RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 HPS5Q9UPZ3 1129 aa18.71■□□□□ 0.59
PRPF40A-211ENST00000493468 C6orf229H3BNL8 230 aa18.7■□□□□ 0.58
PRPF40A-211ENST00000493468 VIL1P09327 827 aaKnown RBP18.7■□□□□ 0.58
PRPF40A-211ENST00000493468 GPSM2P81274 684 aa18.7■□□□□ 0.58
PRPF40A-211ENST00000493468 RBM26Q5T8P6 1007 aaKnown RBP18.7■□□□□ 0.58
PRPF40A-211ENST00000493468 CELF1Q92879 486 aaKnown RBP18.7■□□□□ 0.58
PRPF40A-211ENST00000493468 RIMBP2O15034 1052 aa18.69■□□□□ 0.58
PRPF40A-211ENST00000493468 AIMP1Q12904 312 aaKnown RBP18.69■□□□□ 0.58
PRPF40A-211ENST00000493468 KCNQ5Q9NR82 932 aa18.69■□□□□ 0.58
PRPF40A-211ENST00000493468 ZNF280AP59817 542 aaPredicted RBP18.68■□□□□ 0.58
PRPF40A-211ENST00000493468 NOM1Q5C9Z4 860 aaKnown RBP18.68■□□□□ 0.58
PRPF40A-211ENST00000493468 TBC1D16Q8TBP0 767 aa18.68■□□□□ 0.58
PRPF40A-211ENST00000493468 NECTIN2Q92692 538 aa18.68■□□□□ 0.58
PRPF40A-211ENST00000493468 PODXL2Q9NZ53 605 aa18.68■□□□□ 0.58
PRPF40A-211ENST00000493468 PITPNM2Q9BZ72 1349 aa18.68■□□□□ 0.58
PRPF40A-211ENST00000493468 DOK7Q18PE1 504 aa18.67■□□□□ 0.58
PRPF40A-211ENST00000493468 AGBL3Q8NEM8 1001 aa18.67■□□□□ 0.58
PRPF40A-211ENST00000493468 ISCA1Q9BUE6 129 aa18.67■□□□□ 0.58
PRPF40A-211ENST00000493468 PLBD2Q8NHP8 589 aa18.66■□□□□ 0.58
PRPF40A-211ENST00000493468 ASTN2O75129 1339 aaPredicted RBP18.66■□□□□ 0.58
PRPF40A-211ENST00000493468 ANGEL2Q5VTE6 544 aaKnown RBP18.65■□□□□ 0.58
PRPF40A-211ENST00000493468 FAM89AQ96GI7 184 aa18.65■□□□□ 0.58
PRPF40A-211ENST00000493468 ZC3H12CQ9C0D7 883 aaKnown RBP18.65■□□□□ 0.58
PRPF40A-211ENST00000493468 RPS8P62241 208 aaKnown RBP18.64■□□□□ 0.57
PRPF40A-211ENST00000493468 LMOD3Q0VAK6 560 aa18.64■□□□□ 0.57
PRPF40A-211ENST00000493468 SCARF1Q14162 830 aa18.64■□□□□ 0.57
PRPF40A-211ENST00000493468 RSBN1LQ6PCB5 846 aaPredicted RBP18.64■□□□□ 0.57
PRPF40A-211ENST00000493468 ZNF296Q8WUU4 475 aaPredicted RBP18.64■□□□□ 0.57
PRPF40A-211ENST00000493468 GCC1Q96CN9 775 aa18.64■□□□□ 0.57
PRPF40A-211ENST00000493468 HDAC9Q9UKV0 1011 aa18.64■□□□□ 0.57
PRPF40A-211ENST00000493468 RIPK4P57078 832 aa18.63■□□□□ 0.57
PRPF40A-211ENST00000493468 TRIM28Q13263 835 aaKnown RBP18.63■□□□□ 0.57
PRPF40A-211ENST00000493468 ZNF646O15015 1829 aaPredicted RBP18.63■□□□□ 0.57
PRPF40A-211ENST00000493468 FBXO46Q6PJ61 603 aaPredicted RBP18.62■□□□□ 0.57
PRPF40A-211ENST00000493468 ANKRD13DQ6ZTN6 518 aa18.62■□□□□ 0.57
PRPF40A-211ENST00000493468 GMLQ99445 158 aa18.62■□□□□ 0.57
PRPF40A-211ENST00000493468 CFHR5Q9BXR6 569 aa18.62■□□□□ 0.57
PRPF40A-211ENST00000493468 CHPF2Q9P2E5 772 aa18.62■□□□□ 0.57
PRPF40A-211ENST00000493468 IRS4O14654 1257 aaPredicted RBP18.61■□□□□ 0.57
PRPF40A-211ENST00000493468 UFL1O94874 794 aa18.61■□□□□ 0.57
PRPF40A-211ENST00000493468 HOXB7P09629 217 aa18.61■□□□□ 0.57
PRPF40A-211ENST00000493468 TM4SF4P48230 202 aa18.61■□□□□ 0.57
PRPF40A-211ENST00000493468 MYOZ2Q9NPC6 264 aa18.61■□□□□ 0.57
PRPF40A-211ENST00000493468 GGA1Q9UJY5 639 aa18.61■□□□□ 0.57
PRPF40A-211ENST00000493468 LAMB1P07942 1786 aa18.6■□□□□ 0.57
PRPF40A-211ENST00000493468 RBBP6Q7Z6E9 1792 aaKnown RBP18.6■□□□□ 0.57
PRPF40A-211ENST00000493468 G3V3G9 751 aa18.6■□□□□ 0.57
PRPF40A-211ENST00000493468 USP17L8P0C7I0 530 aa18.6■□□□□ 0.57
PRPF40A-211ENST00000493468 HSP90B1P14625 803 aaKnown RBP18.6■□□□□ 0.57
PRPF40A-211ENST00000493468 DCAF8Q5TAQ9 597 aa18.6■□□□□ 0.57
PRPF40A-211ENST00000493468 ATP5J2-PTCD1G3V325 749 aa18.59■□□□□ 0.57
PRPF40A-211ENST00000493468 GPR25O00155 361 aa18.59■□□□□ 0.57
PRPF40A-211ENST00000493468 CHL1O00533 1208 aa18.59■□□□□ 0.57
PRPF40A-211ENST00000493468 TBC1D8O95759 1140 aa18.59■□□□□ 0.57
PRPF40A-211ENST00000493468 TMPOP42166 694 aaKnown RBP18.59■□□□□ 0.57
PRPF40A-211ENST00000493468 ANKIB1Q9P2G1 1089 aa18.59■□□□□ 0.57
PRPF40A-211ENST00000493468 DBF4Q9UBU7 674 aaPredicted RBP18.59■□□□□ 0.57
PRPF40A-211ENST00000493468 HDGFL1Q5TGJ6 251 aa18.58■□□□□ 0.56
PRPF40A-211ENST00000493468 ZNF428Q96B54 188 aa18.58■□□□□ 0.56
PRPF40A-211ENST00000493468 HTTP42858 3142 aa18.58■□□□□ 0.56
PRPF40A-211ENST00000493468 SREBF2Q12772 1141 aa18.57■□□□□ 0.56
PRPF40A-211ENST00000493468 KRT24Q2M2I5 525 aa18.57■□□□□ 0.56
PRPF40A-211ENST00000493468 MOB2Q70IA6 237 aa18.57■□□□□ 0.56
PRPF40A-211ENST00000493468 PODNQ7Z5L7 613 aa18.57■□□□□ 0.56
PRPF40A-211ENST00000493468 ZBTB38Q8NAP3 1195 aaPredicted RBP18.57■□□□□ 0.56
PRPF40A-211ENST00000493468 XDHP47989 1333 aa18.56■□□□□ 0.56
PRPF40A-211ENST00000493468 USP17L3A6NCW0 530 aa18.56■□□□□ 0.56
PRPF40A-211ENST00000493468 USP17L4A6NCW7 530 aa18.56■□□□□ 0.56
PRPF40A-211ENST00000493468 UBE2Q2LH0YL09 131 aa18.56■□□□□ 0.56
PRPF40A-211ENST00000493468 USP17L1Q7RTZ2 530 aa18.56■□□□□ 0.56
PRPF40A-211ENST00000493468 SEC31BQ9NQW1 1179 aa18.56■□□□□ 0.56
PRPF40A-211ENST00000493468 HYPKQ9NX55 129 aa18.56■□□□□ 0.56
PRPF40A-211ENST00000493468 MKI67P46013 3256 aaKnown RBP18.56■□□□□ 0.56
PRPF40A-211ENST00000493468 FKTNO75072 461 aa18.55■□□□□ 0.56
PRPF40A-211ENST00000493468 CCDC152Q4G0S7 254 aa18.55■□□□□ 0.56
PRPF40A-211ENST00000493468 RTL5Q5HYW3 569 aaPredicted RBP18.55■□□□□ 0.56
PRPF40A-211ENST00000493468 NF2P35240 595 aa18.54■□□□□ 0.56
PRPF40A-211ENST00000493468 MMP14P50281 582 aa18.54■□□□□ 0.56
PRPF40A-211ENST00000493468 MYH3P11055 1940 aa18.54■□□□□ 0.56
PRPF40A-211ENST00000493468 MED23Q9ULK4 1368 aa18.54■□□□□ 0.56
PRPF40A-211ENST00000493468 ATP2B4P23634 1241 aa18.53■□□□□ 0.56
PRPF40A-211ENST00000493468 MYO3BQ8WXR4 1341 aa18.52■□□□□ 0.56
PRPF40A-211ENST00000493468 SPEF2Q9C093 1822 aa18.52■□□□□ 0.56
PRPF40A-211ENST00000493468 ALDH1A1P00352 501 aa18.52■□□□□ 0.56
PRPF40A-211ENST00000493468 TTLL12Q14166 644 aaPredicted RBP18.52■□□□□ 0.56
PRPF40A-211ENST00000493468 NBPF9Q3BBW0 867 aa18.52■□□□□ 0.56
PRPF40A-211ENST00000493468 HABP4Q5JVS0 413 aaKnown RBP18.52■□□□□ 0.56
PRPF40A-211ENST00000493468 COL1A1P02452 1464 aaPredicted RBP18.52■□□□□ 0.55
PRPF40A-211ENST00000493468 PDE8AO60658 829 aa18.51■□□□□ 0.55
PRPF40A-211ENST00000493468 PCCAP05165 728 aaPredicted RBP18.51■□□□□ 0.55
PRPF40A-211ENST00000493468 INTS3Q68E01 1043 aaKnown RBP18.51■□□□□ 0.55
PRPF40A-211ENST00000493468 ANKRD18AQ8IVF6 992 aa18.51■□□□□ 0.55
PRPF40A-211ENST00000493468 CCDC191Q8NCU4 936 aa18.51■□□□□ 0.55
PRPF40A-211ENST00000493468 SCAF8Q9UPN6 1271 aaKnown RBP18.51■□□□□ 0.55
PRPF40A-211ENST00000493468 WNT10BO00744 389 aa18.5■□□□□ 0.55
PRPF40A-211ENST00000493468 GOLGA2Q08379 1002 aa18.5■□□□□ 0.55
PRPF40A-211ENST00000493468 DACT2Q5SW24 774 aa18.5■□□□□ 0.55
PRPF40A-211ENST00000493468 PRAMEF18Q5VWM3 479 aa18.5■□□□□ 0.55
PRPF40A-211ENST00000493468 ARMC9Q7Z3E5 817 aa18.5■□□□□ 0.55
PRPF40A-211ENST00000493468 OGFOD1Q8N543 542 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms