RNA–Protein interactions for RNA: ENST00000504220.6

PCDH11X-208, Transcript of protocadherin 11 X-linked, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH11X, Length 4,017 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH11X-208ENST00000504220 MSH6P52701 1360 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 NUTM2BA6NNL0 878 aaPredicted RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 NUTM2EB1AL46 878 aaPredicted RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 TPD52L2O43399 206 aaKnown RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 AP1G2O75843 785 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 ZNF445P59923 1031 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 SKOR2Q2VWA4 1001 aaPredicted RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 MFSD4BQ5TF39 518 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 VPS53Q5VIR6 699 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 NUTM2AQ8IVF1 878 aaPredicted RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 C17orf53Q8N3J3 647 aaPredicted RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 SNRNP27Q8WVK2 155 aaKnown RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 SLC12A5Q9H2X9 1139 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 KCNF1Q9H3M0 494 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 PDZRN3Q9UPQ7 1066 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 C1orf167Q5SNV9 1468 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 USP47Q96K76 1375 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 TULP4Q9NRJ4 1543 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 PLCH1Q4KWH8 1693 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 SMAPO00193 183 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 FIBPO43427 364 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 RAD21O60216 631 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 TOM1O60784 492 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 NEK4P51957 841 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 SYCP1Q15431 976 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 ANKARQ7Z5J8 1434 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 LSM14AQ8ND56 463 aaKnown RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 MICAL1Q8TDZ2 1067 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 RBM17Q96I25 401 aaKnown RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 SEZ6LQ9BYH1 1024 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 RBM28Q9NW13 759 aaKnown RBP4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 MON2Q7Z3U7 1717 aa4.31□□□□□ -1.72
PCDH11X-208ENST00000504220 FOXO3O43524 673 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 MCM5P33992 734 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 TLDC1Q6P9B6 456 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 CTR9Q6PD62 1173 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 SAPCD2Q86UD0 394 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 RPAP2Q8IXW5 612 aaPredicted RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 PDCL2Q8N4E4 241 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 TSR2Q969E8 191 aaKnown RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 CLIP3Q96DZ5 547 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 CDK19Q9BWU1 502 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 MCM8Q9UJA3 840 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 TUBGCP6Q96RT7 1819 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 WNK3Q9BYP7 1800 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 LRP6O75581 1613 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 RIOK3O14730 519 aaKnown RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 BDNFP23560 247 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 SSR1P43307 286 aaKnown RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 BTG3Q14201 252 aaPredicted RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 SHROOM1Q2M3G4 852 aaPredicted RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 RBM12BQ8IXT5 1001 aaKnown RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 DHRS1Q96LJ7 313 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 LARP6Q9BRS8 491 aaKnown RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 PRM3Q9NNZ6 103 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 MKS1Q9NXB0 559 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 UBAP1LF5GYI3 381 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 MARCH6O60337 910 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 FMNL1O95466 1100 aaPredicted RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 AIMP1Q12904 312 aaKnown RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 USP4Q13107 963 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 IRF5Q13568 498 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 CPLX2Q6PUV4 134 aaKnown RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 RPAINQ86UA6 219 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 PIBF1Q8WXW3 757 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 ERCC4Q92889 916 aaPredicted RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 IRAK4Q9NWZ3 460 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 C9orf78Q9NZ63 289 aaPredicted RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 CABP1Q9NZU7 370 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 F8VZ95 297 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 AP5Z1O43299 807 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 ZRANB2O95218 330 aaKnown RBP eCLIP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 GPATCH3Q96I76 525 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 PCMTD1Q96MG8 357 aaPredicted RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 NUCKS1Q9H1E3 243 aaKnown RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 C14orf93Q9H972 538 aaKnown RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 GPBP1L1Q9HC44 474 aaPredicted RBP4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 DDX19BQ9UMR2 479 aa4.3□□□□□ -1.72
PCDH11X-208ENST00000504220 CCDC66A2RUB6 948 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 AKNAD1Q5T1N1 836 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 MYSM1Q5VVJ2 828 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 TCP11L2Q8N4U5 519 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 DDX54Q8TDD1 881 aaKnown RBP4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 DDX17Q92841 729 aaKnown RBP4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 CCDC97Q96F63 343 aaPredicted RBP4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 SDF4Q9BRK5 362 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 TRIM5Q9C035 493 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 RMI1Q9H9A7 625 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 A1CFQ9NQ94 594 aaKnown RBP4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 TRPV5Q9NQA5 729 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 EVC2Q86UK5 1308 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 ERICH4A6NGS2 130 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 CPLX1O14810 134 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 MYL1P05976 194 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 ZKSCAN1P17029 563 aaPredicted RBP4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 MTHFSP49914 203 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 JAKMIP3Q5VZ66 844 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 PDILTQ8N807 584 aa4.29□□□□□ -1.72
PCDH11X-208ENST00000504220 MNS1Q8NEH6 495 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms