RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 HSP90B1P14625 803 aaKnown RBP13.1□□□□□ -0.31
HDAC9-228ENST00000524023 TYRO3Q06418 890 aa13.1□□□□□ -0.31
HDAC9-228ENST00000524023 BRF1Q92994 677 aa13.1□□□□□ -0.31
HDAC9-228ENST00000524023 MRVI1Q9Y6F6 885 aa13.1□□□□□ -0.31
HDAC9-228ENST00000524023 TMEM94Q12767 1356 aa13.1□□□□□ -0.31
HDAC9-228ENST00000524023 NUP188Q5SRE5 1749 aa13.1□□□□□ -0.31
HDAC9-228ENST00000524023 RBM10P98175 930 aaKnown RBP13.1□□□□□ -0.31
HDAC9-228ENST00000524023 RESTQ13127 1097 aa13.1□□□□□ -0.31
HDAC9-228ENST00000524023 STOX1Q6ZVD7 989 aa13.1□□□□□ -0.31
HDAC9-228ENST00000524023 TNMDQ9H2S6 317 aa13.1□□□□□ -0.31
HDAC9-228ENST00000524023 GPR108Q9NPR9 543 aa13.1□□□□□ -0.31
HDAC9-228ENST00000524023 DDX19AQ9NUU7 478 aaKnown RBP13.1□□□□□ -0.31
HDAC9-228ENST00000524023 CCDC9Q9Y3X0 531 aaKnown RBP13.1□□□□□ -0.31
HDAC9-228ENST00000524023 DCCP43146 1447 aa13.09□□□□□ -0.31
HDAC9-228ENST00000524023 DYNC1I1O14576 645 aa13.09□□□□□ -0.31
HDAC9-228ENST00000524023 SCRN1Q12765 414 aa13.09□□□□□ -0.31
HDAC9-228ENST00000524023 RBM43Q6ZSC3 357 aaKnown RBP13.09□□□□□ -0.31
HDAC9-228ENST00000524023 SMARCC2Q8TAQ2 1214 aa13.09□□□□□ -0.31
HDAC9-228ENST00000524023 NEUROD6Q96NK8 337 aa13.09□□□□□ -0.31
HDAC9-228ENST00000524023 LRRC2Q9BYS8 371 aa13.09□□□□□ -0.31
HDAC9-228ENST00000524023 HELLSQ9NRZ9 838 aa13.09□□□□□ -0.31
HDAC9-228ENST00000524023 PAG1Q9NWQ8 432 aa13.09□□□□□ -0.31
HDAC9-228ENST00000524023 CWC25Q9NXE8 425 aaPredicted RBP13.09□□□□□ -0.31
HDAC9-228ENST00000524023 TJP1Q07157 1748 aa13.09□□□□□ -0.31
HDAC9-228ENST00000524023 GOLIM4O00461 696 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 PFKFB2O60825 505 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 HMGB1P09429 215 aaKnown RBP13.08□□□□□ -0.31
HDAC9-228ENST00000524023 GLIPR1L2Q4G1C9 344 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 DNTTIP2Q5QJE6 756 aaKnown RBP13.08□□□□□ -0.31
HDAC9-228ENST00000524023 TTLL7Q6ZT98 887 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 TICAM2Q86XR7 235 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 CKAP2LQ8IYA6 745 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 PGBD1Q96JS3 809 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 CLSTN2Q9H4D0 955 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 SPTLC3Q9NUV7 552 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 CPDO75976 1380 aa13.08□□□□□ -0.31
HDAC9-228ENST00000524023 H3BQV1 296 aa13.08□□□□□ -0.32
HDAC9-228ENST00000524023 IL15P40933 162 aaPredicted RBP13.08□□□□□ -0.32
HDAC9-228ENST00000524023 TIMM10P62072 90 aa13.08□□□□□ -0.32
HDAC9-228ENST00000524023 IFFO2Q5TF58 517 aa13.08□□□□□ -0.32
HDAC9-228ENST00000524023 DHX32Q7L7V1 743 aaKnown RBP13.08□□□□□ -0.32
HDAC9-228ENST00000524023 C17orf53Q8N3J3 647 aaPredicted RBP13.08□□□□□ -0.32
HDAC9-228ENST00000524023 DDX11Q96FC9 970 aa13.08□□□□□ -0.32
HDAC9-228ENST00000524023 LLPHQ9BRT6 129 aaKnown RBP13.08□□□□□ -0.32
HDAC9-228ENST00000524023 DSCC1Q9BVC3 393 aa13.08□□□□□ -0.32
HDAC9-228ENST00000524023 ZSCAN16Q9H4T2 348 aaPredicted RBP13.08□□□□□ -0.32
HDAC9-228ENST00000524023 FAM13BQ9NYF5 915 aa13.08□□□□□ -0.32
HDAC9-228ENST00000524023 MYH15Q9Y2K3 1946 aa13.08□□□□□ -0.32
HDAC9-228ENST00000524023 STRCP1A6NGW2 1772 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 UBR2Q8IWV8 1755 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 TPM3P06753 285 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 FGD1P98174 961 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 SLFNL1Q499Z3 407 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 ZMYM1Q5SVZ6 1142 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 SPATA31A3Q5VYP0 1347 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 NR1I2O75469 434 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 ANO6Q4KMQ2 910 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 LUZP1Q86V48 1076 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 NSUN7Q8NE18 718 aaKnown RBP13.07□□□□□ -0.32
HDAC9-228ENST00000524023 BICD2Q8TD16 824 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 KCNF1Q9H3M0 494 aa13.07□□□□□ -0.32
HDAC9-228ENST00000524023 GOLGA6L6A8MZA4 724 aa13.06□□□□□ -0.32
HDAC9-228ENST00000524023 EYA2O00167 538 aa13.06□□□□□ -0.32
HDAC9-228ENST00000524023 EXOSC10Q01780 885 aaKnown RBP13.06□□□□□ -0.32
HDAC9-228ENST00000524023 LRRC24Q50LG9 513 aa13.06□□□□□ -0.32
HDAC9-228ENST00000524023 SPC24Q8NBT2 197 aa13.06□□□□□ -0.32
HDAC9-228ENST00000524023 MYRIPQ8NFW9 859 aa13.06□□□□□ -0.32
HDAC9-228ENST00000524023 AGXT2Q9BYV1 514 aa13.06□□□□□ -0.32
HDAC9-228ENST00000524023 CBX8Q9HC52 389 aa13.06□□□□□ -0.32
HDAC9-228ENST00000524023 CFAP45Q9UL16 551 aa13.06□□□□□ -0.32
HDAC9-228ENST00000524023 A1BGP04217 495 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 HSPD1P10809 573 aaKnown RBP13.05□□□□□ -0.32
HDAC9-228ENST00000524023 APOBRQ0VD83 1088 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 CCDC191Q8NCU4 936 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 KIAA1524Q8TCG1 905 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 ZNF594Q96JF6 807 aaPredicted RBP13.05□□□□□ -0.32
HDAC9-228ENST00000524023 PRIMPOLQ96LW4 560 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 MAP7D2Q96T17 732 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 PCDH11XQ9BZA7 1347 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 PCDH11YQ9BZA8 1340 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 SPEF2Q9C093 1822 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 ERVV-2B6SEH9 535 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 CTDNEP1O95476 244 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 IFIT1P09914 478 aaKnown RBP13.05□□□□□ -0.32
HDAC9-228ENST00000524023 NAA16Q6N069 864 aaPredicted RBP13.05□□□□□ -0.32
HDAC9-228ENST00000524023 CADPS2Q86UW7 1296 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 ZCRB1Q8TBF4 217 aaKnown RBP13.05□□□□□ -0.32
HDAC9-228ENST00000524023 KCPQ6ZWJ8 1503 aa13.05□□□□□ -0.32
HDAC9-228ENST00000524023 A0A1B0GUL7 405 aa13.04□□□□□ -0.32
HDAC9-228ENST00000524023 E7EWF7 191 aa13.04□□□□□ -0.32
HDAC9-228ENST00000524023 RNF113AO15541 343 aaKnown RBP13.04□□□□□ -0.32
HDAC9-228ENST00000524023 CIAO1O76071 339 aa13.04□□□□□ -0.32
HDAC9-228ENST00000524023 ADD1P35611 737 aaKnown RBP13.04□□□□□ -0.32
HDAC9-228ENST00000524023 HMGN5P82970 282 aaKnown RBP13.04□□□□□ -0.32
HDAC9-228ENST00000524023 ZBTB3Q9H5J0 574 aa13.04□□□□□ -0.32
HDAC9-228ENST00000524023 ATG3Q9NT62 314 aa13.04□□□□□ -0.32
HDAC9-228ENST00000524023 PYCARDQ9ULZ3 195 aa13.04□□□□□ -0.32
HDAC9-228ENST00000524023 MAST3O60307 1309 aa13.04□□□□□ -0.32
HDAC9-228ENST00000524023 A0A0G2JLW4 131 aa13.04□□□□□ -0.32
HDAC9-228ENST00000524023 PTPDC1A2A3K4 754 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms