RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	PDIA6	Q15084	440 aa		13.86	□□□□□ -0.19
CLDND1-231	ENST00000515620	HABP4	Q5JVS0	413 aa	Known RBP	13.86	□□□□□ -0.19
CLDND1-231	ENST00000515620	COL4A1	P02462	1669 aa		13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	NEFM	P07197	916 aa		13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	PPP2R1A	P30153	589 aa		13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	GPSM2	P81274	684 aa		13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	AIMP1	Q12904	312 aa	Known RBP	13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	HSP90AB3P	Q58FF7	597 aa		13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	ANGEL2	Q5VTE6	544 aa	Known RBP	13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	CELF1	Q92879	486 aa	Known RBP	13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	POLL	Q9UGP5	575 aa		13.85	□□□□□ -0.19
CLDND1-231	ENST00000515620	FKBP1B	P68106	108 aa		13.84	□□□□□ -0.19
CLDND1-231	ENST00000515620	MOB2	Q70IA6	237 aa		13.84	□□□□□ -0.19
CLDND1-231	ENST00000515620	EYA3	Q99504	573 aa		13.84	□□□□□ -0.19
CLDND1-231	ENST00000515620	GPR25	O00155	361 aa		13.83	□□□□□ -0.2
CLDND1-231	ENST00000515620	SCARF1	Q14162	830 aa		13.83	□□□□□ -0.2
CLDND1-231	ENST00000515620	COPS6	Q7L5N1	327 aa		13.83	□□□□□ -0.2
CLDND1-231	ENST00000515620	XAGE3	Q8WTP9	111 aa		13.83	□□□□□ -0.2
CLDND1-231	ENST00000515620	NECTIN2	Q92692	538 aa		13.83	□□□□□ -0.2
CLDND1-231	ENST00000515620	TSPYL4	Q9UJ04	414 aa		13.83	□□□□□ -0.2
CLDND1-231	ENST00000515620	SCN9A	Q15858	1988 aa		13.82	□□□□□ -0.2
CLDND1-231	ENST00000515620	UBE2Q2L	H0YL09	131 aa		13.82	□□□□□ -0.2
CLDND1-231	ENST00000515620	VIL1	P09327	827 aa	Known RBP	13.82	□□□□□ -0.2
CLDND1-231	ENST00000515620	MKRN3	Q13064	507 aa	Known RBP	13.82	□□□□□ -0.2
CLDND1-231	ENST00000515620	TCIRG1	Q13488	830 aa		13.82	□□□□□ -0.2
CLDND1-231	ENST00000515620	TBC1D16	Q8TBP0	767 aa		13.82	□□□□□ -0.2
CLDND1-231	ENST00000515620	SCAF8	Q9UPN6	1271 aa	Known RBP	13.82	□□□□□ -0.2
CLDND1-231	ENST00000515620		G3V3G9	751 aa		13.81	□□□□□ -0.2
CLDND1-231	ENST00000515620	ZNF280A	P59817	542 aa	Predicted RBP	13.81	□□□□□ -0.2
CLDND1-231	ENST00000515620	NFE2L2	Q16236	605 aa		13.81	□□□□□ -0.2
CLDND1-231	ENST00000515620	DCAF8	Q5TAQ9	597 aa		13.81	□□□□□ -0.2
CLDND1-231	ENST00000515620	TTLL12	Q14166	644 aa	Predicted RBP	13.8	□□□□□ -0.2
CLDND1-231	ENST00000515620	NOM1	Q5C9Z4	860 aa	Known RBP	13.8	□□□□□ -0.2
CLDND1-231	ENST00000515620	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.8	□□□□□ -0.2
CLDND1-231	ENST00000515620	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.8	□□□□□ -0.2
CLDND1-231	ENST00000515620	ZNF609	O15014	1411 aa		13.8	□□□□□ -0.2
CLDND1-231	ENST00000515620	FKTN	O75072	461 aa		13.79	□□□□□ -0.2
CLDND1-231	ENST00000515620	UFL1	O94874	794 aa		13.79	□□□□□ -0.2
CLDND1-231	ENST00000515620	TM4SF4	P48230	202 aa		13.79	□□□□□ -0.2
CLDND1-231	ENST00000515620	SF3B3	Q15393	1217 aa	Known RBP	13.79	□□□□□ -0.2
CLDND1-231	ENST00000515620	PRAMEF18	Q5VWM3	479 aa		13.79	□□□□□ -0.2
CLDND1-231	ENST00000515620	AGBL3	Q8NEM8	1001 aa		13.79	□□□□□ -0.2
CLDND1-231	ENST00000515620	FAM89A	Q96GI7	184 aa		13.79	□□□□□ -0.2
CLDND1-231	ENST00000515620	MYOZ2	Q9NPC6	264 aa		13.79	□□□□□ -0.2
CLDND1-231	ENST00000515620	PITPNM2	Q9BZ72	1349 aa		13.79	□□□□□ -0.2
CLDND1-231	ENST00000515620	POTEF	A5A3E0	1075 aa		13.78	□□□□□ -0.2
CLDND1-231	ENST00000515620	SREBF2	Q12772	1141 aa		13.78	□□□□□ -0.2
CLDND1-231	ENST00000515620	RTL5	Q5HYW3	569 aa	Predicted RBP	13.78	□□□□□ -0.2
CLDND1-231	ENST00000515620	PLEKHF1	Q96S99	279 aa		13.78	□□□□□ -0.2
CLDND1-231	ENST00000515620	R3HDML	Q9H3Y0	253 aa		13.78	□□□□□ -0.2
CLDND1-231	ENST00000515620	USP17L8	P0C7I0	530 aa		13.77	□□□□□ -0.21
CLDND1-231	ENST00000515620	FXR1	P51114	621 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
CLDND1-231	ENST00000515620	CCER1	Q8TC90	406 aa	Predicted RBP	13.77	□□□□□ -0.21
CLDND1-231	ENST00000515620	ANKIB1	Q9P2G1	1089 aa		13.77	□□□□□ -0.21
CLDND1-231	ENST00000515620	GGA1	Q9UJY5	639 aa		13.77	□□□□□ -0.21
CLDND1-231	ENST00000515620	MAPK8IP3	Q9UPT6	1336 aa		13.77	□□□□□ -0.21
CLDND1-231	ENST00000515620	ATP5J2-PTCD1	G3V325	749 aa		13.76	□□□□□ -0.21
CLDND1-231	ENST00000515620	RPS8	P62241	208 aa	Known RBP	13.76	□□□□□ -0.21
CLDND1-231	ENST00000515620	GML	Q99445	158 aa		13.76	□□□□□ -0.21
CLDND1-231	ENST00000515620	CFHR5	Q9BXR6	569 aa		13.76	□□□□□ -0.21
CLDND1-231	ENST00000515620	PODXL2	Q9NZ53	605 aa		13.76	□□□□□ -0.21
CLDND1-231	ENST00000515620	TRIM17	Q9Y577	477 aa		13.76	□□□□□ -0.21
CLDND1-231	ENST00000515620	IRS4	O14654	1257 aa	Predicted RBP	13.75	□□□□□ -0.21
CLDND1-231	ENST00000515620	NF2	P35240	595 aa		13.75	□□□□□ -0.21
CLDND1-231	ENST00000515620	NBPF9	Q3BBW0	867 aa		13.75	□□□□□ -0.21
CLDND1-231	ENST00000515620	CHPF2	Q9P2E5	772 aa		13.75	□□□□□ -0.21
CLDND1-231	ENST00000515620	PSME4	Q14997	1843 aa		13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	PTPN12	Q05209	780 aa	Known RBP	13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	PRKG1	Q13976	671 aa		13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	INTS3	Q68E01	1043 aa	Known RBP	13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	OTOP1	Q7RTM1	612 aa		13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	PLBD2	Q8NHP8	589 aa		13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	ISCA1	Q9BUE6	129 aa		13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	SEC31B	Q9NQW1	1179 aa		13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	HTT	P42858	3142 aa		13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	MKI67	P46013	3256 aa	Known RBP	13.74	□□□□□ -0.21
CLDND1-231	ENST00000515620	USP17L3	A6NCW0	530 aa		13.73	□□□□□ -0.21
CLDND1-231	ENST00000515620	USP17L4	A6NCW7	530 aa		13.73	□□□□□ -0.21
CLDND1-231	ENST00000515620	KRT24	Q2M2I5	525 aa		13.73	□□□□□ -0.21
CLDND1-231	ENST00000515620	USP17L1	Q7RTZ2	530 aa		13.73	□□□□□ -0.21
CLDND1-231	ENST00000515620	SPRYD7	Q5W111	196 aa		13.72	□□□□□ -0.21
CLDND1-231	ENST00000515620	ANKRD13D	Q6ZTN6	518 aa		13.72	□□□□□ -0.21
CLDND1-231	ENST00000515620	ARMC9	Q7Z3E5	817 aa		13.72	□□□□□ -0.21
CLDND1-231	ENST00000515620	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.72	□□□□□ -0.21
CLDND1-231	ENST00000515620	SASH1	O94885	1247 aa		13.71	□□□□□ -0.21
CLDND1-231	ENST00000515620	ALDH1A1	P00352	501 aa		13.71	□□□□□ -0.21
CLDND1-231	ENST00000515620	EN2	P19622	333 aa	Predicted RBP	13.71	□□□□□ -0.21
CLDND1-231	ENST00000515620	RIPK4	P57078	832 aa		13.71	□□□□□ -0.21
CLDND1-231	ENST00000515620	MXD3	Q9BW11	206 aa		13.71	□□□□□ -0.21
CLDND1-231	ENST00000515620	BABAM1	Q9NWV8	329 aa		13.71	□□□□□ -0.21
CLDND1-231	ENST00000515620	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.71	□□□□□ -0.21
CLDND1-231	ENST00000515620	XDH	P47989	1333 aa		13.7	□□□□□ -0.22
CLDND1-231	ENST00000515620	WNT10B	O00744	389 aa		13.7	□□□□□ -0.22
CLDND1-231	ENST00000515620	HDGFL1	Q5TGJ6	251 aa		13.7	□□□□□ -0.22
CLDND1-231	ENST00000515620	PODN	Q7Z5L7	613 aa		13.7	□□□□□ -0.22
CLDND1-231	ENST00000515620	OGFOD1	Q8N543	542 aa		13.7	□□□□□ -0.22
CLDND1-231	ENST00000515620	FBXW7	Q969H0	707 aa		13.7	□□□□□ -0.22
CLDND1-231	ENST00000515620	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.7	□□□□□ -0.22
CLDND1-231	ENST00000515620	PNN	Q9H307	717 aa	Known RBP	13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms