RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 SMC4Q9NTJ3 1288 aa16.66■□□□□ 0.26
TCOF1-209ENST00000506630 ZBED9Q6R2W3 1325 aa16.66■□□□□ 0.26
TCOF1-209ENST00000506630 TRAF5O00463 557 aa16.65■□□□□ 0.26
TCOF1-209ENST00000506630 ALDH1L2Q3SY69 923 aa16.65■□□□□ 0.26
TCOF1-209ENST00000506630 CST9Q5W186 159 aa16.65■□□□□ 0.26
TCOF1-209ENST00000506630 LINS1Q8NG48 757 aa16.65■□□□□ 0.26
TCOF1-209ENST00000506630 TLL2Q9Y6L7 1015 aa16.65■□□□□ 0.26
TCOF1-209ENST00000506630 CDHR2Q9BYE9 1310 aa16.65■□□□□ 0.26
TCOF1-209ENST00000506630 PPIP5K2O43314 1243 aa16.64■□□□□ 0.25
TCOF1-209ENST00000506630 PDE8AO60658 829 aa16.64■□□□□ 0.25
TCOF1-209ENST00000506630 GRAPQ13588 217 aa16.64■□□□□ 0.25
TCOF1-209ENST00000506630 SLC4A10Q6U841 1118 aa16.64■□□□□ 0.25
TCOF1-209ENST00000506630 GRAPLQ8TC17 118 aaPredicted RBP16.64■□□□□ 0.25
TCOF1-209ENST00000506630 VPS33BQ9H267 617 aa16.64■□□□□ 0.25
TCOF1-209ENST00000506630 ADARB2Q9NS39 739 aaKnown RBP16.64■□□□□ 0.25
TCOF1-209ENST00000506630 LTBP1Q14766 1721 aa16.64■□□□□ 0.25
TCOF1-209ENST00000506630 PTPRCP08575 1304 aa16.64■□□□□ 0.25
TCOF1-209ENST00000506630 CA12O43570 354 aa16.63■□□□□ 0.25
TCOF1-209ENST00000506630 GCKRQ14397 625 aa16.63■□□□□ 0.25
TCOF1-209ENST00000506630 SF3B3Q15393 1217 aaKnown RBP16.63■□□□□ 0.25
TCOF1-209ENST00000506630 UBE3BQ7Z3V4 1068 aa16.63■□□□□ 0.25
TCOF1-209ENST00000506630 GPRC5DQ9NZD1 345 aa16.63■□□□□ 0.25
TCOF1-209ENST00000506630 BEND3Q5T5X7 828 aa16.62■□□□□ 0.25
TCOF1-209ENST00000506630 SUPT20HQ8NEM7 779 aa16.62■□□□□ 0.25
TCOF1-209ENST00000506630 CCDC85AQ96PX6 553 aaPredicted RBP16.62■□□□□ 0.25
TCOF1-209ENST00000506630 AOC2O75106 756 aa16.61■□□□□ 0.25
TCOF1-209ENST00000506630 CELF2O95319 508 aaKnown RBP16.61■□□□□ 0.25
TCOF1-209ENST00000506630 RGS19P49795 217 aa16.61■□□□□ 0.25
TCOF1-209ENST00000506630 AOC3Q16853 763 aa16.61■□□□□ 0.25
TCOF1-209ENST00000506630 CCDC152Q4G0S7 254 aa16.61■□□□□ 0.25
TCOF1-209ENST00000506630 SAPCD2Q86UD0 394 aa16.61■□□□□ 0.25
TCOF1-209ENST00000506630 TSKSQ9UJT2 592 aa16.61■□□□□ 0.25
TCOF1-209ENST00000506630 ZNRF3Q9ULT6 936 aa16.61■□□□□ 0.25
TCOF1-209ENST00000506630 H7C1W4 665 aa16.6■□□□□ 0.25
TCOF1-209ENST00000506630 BBOX1O75936 387 aa16.6■□□□□ 0.25
TCOF1-209ENST00000506630 CTSWP56202 376 aa16.6■□□□□ 0.25
TCOF1-209ENST00000506630 CXCL9Q07325 125 aa16.6■□□□□ 0.25
TCOF1-209ENST00000506630 CELF1Q92879 486 aaKnown RBP16.6■□□□□ 0.25
TCOF1-209ENST00000506630 HHIPL1Q96JK4 782 aa16.6■□□□□ 0.25
TCOF1-209ENST00000506630 SRCIN1Q9C0H9 1055 aa16.6■□□□□ 0.25
TCOF1-209ENST00000506630 ATP6V0A2Q9Y487 856 aa16.6■□□□□ 0.25
TCOF1-209ENST00000506630 THSD7BQ9C0I4 1608 aa16.59■□□□□ 0.25
TCOF1-209ENST00000506630 RARSP54136 660 aaKnown RBP16.59■□□□□ 0.25
TCOF1-209ENST00000506630 SEC31BQ9NQW1 1179 aa16.59■□□□□ 0.25
TCOF1-209ENST00000506630 ALDH1L1O75891 902 aa16.58■□□□□ 0.24
TCOF1-209ENST00000506630 GMPSP49915 693 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-209ENST00000506630 BRPF1P55201 1214 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-209ENST00000506630 CASP7P55210 303 aa16.58■□□□□ 0.24
TCOF1-209ENST00000506630 CIAPIN1Q6FI81 312 aa16.58■□□□□ 0.24
TCOF1-209ENST00000506630 TMC4Q7Z404 712 aa16.58■□□□□ 0.24
TCOF1-209ENST00000506630 SP8Q8IXZ3 490 aa16.58■□□□□ 0.24
TCOF1-209ENST00000506630 ZC3H15Q8WU90 426 aaKnown RBP16.58■□□□□ 0.24
TCOF1-209ENST00000506630 GLIS2Q9BZE0 524 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-209ENST00000506630 C9orf78Q9NZ63 289 aaPredicted RBP16.58■□□□□ 0.24
TCOF1-209ENST00000506630 NOB1Q9ULX3 412 aaKnown RBP16.58■□□□□ 0.24
TCOF1-209ENST00000506630 DUOX1Q9NRD9 1551 aa16.58■□□□□ 0.24
TCOF1-209ENST00000506630 A0A1B0GUL6 1792 aa16.58■□□□□ 0.24
TCOF1-209ENST00000506630 KIF16BQ96L93 1317 aa16.57■□□□□ 0.24
TCOF1-209ENST00000506630 TNIP1Q15025 636 aa16.57■□□□□ 0.24
TCOF1-209ENST00000506630 DPP8Q6V1X1 898 aaPredicted RBP16.57■□□□□ 0.24
TCOF1-209ENST00000506630 PLA2G12BQ9BX93 195 aa16.57■□□□□ 0.24
TCOF1-209ENST00000506630 MCOLN1Q9GZU1 580 aa16.57■□□□□ 0.24
TCOF1-209ENST00000506630 ZNF408Q9H9D4 720 aa16.57■□□□□ 0.24
TCOF1-209ENST00000506630 GRM8O00222 908 aa16.56■□□□□ 0.24
TCOF1-209ENST00000506630 RPS8P62241 208 aaKnown RBP16.56■□□□□ 0.24
TCOF1-209ENST00000506630 CDC37L1Q7L3B6 337 aa16.56■□□□□ 0.24
TCOF1-209ENST00000506630 TTLL11Q8NHH1 800 aa16.56■□□□□ 0.24
TCOF1-209ENST00000506630 RTFDC1Q9BY42 306 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-209ENST00000506630 GREM2Q9H772 168 aa16.56■□□□□ 0.24
TCOF1-209ENST00000506630 PGAP2Q9UHJ9 254 aa16.56■□□□□ 0.24
TCOF1-209ENST00000506630 KIAA2012Q0VF49 1180 aa16.55■□□□□ 0.24
TCOF1-209ENST00000506630 ANKRD18AQ8IVF6 992 aa16.55■□□□□ 0.24
TCOF1-209ENST00000506630 MPNDQ8N594 471 aa16.55■□□□□ 0.24
TCOF1-209ENST00000506630 CDC5LQ99459 802 aaKnown RBP16.55■□□□□ 0.24
TCOF1-209ENST00000506630 RTL9Q8NET4 1388 aa16.54■□□□□ 0.24
TCOF1-209ENST00000506630 H7C1D1 291 aa16.54■□□□□ 0.24
TCOF1-209ENST00000506630 RAD17O75943 681 aa16.54■□□□□ 0.24
TCOF1-209ENST00000506630 NOGQ13253 232 aa16.54■□□□□ 0.24
TCOF1-209ENST00000506630 DGKZQ13574 1117 aa16.54■□□□□ 0.24
TCOF1-209ENST00000506630 API5Q9BZZ5 524 aaKnown RBP16.54■□□□□ 0.24
TCOF1-209ENST00000506630 CHMP3Q9Y3E7 222 aa16.54■□□□□ 0.24
TCOF1-209ENST00000506630 TRPM7Q96QT4 1865 aa16.54■□□□□ 0.24
TCOF1-209ENST00000506630 YDJCA8MPS7 323 aa16.53■□□□□ 0.24
TCOF1-209ENST00000506630 BCAR3O75815 825 aa16.53■□□□□ 0.24
TCOF1-209ENST00000506630 CNOT7Q9UIV1 285 aaKnown RBP16.53■□□□□ 0.24
TCOF1-209ENST00000506630 SHTN1A0MZ66 631 aa16.52■□□□□ 0.24
TCOF1-209ENST00000506630 ITGA6P23229 1130 aa16.52■□□□□ 0.24
TCOF1-209ENST00000506630 HIRAP54198 1017 aaPredicted RBP16.52■□□□□ 0.24
TCOF1-209ENST00000506630 FRAT1Q92837 279 aaPredicted RBP16.52■□□□□ 0.24
TCOF1-209ENST00000506630 KCNQ5Q9NR82 932 aa16.52■□□□□ 0.24
TCOF1-209ENST00000506630 PCDH10Q9P2E7 1040 aa16.52■□□□□ 0.24
TCOF1-209ENST00000506630 NSFL1CQ9UNZ2 370 aaKnown RBP16.52■□□□□ 0.24
TCOF1-209ENST00000506630 WTIPA6NIX2 430 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-209ENST00000506630 NPM3O75607 178 aaKnown RBP16.51■□□□□ 0.23
TCOF1-209ENST00000506630 CSF1RP07333 972 aa16.51■□□□□ 0.23
TCOF1-209ENST00000506630 NBPF7P0C2Y1 421 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-209ENST00000506630 IGHMBP2P38935 993 aaKnown RBP16.51■□□□□ 0.23
TCOF1-209ENST00000506630 CCT4P50991 539 aaKnown RBP16.51■□□□□ 0.23
TCOF1-209ENST00000506630 HUNKP57058 714 aa16.51■□□□□ 0.23
TCOF1-209ENST00000506630 GPSM2P81274 684 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms