RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 ZNF609O15014 1411 aa11.44□□□□□ -0.58
NPHP3-209ENST00000493732 A0A1B0GUL7 405 aa11.43□□□□□ -0.58
NPHP3-209ENST00000493732 RNF113AO15541 343 aaKnown RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 FIBPO43427 364 aa11.43□□□□□ -0.58
NPHP3-209ENST00000493732 FGD1P98174 961 aa11.43□□□□□ -0.58
NPHP3-209ENST00000493732 FOXD4L6Q3SYB3 417 aaPredicted RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 FOXD4L3Q6VB84 417 aaPredicted RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 DDX46Q7L014 1031 aaKnown RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 DHX32Q7L7V1 743 aaKnown RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 NECAB1Q8N987 351 aa11.43□□□□□ -0.58
NPHP3-209ENST00000493732 GTF3C6Q969F1 213 aa11.43□□□□□ -0.58
NPHP3-209ENST00000493732 ZSCAN16Q9H4T2 348 aaPredicted RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 NOL7Q9UMY1 257 aaKnown RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 CDHR2Q9BYE9 1310 aa11.43□□□□□ -0.58
NPHP3-209ENST00000493732 TJP1Q07157 1748 aa11.43□□□□□ -0.58
NPHP3-209ENST00000493732 GOLIM4O00461 696 aa11.43□□□□□ -0.58
NPHP3-209ENST00000493732 HMGN5P82970 282 aaKnown RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 DNM1Q05193 864 aaKnown RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 GORABQ5T7V8 394 aa11.43□□□□□ -0.58
NPHP3-209ENST00000493732 ZBTB38Q8NAP3 1195 aaPredicted RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 EDC3Q96F86 508 aaKnown RBP11.43□□□□□ -0.58
NPHP3-209ENST00000493732 GOLGA6L4A6NEF3 574 aa11.42□□□□□ -0.58
NPHP3-209ENST00000493732 CYP21A2P08686 494 aa11.42□□□□□ -0.58
NPHP3-209ENST00000493732 ST3GAL1Q11201 340 aa11.42□□□□□ -0.58
NPHP3-209ENST00000493732 IFIT5Q13325 482 aaKnown RBP11.42□□□□□ -0.58
NPHP3-209ENST00000493732 TAF7LQ5H9L4 462 aa11.42□□□□□ -0.58
NPHP3-209ENST00000493732 NHSL1Q5SYE7 1610 aa11.42□□□□□ -0.58
NPHP3-209ENST00000493732 SHANK3Q9BYB0 1731 aa11.42□□□□□ -0.58
NPHP3-209ENST00000493732 CSF1RP07333 972 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 HSP90B1P14625 803 aaKnown RBP11.41□□□□□ -0.58
NPHP3-209ENST00000493732 TIMM10P62072 90 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 TTC39AQ5SRH9 613 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 ATL3Q6DD88 541 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 GIGYF2Q6Y7W6 1299 aaKnown RBP11.41□□□□□ -0.58
NPHP3-209ENST00000493732 Q6ZUG5 572 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 FBXL16Q8N461 479 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 STRCQ7RTU9 1775 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 MAP3K15Q6ZN16 1313 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 PFKFB2O60825 505 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 ZSCAN25Q6NSZ9 544 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 AGXT2Q9BYV1 514 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 CFAP45Q9UL16 551 aa11.41□□□□□ -0.58
NPHP3-209ENST00000493732 TCHHQ07283 1943 aa11.4□□□□□ -0.58
NPHP3-209ENST00000493732 H3BQV1 296 aa11.4□□□□□ -0.58
NPHP3-209ENST00000493732 ZNF500O60304 480 aaPredicted RBP11.4□□□□□ -0.58
NPHP3-209ENST00000493732 KCNA4P22459 653 aa11.4□□□□□ -0.58
NPHP3-209ENST00000493732 LRRC24Q50LG9 513 aa11.4□□□□□ -0.58
NPHP3-209ENST00000493732 IFFO2Q5TF58 517 aa11.4□□□□□ -0.58
NPHP3-209ENST00000493732 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.4□□□□□ -0.58
NPHP3-209ENST00000493732 ZNF512BQ96KM6 892 aaPredicted RBP11.4□□□□□ -0.58
NPHP3-209ENST00000493732 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.4□□□□□ -0.58
NPHP3-209ENST00000493732 LRP6O75581 1613 aa11.4□□□□□ -0.59
NPHP3-209ENST00000493732 ZNF335Q9H4Z2 1342 aaPredicted RBP11.4□□□□□ -0.59
NPHP3-209ENST00000493732 CCDC192P0DO97 292 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 HSPD1P10809 573 aaKnown RBP11.39□□□□□ -0.59
NPHP3-209ENST00000493732 NAA16Q6N069 864 aaPredicted RBP11.39□□□□□ -0.59
NPHP3-209ENST00000493732 PIGBQ92521 554 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 ZNF274Q96GC6 653 aaPredicted RBP11.39□□□□□ -0.59
NPHP3-209ENST00000493732 SPATA32Q96LK8 384 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 AK7Q96M32 723 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 SEC62Q99442 399 aaKnown RBP11.39□□□□□ -0.59
NPHP3-209ENST00000493732 CDCA7Q9BWT1 371 aaPredicted RBP11.39□□□□□ -0.59
NPHP3-209ENST00000493732 DDX19AQ9NUU7 478 aaKnown RBP11.39□□□□□ -0.59
NPHP3-209ENST00000493732 ZKSCAN5Q9Y2L8 839 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 ERVV-1B6SEH8 477 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 EXOSC10Q01780 885 aaKnown RBP11.39□□□□□ -0.59
NPHP3-209ENST00000493732 TTF1Q15361 905 aaPredicted RBP11.39□□□□□ -0.59
NPHP3-209ENST00000493732 CCDC129Q6ZRS4 1044 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 CDC37L1Q7L3B6 337 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 DNAJC10Q8IXB1 793 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 RNF214Q8ND24 703 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 SMARCC2Q8TAQ2 1214 aa11.39□□□□□ -0.59
NPHP3-209ENST00000493732 ANKRD18BA2A2Z9 1011 aa11.38□□□□□ -0.59
NPHP3-209ENST00000493732 DHX16O60231 1041 aaKnown RBP11.38□□□□□ -0.59
NPHP3-209ENST00000493732 PTMAP06454 111 aaKnown RBP11.38□□□□□ -0.59
NPHP3-209ENST00000493732 TERF1P54274 439 aa11.38□□□□□ -0.59
NPHP3-209ENST00000493732 STK3Q13188 491 aa11.38□□□□□ -0.59
NPHP3-209ENST00000493732 IMMTQ16891 758 aaKnown RBP11.38□□□□□ -0.59
NPHP3-209ENST00000493732 RGS22Q8NE09 1264 aa11.38□□□□□ -0.59
NPHP3-209ENST00000493732 BRF1Q92994 677 aa11.38□□□□□ -0.59
NPHP3-209ENST00000493732 XAGE2Q96GT9 111 aa11.38□□□□□ -0.59
NPHP3-209ENST00000493732 ZNF594Q96JF6 807 aaPredicted RBP11.38□□□□□ -0.59
NPHP3-209ENST00000493732 TCEANC2Q96MN5 208 aa11.38□□□□□ -0.59
NPHP3-209ENST00000493732 NAP1L5Q96NT1 182 aaPredicted RBP11.38□□□□□ -0.59
NPHP3-209ENST00000493732 BTG4Q9NY30 223 aa11.38□□□□□ -0.59
NPHP3-209ENST00000493732 MAST3O60307 1309 aa11.38□□□□□ -0.59
NPHP3-209ENST00000493732 COL14A1Q05707 1796 aaKnown RBP11.38□□□□□ -0.59
NPHP3-209ENST00000493732 E7EWF7 191 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 EXOC5O00471 708 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 BCL9O00512 1426 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 CAVIN2O95810 425 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 TPM3P06753 285 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 FKBP4Q02790 459 aaKnown RBP eCLIP11.37□□□□□ -0.59
NPHP3-209ENST00000493732 MAP3K11Q16584 847 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 APPBP2Q92624 585 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 NUP62CLQ9H1M0 184 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 ASAP1Q9ULH1 1129 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 ZNF330Q9Y3S2 320 aaPredicted RBP11.37□□□□□ -0.59
NPHP3-209ENST00000493732 TOGARAM1Q9Y4F4 1720 aa11.37□□□□□ -0.59
NPHP3-209ENST00000493732 TAF6LQ9Y6J9 622 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms