RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 LTBP3Q9NS15 1303 aa14.28□□□□□ -0.12
LIMCH1-210ENST00000509454 CACNB1Q02641 598 aaPredicted RBP14.28□□□□□ -0.12
LIMCH1-210ENST00000509454 PSMD1Q99460 953 aa14.28□□□□□ -0.12
LIMCH1-210ENST00000509454 PPIP5K2O43314 1243 aa14.27□□□□□ -0.12
LIMCH1-210ENST00000509454 UFL1O94874 794 aa14.27□□□□□ -0.12
LIMCH1-210ENST00000509454 IARSP41252 1262 aaKnown RBP14.27□□□□□ -0.12
LIMCH1-210ENST00000509454 KCNJ4P48050 445 aa14.27□□□□□ -0.12
LIMCH1-210ENST00000509454 RABL6Q3YEC7 729 aaPredicted RBP14.27□□□□□ -0.12
LIMCH1-210ENST00000509454 LDHAL6AQ6ZMR3 332 aa14.27□□□□□ -0.12
LIMCH1-210ENST00000509454 LARGE2Q8N3Y3 721 aa14.27□□□□□ -0.12
LIMCH1-210ENST00000509454 C1orf115Q9H7X2 142 aa14.27□□□□□ -0.12
LIMCH1-210ENST00000509454 GGA1Q9UJY5 639 aa14.27□□□□□ -0.12
LIMCH1-210ENST00000509454 GOLGB1Q14789 3259 aaKnown RBP14.27□□□□□ -0.13
LIMCH1-210ENST00000509454 SBF1O95248 1867 aa14.26□□□□□ -0.13
LIMCH1-210ENST00000509454 PRELPP51888 382 aa14.26□□□□□ -0.13
LIMCH1-210ENST00000509454 RRP1P56182 461 aaKnown RBP14.26□□□□□ -0.13
LIMCH1-210ENST00000509454 MVPQ14764 893 aaKnown RBP14.26□□□□□ -0.13
LIMCH1-210ENST00000509454 C20orf194Q5TEA3 1177 aa14.26□□□□□ -0.13
LIMCH1-210ENST00000509454 ZNF526Q8TF50 670 aaPredicted RBP14.26□□□□□ -0.13
LIMCH1-210ENST00000509454 JDP2Q8WYK2 163 aa14.26□□□□□ -0.13
LIMCH1-210ENST00000509454 XDHP47989 1333 aa14.26□□□□□ -0.13
LIMCH1-210ENST00000509454 G3V3G9 751 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 RIMBP2O15034 1052 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 AOC3Q16853 763 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 DCAF8Q5TAQ9 597 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 KLHDC4Q8TBB5 520 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 GPR101Q96P66 508 aaPredicted RBP14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 EYA3Q99504 573 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 ANKRD2Q9GZV1 360 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 DDX19BQ9UMR2 479 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 MINPP1Q9UNW1 487 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 LRRC37AA6NMS7 1700 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 SRGAP3O43295 1099 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 CHRNDQ07001 517 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 PDE3AQ14432 1141 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 WASHC4Q2M389 1173 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 NIM1KQ8IY84 436 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 HELBQ8NG08 1087 aaPredicted RBP14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 POLLQ9UGP5 575 aa14.25□□□□□ -0.13
LIMCH1-210ENST00000509454 ZBTB7BO15156 539 aaPredicted RBP14.24□□□□□ -0.13
LIMCH1-210ENST00000509454 ATP2B4P23634 1241 aa14.24□□□□□ -0.13
LIMCH1-210ENST00000509454 TBC1D16Q8TBP0 767 aa14.24□□□□□ -0.13
LIMCH1-210ENST00000509454 RTFDC1Q9BY42 306 aaPredicted RBP14.24□□□□□ -0.13
LIMCH1-210ENST00000509454 PUS3Q9BZE2 481 aaKnown RBP14.24□□□□□ -0.13
LIMCH1-210ENST00000509454 SIL1Q9H173 461 aa14.24□□□□□ -0.13
LIMCH1-210ENST00000509454 CHMP4BQ9H444 224 aaKnown RBP14.24□□□□□ -0.13
LIMCH1-210ENST00000509454 SNED1Q8TER0 1413 aa14.24□□□□□ -0.13
LIMCH1-210ENST00000509454 TIAM2Q8IVF5 1701 aa14.23□□□□□ -0.13
LIMCH1-210ENST00000509454 TAF5LO75529 589 aa14.23□□□□□ -0.13
LIMCH1-210ENST00000509454 METTL24Q5JXM2 366 aa14.23□□□□□ -0.13
LIMCH1-210ENST00000509454 ZC3H12CQ9C0D7 883 aaKnown RBP14.23□□□□□ -0.13
LIMCH1-210ENST00000509454 PODXL2Q9NZ53 605 aa14.23□□□□□ -0.13
LIMCH1-210ENST00000509454 LRRC24Q50LG9 513 aa14.22□□□□□ -0.13
LIMCH1-210ENST00000509454 EIF6P56537 245 aaKnown RBP14.21□□□□□ -0.13
LIMCH1-210ENST00000509454 C1QBPQ07021 282 aaKnown RBP14.21□□□□□ -0.13
LIMCH1-210ENST00000509454 KIAA2012Q0VF49 1180 aa14.21□□□□□ -0.13
LIMCH1-210ENST00000509454 DOK7Q18PE1 504 aa14.21□□□□□ -0.13
LIMCH1-210ENST00000509454 VPS33BQ9H267 617 aa14.21□□□□□ -0.13
LIMCH1-210ENST00000509454 PA2G4Q9UQ80 394 aaKnown RBP14.21□□□□□ -0.13
LIMCH1-210ENST00000509454 DICER1Q9UPY3 1922 aaKnown RBP14.21□□□□□ -0.13
LIMCH1-210ENST00000509454 ZNF804BA4D1E1 1349 aa14.21□□□□□ -0.14
LIMCH1-210ENST00000509454 MROH5Q6ZUA9 1318 aa14.21□□□□□ -0.14
LIMCH1-210ENST00000509454 DUOX1Q9NRD9 1551 aa14.21□□□□□ -0.14
LIMCH1-210ENST00000509454 EYA2O00167 538 aa14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 RFX5P48382 616 aaPredicted RBP14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 PTPN12Q05209 780 aaKnown RBP14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 DPY19L2Q6NUT2 758 aa14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 DBNDD1Q9H9R9 158 aa14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 LEMD3Q9Y2U8 911 aa14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 SUPT16HQ9Y5B9 1047 aaKnown RBP14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 ZC3H4Q9UPT8 1303 aaKnown RBP14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 WTIPA6NIX2 430 aaPredicted RBP14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 OS9Q13438 667 aaPredicted RBP14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 GPBP1L1Q9HC44 474 aaPredicted RBP14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 GJA3Q9Y6H8 435 aa14.2□□□□□ -0.14
LIMCH1-210ENST00000509454 KDM2BQ8NHM5 1336 aa14.19□□□□□ -0.14
LIMCH1-210ENST00000509454 UTRNP46939 3433 aa14.19□□□□□ -0.14
LIMCH1-210ENST00000509454 PNMA6EA0A0J9YXQ4 647 aa14.19□□□□□ -0.14
LIMCH1-210ENST00000509454 ATP8B2P98198 1209 aa14.19□□□□□ -0.14
LIMCH1-210ENST00000509454 ZNF784Q8NCA9 323 aaPredicted RBP14.19□□□□□ -0.14
LIMCH1-210ENST00000509454 ZNRF3Q9ULT6 936 aa14.19□□□□□ -0.14
LIMCH1-210ENST00000509454 RIPOR2Q9Y4F9 1068 aa14.19□□□□□ -0.14
LIMCH1-210ENST00000509454 ZNF541Q9H0D2 1346 aa14.18□□□□□ -0.14
LIMCH1-210ENST00000509454 LTBP1Q14766 1721 aa14.18□□□□□ -0.14
LIMCH1-210ENST00000509454 SNAP23O00161 211 aa14.18□□□□□ -0.14
LIMCH1-210ENST00000509454 ECE2O60344 883 aa14.18□□□□□ -0.14
LIMCH1-210ENST00000509454 G3BP1Q13283 466 aaKnown RBP eCLIP14.18□□□□□ -0.14
LIMCH1-210ENST00000509454 MTX1Q13505 466 aa14.18□□□□□ -0.14
LIMCH1-210ENST00000509454 FBXW7Q969H0 707 aa14.18□□□□□ -0.14
LIMCH1-210ENST00000509454 CEP126Q9P2H0 1117 aa14.18□□□□□ -0.14
LIMCH1-210ENST00000509454 COL4A5P29400 1685 aa14.17□□□□□ -0.14
LIMCH1-210ENST00000509454 MED23Q9ULK4 1368 aa14.17□□□□□ -0.14
LIMCH1-210ENST00000509454 GLTPD2A6NH11 291 aa14.17□□□□□ -0.14
LIMCH1-210ENST00000509454 RAD17O75943 681 aa14.17□□□□□ -0.14
LIMCH1-210ENST00000509454 CEP85Q6P2H3 762 aa14.17□□□□□ -0.14
LIMCH1-210ENST00000509454 CRBNQ96SW2 442 aa14.17□□□□□ -0.14
LIMCH1-210ENST00000509454 COPRSQ9NQ92 184 aa14.17□□□□□ -0.14
LIMCH1-210ENST00000509454 ZBTB40Q9NUA8 1239 aa14.17□□□□□ -0.14
LIMCH1-210ENST00000509454 FZD9O00144 591 aa14.16□□□□□ -0.14
LIMCH1-210ENST00000509454 SURF6O75683 361 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms