RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CSF1RP07333 972 aa17.64■□□□□ 0.41
NUP54-217ENST00000514987 CCDC158Q5M9N0 1113 aa17.64■□□□□ 0.41
NUP54-217ENST00000514987 PIGBQ92521 554 aa17.64■□□□□ 0.41
NUP54-217ENST00000514987 GDPD2Q9HCC8 539 aa17.64■□□□□ 0.41
NUP54-217ENST00000514987 DISP2A7MBM2 1401 aa17.64■□□□□ 0.41
NUP54-217ENST00000514987 PLCH1Q4KWH8 1693 aa17.64■□□□□ 0.41
NUP54-217ENST00000514987 ITGB4P16144 1822 aa17.63■□□□□ 0.41
NUP54-217ENST00000514987 VPS37CA5D8V6 355 aaPredicted RBP17.63■□□□□ 0.41
NUP54-217ENST00000514987 RNF113AO15541 343 aaKnown RBP17.63■□□□□ 0.41
NUP54-217ENST00000514987 ZFYP08048 801 aaPredicted RBP17.63■□□□□ 0.41
NUP54-217ENST00000514987 TIMM10P62072 90 aa17.63■□□□□ 0.41
NUP54-217ENST00000514987 UVSSAQ2YD98 709 aa17.63■□□□□ 0.41
NUP54-217ENST00000514987 FOXD4L6Q3SYB3 417 aaPredicted RBP17.63■□□□□ 0.41
NUP54-217ENST00000514987 LRRC24Q50LG9 513 aa17.63■□□□□ 0.41
NUP54-217ENST00000514987 FOXD4L3Q6VB84 417 aaPredicted RBP17.63■□□□□ 0.41
NUP54-217ENST00000514987 GIGYF2Q6Y7W6 1299 aaKnown RBP17.63■□□□□ 0.41
NUP54-217ENST00000514987 DNAJC10Q8IXB1 793 aa17.63■□□□□ 0.41
NUP54-217ENST00000514987 KRT85P78386 507 aa17.62■□□□□ 0.41
NUP54-217ENST00000514987 TAF7LQ5H9L4 462 aa17.62■□□□□ 0.41
NUP54-217ENST00000514987 ZSCAN30Q86W11 494 aa17.62■□□□□ 0.41
NUP54-217ENST00000514987 LLPHQ9BRT6 129 aaKnown RBP17.62■□□□□ 0.41
NUP54-217ENST00000514987 BTG4Q9NY30 223 aa17.62■□□□□ 0.41
NUP54-217ENST00000514987 ASAP1Q9ULH1 1129 aa17.62■□□□□ 0.41
NUP54-217ENST00000514987 ELP1O95163 1332 aa17.62■□□□□ 0.41
NUP54-217ENST00000514987 CYP21A2P08686 494 aa17.62■□□□□ 0.41
NUP54-217ENST00000514987 IFIT5Q13325 482 aaKnown RBP17.62■□□□□ 0.41
NUP54-217ENST00000514987 GORABQ5T7V8 394 aa17.62■□□□□ 0.41
NUP54-217ENST00000514987 GTF3C6Q969F1 213 aa17.62■□□□□ 0.41
NUP54-217ENST00000514987 BCL9O00512 1426 aa17.61■□□□□ 0.41
NUP54-217ENST00000514987 DHX32Q7L7V1 743 aaKnown RBP17.61■□□□□ 0.41
NUP54-217ENST00000514987 ZNF594Q96JF6 807 aaPredicted RBP17.61■□□□□ 0.41
NUP54-217ENST00000514987 CTNNA3Q9UI47 895 aa17.61■□□□□ 0.41
NUP54-217ENST00000514987 KIF3AQ9Y496 699 aa17.61■□□□□ 0.41
NUP54-217ENST00000514987 KDM4FA0A1W2PPD8 638 aa17.6■□□□□ 0.41
NUP54-217ENST00000514987 FIBPO43427 364 aa17.6■□□□□ 0.41
NUP54-217ENST00000514987 DNM1Q05193 864 aaKnown RBP17.6■□□□□ 0.41
NUP54-217ENST00000514987 TTC39AQ5SRH9 613 aa17.6■□□□□ 0.41
NUP54-217ENST00000514987 CCDC129Q6ZRS4 1044 aa17.6■□□□□ 0.41
NUP54-217ENST00000514987 Q6ZUG5 572 aa17.6■□□□□ 0.41
NUP54-217ENST00000514987 SEC62Q99442 399 aaKnown RBP17.6■□□□□ 0.41
NUP54-217ENST00000514987 SCAND2PQ9GZW5 306 aaPredicted RBP17.6■□□□□ 0.41
NUP54-217ENST00000514987 TAF6LQ9Y6J9 622 aa17.6■□□□□ 0.41
NUP54-217ENST00000514987 NDUFB9Q9Y6M9 179 aa17.6■□□□□ 0.41
NUP54-217ENST00000514987 ANKRD36CQ5JPF3 1778 aa17.6■□□□□ 0.41
NUP54-217ENST00000514987 COL22A1Q8NFW1 1626 aaPredicted RBP17.59■□□□□ 0.41
NUP54-217ENST00000514987 ERVV-1B6SEH8 477 aa17.58■□□□□ 0.41
NUP54-217ENST00000514987 EXOC5O00471 708 aa17.58■□□□□ 0.41
NUP54-217ENST00000514987 HSP90B1P14625 803 aaKnown RBP17.58■□□□□ 0.41
NUP54-217ENST00000514987 MCM5P33992 734 aa17.58■□□□□ 0.41
NUP54-217ENST00000514987 FGD1P98174 961 aa17.58■□□□□ 0.41
NUP54-217ENST00000514987 CDCA7Q9BWT1 371 aaPredicted RBP17.58■□□□□ 0.41
NUP54-217ENST00000514987 PUS3Q9BZE2 481 aaKnown RBP17.58■□□□□ 0.41
NUP54-217ENST00000514987 ZNF330Q9Y3S2 320 aaPredicted RBP17.58■□□□□ 0.41
NUP54-217ENST00000514987 PFKFB2O60825 505 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 HSPD1P10809 573 aaKnown RBP17.57■□□□□ 0.4
NUP54-217ENST00000514987 CYP19A1P11511 503 aaPredicted RBP17.57■□□□□ 0.4
NUP54-217ENST00000514987 MSNP26038 577 aaKnown RBP17.57■□□□□ 0.4
NUP54-217ENST00000514987 NLRP10Q86W26 655 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 XAGE2Q96GT9 111 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 TCEANC2Q96MN5 208 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 ZSCAN16Q9H4T2 348 aaPredicted RBP17.57■□□□□ 0.4
NUP54-217ENST00000514987 CCDC39Q9UFE4 941 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 HMGN5P82970 282 aaKnown RBP17.57■□□□□ 0.4
NUP54-217ENST00000514987 FBXL16Q8N461 479 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 FAM89AQ96GI7 184 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 ZNF512BQ96KM6 892 aaPredicted RBP17.57■□□□□ 0.4
NUP54-217ENST00000514987 AK7Q96M32 723 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 AGXT2Q9BYV1 514 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 CCDC9Q9Y3X0 531 aaKnown RBP17.57■□□□□ 0.4
NUP54-217ENST00000514987 MAST3O60307 1309 aa17.57■□□□□ 0.4
NUP54-217ENST00000514987 AHDC1Q5TGY3 1603 aaPredicted RBP17.56■□□□□ 0.4
NUP54-217ENST00000514987 LAMA4Q16363 1823 aa17.56■□□□□ 0.4
NUP54-217ENST00000514987 WNK3Q9BYP7 1800 aa17.56■□□□□ 0.4
NUP54-217ENST00000514987 ANKRD18BA2A2Z9 1011 aa17.56■□□□□ 0.4
NUP54-217ENST00000514987 EXOSC10Q01780 885 aaKnown RBP17.56■□□□□ 0.4
NUP54-217ENST00000514987 ZSCAN25Q6NSZ9 544 aa17.56■□□□□ 0.4
NUP54-217ENST00000514987 CDC37L1Q7L3B6 337 aa17.56■□□□□ 0.4
NUP54-217ENST00000514987 MYH3P11055 1940 aa17.55■□□□□ 0.4
NUP54-217ENST00000514987 IL6STP40189 918 aaPredicted RBP17.55■□□□□ 0.4
NUP54-217ENST00000514987 STK3Q13188 491 aa17.55■□□□□ 0.4
NUP54-217ENST00000514987 ATP2B3Q16720 1220 aa17.55■□□□□ 0.4
NUP54-217ENST00000514987 SMARCC2Q8TAQ2 1214 aa17.55■□□□□ 0.4
NUP54-217ENST00000514987 BRF1Q92994 677 aa17.55■□□□□ 0.4
NUP54-217ENST00000514987 ZNF274Q96GC6 653 aaPredicted RBP17.55■□□□□ 0.4
NUP54-217ENST00000514987 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.55■□□□□ 0.4
NUP54-217ENST00000514987 E7EWF7 191 aa17.54■□□□□ 0.4
NUP54-217ENST00000514987 CTSWP56202 376 aa17.54■□□□□ 0.4
NUP54-217ENST00000514987 FKBP4Q02790 459 aaKnown RBP eCLIP17.54■□□□□ 0.4
NUP54-217ENST00000514987 COL9A3Q14050 684 aaPredicted RBP17.54■□□□□ 0.4
NUP54-217ENST00000514987 TTF1Q15361 905 aaPredicted RBP17.54■□□□□ 0.4
NUP54-217ENST00000514987 NAA16Q6N069 864 aaPredicted RBP17.54■□□□□ 0.4
NUP54-217ENST00000514987 STOX1Q6ZVD7 989 aa17.54■□□□□ 0.4
NUP54-217ENST00000514987 TTLL11Q8NHH1 800 aa17.54■□□□□ 0.4
NUP54-217ENST00000514987 APPBP2Q92624 585 aa17.54■□□□□ 0.4
NUP54-217ENST00000514987 NOL7Q9UMY1 257 aaKnown RBP17.54■□□□□ 0.4
NUP54-217ENST00000514987 RIPOR2Q9Y4F9 1068 aa17.54■□□□□ 0.4
NUP54-217ENST00000514987 H3BQV1 296 aa17.53■□□□□ 0.4
NUP54-217ENST00000514987 PDE8AO60658 829 aa17.53■□□□□ 0.4
NUP54-217ENST00000514987 METTL24Q5JXM2 366 aa17.53■□□□□ 0.4
NUP54-217ENST00000514987 IFFO2Q5TF58 517 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 196.3 ms