0.35
VPS28-204ENST00000526054 BRPF1P55201 1214 aaPredicted RBP12.86□□□□□ -0.35
VPS28-204ENST00000526054 CTSWP56202 376 aa12.86□□□□□ -0.35
VPS28-204ENST00000526054 HUNKP57058 714 aa12.86□□□□□ -0.35
VPS28-204ENST00000526054 NEXNQ0ZGT2 675 aa12.86□□□□□ -0.35
VPS28-204ENST00000526054 RBM26Q5T8P6 1007 aaKnown RBP12.86□□□□□ -0.35
VPS28-204ENST00000526054 PI4KAP2A4QPH2 592 aa12.85□□□□□ -0.35
VPS28-204ENST00000526054 VIL1P09327 827 aaKnown RBP12.85□□□□□ -0.35
VPS28-204ENST00000526054 NOGQ13253 232 aa12.85□□□□□ -0.35
VPS28-204ENST00000526054 DLK2Q6UY11 383 aa12.85□□□□□ -0.35
VPS28-204ENST00000526054 PI4KAP1Q8N8J0 262 aa12.85□□□□□ -0.35
VPS28-204ENST00000526054 SSH1Q8WYL5 1049 aa12.85□□□□□ -0.35
VPS28-204ENST00000526054 ABHD8Q96I13 439 aa12.85□□□□□ -0.35
VPS28-204ENST00000526054 CDC5LQ99459 802 aaKnown RBP12.85□□□□□ -0.35
VPS28-204ENST00000526054 SMC4Q9NTJ3 1288 aa12.85□□□□□ -0.35
VPS28-204ENST00000526054 GGA3Q9NZ52 723 aa12.85□□□□□ -0.35
VPS28-204ENST00000526054 ZNF646O15015 1829 aaPredicted RBP12.84□□□□□ -0.35
VPS28-204ENST00000526054 IGKV5-2P06315 115 aa12.84□□□□□ -0.35
VPS28-204ENST00000526054 SULF1Q8IWU6 871 aa12.84□□□□□ -0.35
VPS28-204ENST00000526054 MRPL50Q8N5N7 158 aaKnown RBP12.84□□□□□ -0.35
VPS28-204ENST00000526054 YTHDC1Q96MU7 727 aaKnown RBP12.84□□□□□ -0.35
VPS28-204ENST00000526054 GBA2Q9HCG7 927 aaPredicted RBP12.84□□□□□ -0.35
VPS28-204ENST00000526054 PTPRCP08575 1304 aa12.84□□□□□ -0.35
VPS28-204ENST00000526054 MED23Q9ULK4 1368 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms