RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 DDX60Q8IY21 1712 aaKnown RBP26.61■■□□□ 1.85
SQSTM1-215ENST00000514093 SLC10A3P09131 477 aa26.6■■□□□ 1.85
SQSTM1-215ENST00000514093 SULF1Q8IWU6 871 aa26.6■■□□□ 1.85
SQSTM1-215ENST00000514093 TBC1D16Q8TBP0 767 aa26.6■■□□□ 1.85
SQSTM1-215ENST00000514093 PDE4DIPQ5VU43 2346 aa26.59■■□□□ 1.85
SQSTM1-215ENST00000514093 CDCA5Q96FF9 252 aa26.59■■□□□ 1.85
SQSTM1-215ENST00000514093 EYA3Q99504 573 aa26.59■■□□□ 1.85
SQSTM1-215ENST00000514093 TMPOP42166 694 aaKnown RBP26.58■■□□□ 1.85
SQSTM1-215ENST00000514093 ANKRD13DQ6ZTN6 518 aa26.58■■□□□ 1.85
SQSTM1-215ENST00000514093 PLBD2Q8NHP8 589 aa26.58■■□□□ 1.85
SQSTM1-215ENST00000514093 ISCA1Q9BUE6 129 aa26.58■■□□□ 1.85
SQSTM1-215ENST00000514093 VIL1P09327 827 aaKnown RBP26.57■■□□□ 1.84
SQSTM1-215ENST00000514093 ZC3H12CQ9C0D7 883 aaKnown RBP26.57■■□□□ 1.84
SQSTM1-215ENST00000514093 LAS1LQ9Y4W2 734 aaKnown RBP26.57■■□□□ 1.84
SQSTM1-215ENST00000514093 NEUROD2Q15784 382 aa26.56■■□□□ 1.84
SQSTM1-215ENST00000514093 CTU1Q7Z7A3 348 aaKnown RBP26.56■■□□□ 1.84
SQSTM1-215ENST00000514093 AKAP11Q9UKA4 1901 aa26.56■■□□□ 1.84
SQSTM1-215ENST00000514093 RPS8P62241 208 aaKnown RBP26.55■■□□□ 1.84
SQSTM1-215ENST00000514093 ANGEL2Q5VTE6 544 aaKnown RBP26.55■■□□□ 1.84
SQSTM1-215ENST00000514093 G3V3G9 751 aa26.54■■□□□ 1.84
SQSTM1-215ENST00000514093 IRS4O14654 1257 aaPredicted RBP26.54■■□□□ 1.84
SQSTM1-215ENST00000514093 SCARF1Q14162 830 aa26.54■■□□□ 1.84
SQSTM1-215ENST00000514093 DCAF8Q5TAQ9 597 aa26.54■■□□□ 1.84
SQSTM1-215ENST00000514093 HDGFL1Q5TGJ6 251 aa26.54■■□□□ 1.84
SQSTM1-215ENST00000514093 RASAL3Q86YV0 1011 aa26.54■■□□□ 1.84
SQSTM1-215ENST00000514093 SCN9AQ15858 1988 aa26.54■■□□□ 1.84
SQSTM1-215ENST00000514093 LMOD3Q0VAK6 560 aa26.53■■□□□ 1.84
SQSTM1-215ENST00000514093 SEC31BQ9NQW1 1179 aa26.53■■□□□ 1.84
SQSTM1-215ENST00000514093 SCAF8Q9UPN6 1271 aaKnown RBP26.53■■□□□ 1.84
SQSTM1-215ENST00000514093 CHL1O00533 1208 aa26.52■■□□□ 1.84
SQSTM1-215ENST00000514093 UFL1O94874 794 aa26.52■■□□□ 1.84
SQSTM1-215ENST00000514093 MOB2Q70IA6 237 aa26.51■■□□□ 1.83
SQSTM1-215ENST00000514093 ANKIB1Q9P2G1 1089 aa26.51■■□□□ 1.83
SQSTM1-215ENST00000514093 HPS5Q9UPZ3 1129 aa26.51■■□□□ 1.83
SQSTM1-215ENST00000514093 CCDC146Q8IYE0 955 aa26.5■■□□□ 1.83
SQSTM1-215ENST00000514093 ZNF280AP59817 542 aaPredicted RBP26.49■■□□□ 1.83
SQSTM1-215ENST00000514093 RSBN1LQ6PCB5 846 aaPredicted RBP26.49■■□□□ 1.83
SQSTM1-215ENST00000514093 PODXL2Q9NZ53 605 aa26.49■■□□□ 1.83
SQSTM1-215ENST00000514093 DBF4Q9UBU7 674 aaPredicted RBP26.49■■□□□ 1.83
SQSTM1-215ENST00000514093 TBC1D8O95759 1140 aa26.48■■□□□ 1.83
SQSTM1-215ENST00000514093 PRPF38BQ5VTL8 546 aaKnown RBP26.48■■□□□ 1.83
SQSTM1-215ENST00000514093 GGA1Q9UJY5 639 aa26.48■■□□□ 1.83
SQSTM1-215ENST00000514093 PRAMEF18Q5VWM3 479 aa26.47■■□□□ 1.83
SQSTM1-215ENST00000514093 REM2Q8IYK8 340 aaPredicted RBP26.47■■□□□ 1.83
SQSTM1-215ENST00000514093 AGBL3Q8NEM8 1001 aa26.47■■□□□ 1.83
SQSTM1-215ENST00000514093 CCDC85AQ96PX6 553 aaPredicted RBP26.47■■□□□ 1.83
SQSTM1-215ENST00000514093 UBE2Q2LH0YL09 131 aa26.46■■□□□ 1.83
SQSTM1-215ENST00000514093 MYOZ2Q9NPC6 264 aa26.46■■□□□ 1.83
SQSTM1-215ENST00000514093 HDAC9Q9UKV0 1011 aa26.46■■□□□ 1.83
SQSTM1-215ENST00000514093 TRIM35Q9UPQ4 493 aa26.46■■□□□ 1.83
SQSTM1-215ENST00000514093 TRIM28Q13263 835 aaKnown RBP26.45■■□□□ 1.82
SQSTM1-215ENST00000514093 ZNF296Q8WUU4 475 aaPredicted RBP26.45■■□□□ 1.82
SQSTM1-215ENST00000514093 JARID2Q92833 1246 aaPredicted RBP26.45■■□□□ 1.82
SQSTM1-215ENST00000514093 HYPKQ9NX55 129 aa26.45■■□□□ 1.82
SQSTM1-215ENST00000514093 USP17L8P0C7I0 530 aa26.44■■□□□ 1.82
SQSTM1-215ENST00000514093 FKBP1BP68106 108 aa26.44■■□□□ 1.82
SQSTM1-215ENST00000514093 ZBTB38Q8NAP3 1195 aaPredicted RBP26.44■■□□□ 1.82
SQSTM1-215ENST00000514093 RIC3Q7Z5B4 369 aa26.43■■□□□ 1.82
SQSTM1-215ENST00000514093 GMLQ99445 158 aa26.43■■□□□ 1.82
SQSTM1-215ENST00000514093 MKRN3Q13064 507 aaKnown RBP26.42■■□□□ 1.82
SQSTM1-215ENST00000514093 PAPPA2Q9BXP8 1791 aa26.41■■□□□ 1.82
SQSTM1-215ENST00000514093 WTIPA6NIX2 430 aaPredicted RBP26.41■■□□□ 1.82
SQSTM1-215ENST00000514093 HOXB7P09629 217 aa26.41■■□□□ 1.82
SQSTM1-215ENST00000514093 TTLL12Q14166 644 aaPredicted RBP26.41■■□□□ 1.82
SQSTM1-215ENST00000514093 NBPF9Q3BBW0 867 aa26.41■■□□□ 1.82
SQSTM1-215ENST00000514093 DUSP27Q5VZP5 1158 aa26.41■■□□□ 1.82
SQSTM1-215ENST00000514093 USP17L3A6NCW0 530 aa26.4■■□□□ 1.82
SQSTM1-215ENST00000514093 USP17L4A6NCW7 530 aa26.4■■□□□ 1.82
SQSTM1-215ENST00000514093 PKN2Q16513 984 aaKnown RBP26.4■■□□□ 1.82
SQSTM1-215ENST00000514093 USP17L1Q7RTZ2 530 aa26.4■■□□□ 1.82
SQSTM1-215ENST00000514093 MYD88Q99836 296 aa26.4■■□□□ 1.82
SQSTM1-215ENST00000514093 PHAXQ9H814 394 aaKnown RBP26.4■■□□□ 1.82
SQSTM1-215ENST00000514093 PITPNM2Q9BZ72 1349 aa26.39■■□□□ 1.82
SQSTM1-215ENST00000514093 ZNF609O15014 1411 aa26.39■■□□□ 1.82
SQSTM1-215ENST00000514093 CCDC152Q4G0S7 254 aa26.39■■□□□ 1.82
SQSTM1-215ENST00000514093 MXD3Q9BW11 206 aa26.39■■□□□ 1.82
SQSTM1-215ENST00000514093 GOLGA2Q08379 1002 aa26.38■■□□□ 1.81
SQSTM1-215ENST00000514093 XDHP47989 1333 aa26.38■■□□□ 1.81
SQSTM1-215ENST00000514093 GPR25O00155 361 aa26.37■■□□□ 1.81
SQSTM1-215ENST00000514093 PDE8AO60658 829 aa26.36■■□□□ 1.81
SQSTM1-215ENST00000514093 TM4SF4P48230 202 aa26.36■■□□□ 1.81
SQSTM1-215ENST00000514093 PODNQ7Z5L7 613 aa26.36■■□□□ 1.81
SQSTM1-215ENST00000514093 ANKRD18AQ8IVF6 992 aa26.36■■□□□ 1.81
SQSTM1-215ENST00000514093 PSME4Q14997 1843 aa26.35■■□□□ 1.81
SQSTM1-215ENST00000514093 PCCAP05165 728 aaPredicted RBP26.35■■□□□ 1.81
SQSTM1-215ENST00000514093 HSP90B1P14625 803 aaKnown RBP26.35■■□□□ 1.81
SQSTM1-215ENST00000514093 ATP2B4P23634 1241 aa26.35■■□□□ 1.81
SQSTM1-215ENST00000514093 FBXW7Q969H0 707 aa26.35■■□□□ 1.81
SQSTM1-215ENST00000514093 RUNDC1Q96C34 613 aa26.35■■□□□ 1.81
SQSTM1-215ENST00000514093 R3HDMLQ9H3Y0 253 aa26.35■■□□□ 1.81
SQSTM1-215ENST00000514093 MBIPQ9NS73 344 aa26.35■■□□□ 1.81
SQSTM1-215ENST00000514093 ELL2O00472 640 aaPredicted RBP26.34■■□□□ 1.81
SQSTM1-215ENST00000514093 PRKG1Q13976 671 aa26.34■■□□□ 1.81
SQSTM1-215ENST00000514093 RALBP1Q15311 655 aa26.34■■□□□ 1.81
SQSTM1-215ENST00000514093 FBXO46Q6PJ61 603 aaPredicted RBP26.33■■□□□ 1.81
SQSTM1-215ENST00000514093 CCDC191Q8NCU4 936 aa26.33■■□□□ 1.81
SQSTM1-215ENST00000514093 WNT10BO00744 389 aa26.32■■□□□ 1.8
SQSTM1-215ENST00000514093 CWC25Q9NXE8 425 aaPredicted RBP26.32■■□□□ 1.8
SQSTM1-215ENST00000514093 PTPN12Q05209 780 aaKnown RBP26.31■■□□□ 1.8
SQSTM1-215ENST00000514093 DACT2Q5SW24 774 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms