RNA–Protein interactions for RNA: ENST00000492423.5

COPS7B-222, Transcript of COP9 signalosome subunit 7B, human

TSL 2

Gene COPS7B, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-222	ENST00000492423	ST5	P78524	1137 aa		18.35	■□□□□ 0.53
COPS7B-222	ENST00000492423	TFCP2	Q12800	502 aa		18.35	■□□□□ 0.53
COPS7B-222	ENST00000492423	TAF7L	Q5H9L4	462 aa		18.35	■□□□□ 0.53
COPS7B-222	ENST00000492423	NLRP3	Q96P20	1036 aa		18.35	■□□□□ 0.53
COPS7B-222	ENST00000492423	RIPOR2	Q9Y4F9	1068 aa		18.35	■□□□□ 0.53
COPS7B-222	ENST00000492423	DLEC1	Q9Y238	1755 aa		18.35	■□□□□ 0.53
COPS7B-222	ENST00000492423	NPHP1	O15259	732 aa		18.34	■□□□□ 0.53
COPS7B-222	ENST00000492423	EAF2	Q96CJ1	260 aa	Predicted RBP	18.34	■□□□□ 0.53
COPS7B-222	ENST00000492423	BCL11A	Q9H165	835 aa		18.34	■□□□□ 0.53
COPS7B-222	ENST00000492423	PDE1A	P54750	535 aa		18.33	■□□□□ 0.52
COPS7B-222	ENST00000492423	CLASRP	Q8N2M8	674 aa	Known RBP	18.33	■□□□□ 0.52
COPS7B-222	ENST00000492423	OSBPL3	Q9H4L5	887 aa		18.33	■□□□□ 0.52
COPS7B-222	ENST00000492423	PARP3	Q9Y6F1	533 aa		18.33	■□□□□ 0.52
COPS7B-222	ENST00000492423	MX1	P20591	662 aa		18.32	■□□□□ 0.52
COPS7B-222	ENST00000492423	CRY2	Q49AN0	593 aa		18.32	■□□□□ 0.52
COPS7B-222	ENST00000492423	TNNI3K	Q59H18	835 aa		18.32	■□□□□ 0.52
COPS7B-222	ENST00000492423	LDHAL6A	Q6ZMR3	332 aa		18.32	■□□□□ 0.52
COPS7B-222	ENST00000492423	AACS	Q86V21	672 aa		18.32	■□□□□ 0.52
COPS7B-222	ENST00000492423	CDC5L	Q99459	802 aa	Known RBP	18.32	■□□□□ 0.52
COPS7B-222	ENST00000492423	GPR108	Q9NPR9	543 aa		18.32	■□□□□ 0.52
COPS7B-222	ENST00000492423	STAP2	Q9UGK3	403 aa		18.32	■□□□□ 0.52
COPS7B-222	ENST00000492423	FPGT-TNNI3K	V9GXZ4	949 aa		18.32	■□□□□ 0.52
COPS7B-222	ENST00000492423	AOX1	Q06278	1338 aa		18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	KLRG2	A4D1S0	409 aa	Predicted RBP	18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	PITPNM1	O00562	1244 aa		18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	TTC22	Q5TAA0	569 aa		18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	VGLL2	Q8N8G2	317 aa		18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	SLC16A10	Q8TF71	515 aa		18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	CELF1	Q92879	486 aa	Known RBP	18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	CNNM1	Q9NRU3	951 aa		18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	TLR7	Q9NYK1	1049 aa	Known RBP	18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	KIAA1551	Q9HCM1	1747 aa		18.31	■□□□□ 0.52
COPS7B-222	ENST00000492423	GSPT1	P15170	499 aa	Known RBP	18.3	■□□□□ 0.52
COPS7B-222	ENST00000492423	IGHMBP2	P38935	993 aa	Known RBP	18.3	■□□□□ 0.52
COPS7B-222	ENST00000492423	TSHZ3	Q63HK5	1081 aa		18.3	■□□□□ 0.52
COPS7B-222	ENST00000492423	ANKRD18A	Q8IVF6	992 aa		18.29	■□□□□ 0.52
COPS7B-222	ENST00000492423	CCDC8	Q9H0W5	538 aa	Predicted RBP	18.29	■□□□□ 0.52
COPS7B-222	ENST00000492423	CEP126	Q9P2H0	1117 aa		18.29	■□□□□ 0.52
COPS7B-222	ENST00000492423	C10orf71	Q711Q0	1435 aa		18.29	■□□□□ 0.52
COPS7B-222	ENST00000492423	LTBP1	Q14766	1721 aa		18.29	■□□□□ 0.52
COPS7B-222	ENST00000492423	MROH5	Q6ZUA9	1318 aa		18.28	■□□□□ 0.52
COPS7B-222	ENST00000492423	IFIT2	P09913	472 aa	Known RBP	18.28	■□□□□ 0.52
COPS7B-222	ENST00000492423	BMP2KL	Q5H9B9	411 aa		18.28	■□□□□ 0.52
COPS7B-222	ENST00000492423	METTL24	Q5JXM2	366 aa		18.28	■□□□□ 0.52
COPS7B-222	ENST00000492423	PI4K2B	Q8TCG2	481 aa		18.28	■□□□□ 0.52
COPS7B-222	ENST00000492423	MPHOSPH8	Q99549	860 aa		18.28	■□□□□ 0.52
COPS7B-222	ENST00000492423	BRIP1	Q9BX63	1249 aa		18.28	■□□□□ 0.52
COPS7B-222	ENST00000492423	DBNL	Q9UJU6	430 aa	Known RBP	18.28	■□□□□ 0.52
COPS7B-222	ENST00000492423	AKAP11	Q9UKA4	1901 aa		18.27	■□□□□ 0.52
COPS7B-222	ENST00000492423	TTC41P	Q6P2S7	1318 aa		18.27	■□□□□ 0.52
COPS7B-222	ENST00000492423	C8orf34	Q49A92	452 aa		18.27	■□□□□ 0.52
COPS7B-222	ENST00000492423	DDX46	Q7L014	1031 aa	Known RBP	18.27	■□□□□ 0.52
COPS7B-222	ENST00000492423	BSDC1	Q9NW68	430 aa	Predicted RBP	18.27	■□□□□ 0.52
COPS7B-222	ENST00000492423		A0A1B0GUL7	405 aa		18.26	■□□□□ 0.51
COPS7B-222	ENST00000492423	HOXA10	P31260	410 aa	Predicted RBP	18.26	■□□□□ 0.51
COPS7B-222	ENST00000492423	RPS8	P62241	208 aa	Known RBP	18.26	■□□□□ 0.51
COPS7B-222	ENST00000492423	GRAP	Q13588	217 aa		18.26	■□□□□ 0.51
COPS7B-222	ENST00000492423	R3HDM1	Q15032	1099 aa	Known RBP	18.26	■□□□□ 0.51
COPS7B-222	ENST00000492423	GRAPL	Q8TC17	118 aa	Predicted RBP	18.26	■□□□□ 0.51
COPS7B-222	ENST00000492423	RPGR	Q92834	1020 aa	Known RBP	18.26	■□□□□ 0.51
COPS7B-222	ENST00000492423	DBNDD2	Q9BQY9	259 aa		18.26	■□□□□ 0.51
COPS7B-222	ENST00000492423	MYH13	Q9UKX3	1938 aa		18.25	■□□□□ 0.51
COPS7B-222	ENST00000492423	PDE8B	O95263	885 aa		18.25	■□□□□ 0.51
COPS7B-222	ENST00000492423	FGFR2	P21802	821 aa		18.25	■□□□□ 0.51
COPS7B-222	ENST00000492423	CHRND	Q07001	517 aa		18.25	■□□□□ 0.51
COPS7B-222	ENST00000492423	ECHDC1	Q9NTX5	307 aa		18.25	■□□□□ 0.51
COPS7B-222	ENST00000492423	PSD	A5PKW4	1024 aa	Predicted RBP	18.24	■□□□□ 0.51
COPS7B-222	ENST00000492423	TIMM10	P62072	90 aa		18.24	■□□□□ 0.51
COPS7B-222	ENST00000492423	ATP2B3	Q16720	1220 aa		18.24	■□□□□ 0.51
COPS7B-222	ENST00000492423	HELB	Q8NG08	1087 aa	Predicted RBP	18.24	■□□□□ 0.51
COPS7B-222	ENST00000492423	RBM17	Q96I25	401 aa	Known RBP	18.24	■□□□□ 0.51
COPS7B-222	ENST00000492423	CRAMP1	Q96RY5	1269 aa		18.24	■□□□□ 0.51
COPS7B-222	ENST00000492423	AKAP2	Q9Y2D5	859 aa		18.24	■□□□□ 0.51
COPS7B-222	ENST00000492423	SLX4	Q8IY92	1834 aa		18.23	■□□□□ 0.51
COPS7B-222	ENST00000492423	BRCA1	P38398	1863 aa	Known RBP	18.23	■□□□□ 0.51
COPS7B-222	ENST00000492423	ADORA1	P30542	326 aa		18.23	■□□□□ 0.51
COPS7B-222	ENST00000492423	PDE6B	P35913	854 aa		18.23	■□□□□ 0.51
COPS7B-222	ENST00000492423	SLC51A	Q86UW1	340 aa		18.23	■□□□□ 0.51
COPS7B-222	ENST00000492423	GPATCH3	Q96I76	525 aa		18.23	■□□□□ 0.51
COPS7B-222	ENST00000492423	MINPP1	Q9UNW1	487 aa		18.23	■□□□□ 0.51
COPS7B-222	ENST00000492423	MYH7	P12883	1935 aa		18.23	■□□□□ 0.51
COPS7B-222	ENST00000492423	TAF5L	O75529	589 aa		18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	GLRX3	O76003	335 aa	Known RBP	18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	ZBTB7A	O95365	584 aa		18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	ATXN8OS	P0DMR3	200 aa		18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	SRGN	P10124	158 aa		18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	SDS	P20132	328 aa		18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	PUM3	Q15397	648 aa	Known RBP	18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	NEUROD6	Q96NK8	337 aa		18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	MTFR1L	Q9H019	292 aa		18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	MYO5A	Q9Y4I1	1855 aa	Known RBP	18.22	■□□□□ 0.51
COPS7B-222	ENST00000492423	ERC2	O15083	957 aa		18.21	■□□□□ 0.51
COPS7B-222	ENST00000492423	NPR1	P16066	1061 aa		18.21	■□□□□ 0.51
COPS7B-222	ENST00000492423	FXR2	P51116	673 aa	Known RBP eCLIP	18.21	■□□□□ 0.51
COPS7B-222	ENST00000492423	XAGE2	Q96GT9	111 aa		18.21	■□□□□ 0.51
COPS7B-222	ENST00000492423	BACH2	Q9BYV9	841 aa		18.21	■□□□□ 0.51
COPS7B-222	ENST00000492423	DOCK2	Q92608	1830 aa		18.21	■□□□□ 0.51
COPS7B-222	ENST00000492423	SNAP23	O00161	211 aa		18.2	■□□□□ 0.5
COPS7B-222	ENST00000492423	ATP5J	P18859	108 aa		18.2	■□□□□ 0.5
COPS7B-222	ENST00000492423	LPIN2	Q92539	896 aa		18.2	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms