RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 RTL9Q8NET4 1388 aa15.24■□□□□ 0.03
RNF4-216ENST00000511859 EIF2S2P20042 333 aaKnown RBP15.24■□□□□ 0.03
RNF4-216ENST00000511859 SCARF1Q14162 830 aa15.24■□□□□ 0.03
RNF4-216ENST00000511859 PPP2R1AP30153 589 aa15.24■□□□□ 0.03
RNF4-216ENST00000511859 SF3B3Q15393 1217 aaKnown RBP15.24■□□□□ 0.03
RNF4-216ENST00000511859 DOK7Q18PE1 504 aa15.24■□□□□ 0.03
RNF4-216ENST00000511859 ANGEL2Q5VTE6 544 aaKnown RBP15.24■□□□□ 0.03
RNF4-216ENST00000511859 COPS6Q7L5N1 327 aa15.24■□□□□ 0.03
RNF4-216ENST00000511859 AGBL3Q8NEM8 1001 aa15.24■□□□□ 0.03
RNF4-216ENST00000511859 ZC3H12CQ9C0D7 883 aaKnown RBP15.24■□□□□ 0.03
RNF4-216ENST00000511859 PITPNM2Q9BZ72 1349 aa15.23■□□□□ 0.03
RNF4-216ENST00000511859 DDX60Q8IY21 1712 aaKnown RBP15.23■□□□□ 0.03
RNF4-216ENST00000511859 PAPPA2Q9BXP8 1791 aa15.23■□□□□ 0.03
RNF4-216ENST00000511859 ZNF280AP59817 542 aaPredicted RBP15.23■□□□□ 0.03
RNF4-216ENST00000511859 GPSM2P81274 684 aa15.23■□□□□ 0.03
RNF4-216ENST00000511859 CELF1Q92879 486 aaKnown RBP15.23■□□□□ 0.03
RNF4-216ENST00000511859 CFHR5Q9BXR6 569 aa15.23■□□□□ 0.03
RNF4-216ENST00000511859 SCN9AQ15858 1988 aa15.22■□□□□ 0.03
RNF4-216ENST00000511859 ASTN2O75129 1339 aaPredicted RBP15.22■□□□□ 0.03
RNF4-216ENST00000511859 G3V3G9 751 aa15.22■□□□□ 0.03
RNF4-216ENST00000511859 FKTNO75072 461 aa15.22■□□□□ 0.03
RNF4-216ENST00000511859 DCAF8Q5TAQ9 597 aa15.22■□□□□ 0.03
RNF4-216ENST00000511859 INTS3Q68E01 1043 aaKnown RBP15.22■□□□□ 0.03
RNF4-216ENST00000511859 TBC1D16Q8TBP0 767 aa15.22■□□□□ 0.03
RNF4-216ENST00000511859 SREBF2Q12772 1141 aa15.21■□□□□ 0.02
RNF4-216ENST00000511859 AIMP1Q12904 312 aaKnown RBP15.21■□□□□ 0.02
RNF4-216ENST00000511859 NFE2L2Q16236 605 aa15.21■□□□□ 0.02
RNF4-216ENST00000511859 PROSER3Q2NL68 480 aa15.21■□□□□ 0.02
RNF4-216ENST00000511859 TSPYL4Q9UJ04 414 aa15.21■□□□□ 0.02
RNF4-216ENST00000511859 UBE2Q2LH0YL09 131 aa15.2■□□□□ 0.02
RNF4-216ENST00000511859 ANXA1P04083 346 aa15.2■□□□□ 0.02
RNF4-216ENST00000511859 RPS8P62241 208 aaKnown RBP15.2■□□□□ 0.02
RNF4-216ENST00000511859 RSBN1LQ6PCB5 846 aaPredicted RBP15.2■□□□□ 0.02
RNF4-216ENST00000511859 XAGE3Q8WTP9 111 aa15.2■□□□□ 0.02
RNF4-216ENST00000511859 PNNQ9H307 717 aaKnown RBP15.2■□□□□ 0.02
RNF4-216ENST00000511859 MYOZ2Q9NPC6 264 aa15.2■□□□□ 0.02
RNF4-216ENST00000511859 BABAM1Q9NWV8 329 aa15.2■□□□□ 0.02
RNF4-216ENST00000511859 PODXL2Q9NZ53 605 aa15.2■□□□□ 0.02
RNF4-216ENST00000511859 BRCA2P51587 3418 aa15.2■□□□□ 0.02
RNF4-216ENST00000511859 HTTP42858 3142 aa15.19■□□□□ 0.02
RNF4-216ENST00000511859 ZNF609O15014 1411 aa15.19■□□□□ 0.02
RNF4-216ENST00000511859 USP17L8P0C7I0 530 aa15.19■□□□□ 0.02
RNF4-216ENST00000511859 CCER1Q8TC90 406 aaPredicted RBP15.19■□□□□ 0.02
RNF4-216ENST00000511859 PLEKHF1Q96S99 279 aa15.19■□□□□ 0.02
RNF4-216ENST00000511859 ALDH1A1P00352 501 aa15.18■□□□□ 0.02
RNF4-216ENST00000511859 MOB2Q70IA6 237 aa15.18■□□□□ 0.02
RNF4-216ENST00000511859 CEP290O15078 2479 aa15.17■□□□□ 0.02
RNF4-216ENST00000511859 NF2P35240 595 aa15.17■□□□□ 0.02
RNF4-216ENST00000511859 TTLL12Q14166 644 aaPredicted RBP15.17■□□□□ 0.02
RNF4-216ENST00000511859 FAM89AQ96GI7 184 aa15.17■□□□□ 0.02
RNF4-216ENST00000511859 GMLQ99445 158 aa15.17■□□□□ 0.02
RNF4-216ENST00000511859 PSME4Q14997 1843 aa15.17■□□□□ 0.02
RNF4-216ENST00000511859 FXR1P51114 621 aaKnown RBP eCLIP15.16■□□□□ 0.02
RNF4-216ENST00000511859 INHBEP58166 350 aa15.16■□□□□ 0.02
RNF4-216ENST00000511859 ANKIB1Q9P2G1 1089 aa15.16■□□□□ 0.02
RNF4-216ENST00000511859 PODNQ7Z5L7 613 aa15.15■□□□□ 0.02
RNF4-216ENST00000511859 PLBD2Q8NHP8 589 aa15.15■□□□□ 0.02
RNF4-216ENST00000511859 ISCA1Q9BUE6 129 aa15.15■□□□□ 0.02
RNF4-216ENST00000511859 GGA1Q9UJY5 639 aa15.15■□□□□ 0.02
RNF4-216ENST00000511859 SZT2Q5T011 3432 aa15.15■□□□□ 0.02
RNF4-216ENST00000511859 POTEFA5A3E0 1075 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 USP17L3A6NCW0 530 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 USP17L4A6NCW7 530 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 UFL1O94874 794 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 HSP90B1P14625 803 aaKnown RBP15.14■□□□□ 0.01
RNF4-216ENST00000511859 PRAMEF18Q5VWM3 479 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 ANKRD13DQ6ZTN6 518 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 USP17L1Q7RTZ2 530 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 ARMC9Q7Z3E5 817 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 R3HDMLQ9H3Y0 253 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 TRIM17Q9Y577 477 aa15.14■□□□□ 0.01
RNF4-216ENST00000511859 IRS4O14654 1257 aaPredicted RBP15.13■□□□□ 0.01
RNF4-216ENST00000511859 MMP14P50281 582 aa15.13■□□□□ 0.01
RNF4-216ENST00000511859 TRIM28Q13263 835 aaKnown RBP15.13■□□□□ 0.01
RNF4-216ENST00000511859 OGFOD1Q8N543 542 aa15.13■□□□□ 0.01
RNF4-216ENST00000511859 MAPK8IP3Q9UPT6 1336 aa15.13■□□□□ 0.01
RNF4-216ENST00000511859 PTPN12Q05209 780 aaKnown RBP15.12■□□□□ 0.01
RNF4-216ENST00000511859 MKRN3Q13064 507 aaKnown RBP15.12■□□□□ 0.01
RNF4-216ENST00000511859 NBPF9Q3BBW0 867 aa15.12■□□□□ 0.01
RNF4-216ENST00000511859 OTOP1Q7RTM1 612 aa15.12■□□□□ 0.01
RNF4-216ENST00000511859 ZNF428Q96B54 188 aa15.12■□□□□ 0.01
RNF4-216ENST00000511859 SCAF8Q9UPN6 1271 aaKnown RBP15.12■□□□□ 0.01
RNF4-216ENST00000511859 TRIOBPQ9H2D6 2365 aa15.12■□□□□ 0.01
RNF4-216ENST00000511859 RBBP6Q7Z6E9 1792 aaKnown RBP15.12■□□□□ 0.01
RNF4-216ENST00000511859 SPRYD7Q5W111 196 aa15.11■□□□□ 0.01
RNF4-216ENST00000511859 MANSC4A6NHS7 340 aaPredicted RBP15.11■□□□□ 0.01
RNF4-216ENST00000511859 ATP5J2-PTCD1G3V325 749 aa15.11■□□□□ 0.01
RNF4-216ENST00000511859 WNT10BO00744 389 aa15.11■□□□□ 0.01
RNF4-216ENST00000511859 RIPK4P57078 832 aa15.11■□□□□ 0.01
RNF4-216ENST00000511859 RTL5Q5HYW3 569 aaPredicted RBP15.11■□□□□ 0.01
RNF4-216ENST00000511859 LDLRAD1Q5T700 205 aa15.11■□□□□ 0.01
RNF4-216ENST00000511859 PTPN22Q9Y2R2 807 aa15.11■□□□□ 0.01
RNF4-216ENST00000511859 XDHP47989 1333 aa15.1■□□□□ 0.01
RNF4-216ENST00000511859 ATP2B4P23634 1241 aa15.1■□□□□ 0.01
RNF4-216ENST00000511859 IFNL1Q8IU54 200 aa15.1■□□□□ 0.01
RNF4-216ENST00000511859 ERO1AQ96HE7 468 aa15.1■□□□□ 0.01
RNF4-216ENST00000511859 SEC31BQ9NQW1 1179 aa15.1■□□□□ 0.01
RNF4-216ENST00000511859 COL4A1P02462 1669 aa15.09■□□□□ 0.01
RNF4-216ENST00000511859 MYO3BQ8WXR4 1341 aa15.09■□□□□ 0.01
RNF4-216ENST00000511859 CCDC152Q4G0S7 254 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms