RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 MED4Q9NPJ6 270 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 IMPACTQ9P2X3 320 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 MKRN1Q9UHC7 482 aaKnown RBP10.61□□□□□ -0.71
HPS4-217ENST00000496385 SMC3Q9UQE7 1217 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 FLT4P35916 1363 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 NRAPQ86VF7 1730 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 RGPD2P0DJD1 1756 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 EFCAB8A8MWE9 144 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 SNW1Q13573 536 aaKnown RBP10.61□□□□□ -0.71
HPS4-217ENST00000496385 CCDC144BQ3MJ40 725 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 CCDC144CPQ8IYA2 1237 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 GJD4Q96KN9 370 aaPredicted RBP10.61□□□□□ -0.71
HPS4-217ENST00000496385 LCMT1Q9UIC8 334 aa10.61□□□□□ -0.71
HPS4-217ENST00000496385 POLR3GO15318 223 aaPredicted RBP10.6□□□□□ -0.71
HPS4-217ENST00000496385 HMMRO75330 724 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 CASTP20810 708 aaKnown RBP10.6□□□□□ -0.71
HPS4-217ENST00000496385 OAS2P29728 719 aaKnown RBP10.6□□□□□ -0.71
HPS4-217ENST00000496385 ZNF165P49910 485 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 PDE1AP54750 535 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 GNAI1P63096 354 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 CCZ1BP86790 482 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 CCZ1P86791 482 aaPredicted RBP10.6□□□□□ -0.71
HPS4-217ENST00000496385 SMC1AQ14683 1233 aaKnown RBP10.6□□□□□ -0.71
HPS4-217ENST00000496385 NBPF6Q5VWK0 638 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 REXO1L1PQ8IX06 675 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 NBPF4Q96M43 638 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 LIMCH1Q9UPQ0 1083 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 TUBGCP6Q96RT7 1819 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 PHLPP2Q6ZVD8 1323 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 USP27XA6NNY8 438 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 MYCNP04198 464 aaPredicted RBP10.6□□□□□ -0.71
HPS4-217ENST00000496385 KRT85P78386 507 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 ST5P78524 1137 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 EIF4A2Q14240 407 aaKnown RBP10.6□□□□□ -0.71
HPS4-217ENST00000496385 VPS72Q15906 364 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 FAM182BQ5T319 152 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 TACO1Q9BSH4 297 aaKnown RBP10.6□□□□□ -0.71
HPS4-217ENST00000496385 NWD2Q9ULI1 1742 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 WDR17Q8IZU2 1322 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 NRDCO43847 1150 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 FCHSD2O94868 740 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 RXRBP28702 533 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 HSPA4P34932 840 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 GYS2P54840 703 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 JAKMIP3Q5VZ66 844 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 MCTP2Q6DN12 878 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 CEP85Q6P2H3 762 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 CHMP4CQ96CF2 233 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 CLSTN2Q9H4D0 955 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 PALD1Q9ULE6 856 aa10.6□□□□□ -0.71
HPS4-217ENST00000496385 GOLGA6L19H0YKK7 550 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 SATB1Q01826 763 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 ILDR2Q71H61 639 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 OTUD7AQ8TE49 926 aaPredicted RBP10.59□□□□□ -0.71
HPS4-217ENST00000496385 ZSCAN31Q96LW9 406 aaPredicted RBP10.59□□□□□ -0.71
HPS4-217ENST00000496385 SCAND2PQ9GZW5 306 aaPredicted RBP10.59□□□□□ -0.71
HPS4-217ENST00000496385 ADAM21Q9UKJ8 722 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 ATRNO75882 1429 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 SPATA31A1Q5TZJ5 1347 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 SPATA31A5Q5VU36 1347 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 SPATA31A7Q8IWB4 1347 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 CCDC196A0A1B0GTZ2 297 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 CCDC69A6NI79 296 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 TRDNQ13061 729 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 CT47A1Q5JQC4 288 aaPredicted RBP10.59□□□□□ -0.71
HPS4-217ENST00000496385 FAM107BQ9H098 131 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 OSBPL5Q9H0X9 879 aaPredicted RBP10.59□□□□□ -0.71
HPS4-217ENST00000496385 CXorf56Q9H5V9 222 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 MTMR6Q9Y217 621 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 GLI3P10071 1580 aa10.59□□□□□ -0.71
HPS4-217ENST00000496385 TBC1D8O95759 1140 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 CHMLP26374 656 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 CORO7P57737 925 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 DNM1Q05193 864 aaKnown RBP10.58□□□□□ -0.72
HPS4-217ENST00000496385 MMS22LQ6ZRQ5 1243 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 PACS2Q86VP3 889 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 GPR161Q8N6U8 529 aaKnown RBP10.58□□□□□ -0.72
HPS4-217ENST00000496385 TTC14Q96N46 770 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 TMX1Q9H3N1 280 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 SH2B1Q9NRF2 756 aaPredicted RBP10.58□□□□□ -0.72
HPS4-217ENST00000496385 CRB1P82279 1406 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 HMOX1P09601 288 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 ANO2Q9NQ90 1003 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 TTC41PQ6P2S7 1318 aa10.58□□□□□ -0.72
HPS4-217ENST00000496385 ZRSR1Q15695 479 aaKnown RBP10.57□□□□□ -0.72
HPS4-217ENST00000496385 CC2D1AQ6P1N0 951 aaPredicted RBP10.57□□□□□ -0.72
HPS4-217ENST00000496385 EFCAB13Q8IY85 973 aa10.57□□□□□ -0.72
HPS4-217ENST00000496385 CCDC150Q8NCX0 1101 aa10.57□□□□□ -0.72
HPS4-217ENST00000496385 DRC1Q96MC2 740 aa10.57□□□□□ -0.72
HPS4-217ENST00000496385 EYA1Q99502 592 aa10.57□□□□□ -0.72
HPS4-217ENST00000496385 AOX1Q06278 1338 aa10.57□□□□□ -0.72
HPS4-217ENST00000496385 ZNF853P0CG23 659 aa10.57□□□□□ -0.72
HPS4-217ENST00000496385 ATP6V1AP38606 617 aa10.57□□□□□ -0.72
HPS4-217ENST00000496385 ARFGAP3Q9NP61 516 aa10.57□□□□□ -0.72
HPS4-217ENST00000496385 EXOC6BQ9Y2D4 811 aa10.57□□□□□ -0.72
HPS4-217ENST00000496385 EIF3CLB5ME19 914 aaKnown RBP10.56□□□□□ -0.72
HPS4-217ENST00000496385 CTAGE5O15320 804 aa10.56□□□□□ -0.72
HPS4-217ENST00000496385 TADA3O75528 432 aa10.56□□□□□ -0.72
HPS4-217ENST00000496385 ETF1P62495 437 aaKnown RBP10.56□□□□□ -0.72
HPS4-217ENST00000496385 IQCB1Q15051 598 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms