RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ALDH1L2Q3SY69 923 aa31.3■■■□□ 2.6
UPF3A-209ENST00000492270 ITGA6P23229 1130 aa31.29■■■□□ 2.6
UPF3A-209ENST00000492270 FOXO4P98177 505 aa31.29■■■□□ 2.6
UPF3A-209ENST00000492270 DBNDD1Q9H9R9 158 aa31.29■■■□□ 2.6
UPF3A-209ENST00000492270 SMC4Q9NTJ3 1288 aa31.29■■■□□ 2.6
UPF3A-209ENST00000492270 RAD17O75943 681 aa31.28■■■□□ 2.6
UPF3A-209ENST00000492270 APLP1P51693 650 aa31.28■■■□□ 2.6
UPF3A-209ENST00000492270 EAPPQ56P03 285 aaPredicted RBP31.28■■■□□ 2.6
UPF3A-209ENST00000492270 EPHA10Q5JZY3 1008 aa31.28■■■□□ 2.6
UPF3A-209ENST00000492270 EYA3Q99504 573 aa31.28■■■□□ 2.6
UPF3A-209ENST00000492270 PSME4Q14997 1843 aa31.28■■■□□ 2.6
UPF3A-209ENST00000492270 XDHP47989 1333 aa31.27■■■□□ 2.6
UPF3A-209ENST00000492270 CHADLQ6NUI6 762 aa31.27■■■□□ 2.6
UPF3A-209ENST00000492270 BSDC1Q9NW68 430 aaPredicted RBP31.27■■■□□ 2.6
UPF3A-209ENST00000492270 C9orf78Q9NZ63 289 aaPredicted RBP31.27■■■□□ 2.6
UPF3A-209ENST00000492270 GGA1Q9UJY5 639 aa31.27■■■□□ 2.6
UPF3A-209ENST00000492270 EPS15P42566 896 aa31.26■■■□□ 2.59
UPF3A-209ENST00000492270 HTRA3P83110 453 aa31.26■■■□□ 2.59
UPF3A-209ENST00000492270 HNRNPUQ00839 825 aaKnown RBP eCLIP31.26■■■□□ 2.59
UPF3A-209ENST00000492270 DOK7Q18PE1 504 aa31.26■■■□□ 2.59
UPF3A-209ENST00000492270 CIAPIN1Q6FI81 312 aa31.26■■■□□ 2.59
UPF3A-209ENST00000492270 MINPP1Q9UNW1 487 aa31.26■■■□□ 2.59
UPF3A-209ENST00000492270 WTIPA6NIX2 430 aaPredicted RBP31.25■■■□□ 2.59
UPF3A-209ENST00000492270 LMOD1P29536 600 aaPredicted RBP31.25■■■□□ 2.59
UPF3A-209ENST00000492270 ECE2O60344 883 aa31.24■■■□□ 2.59
UPF3A-209ENST00000492270 CT47B1P0C2W7 299 aaPredicted RBP31.24■■■□□ 2.59
UPF3A-209ENST00000492270 IGHMBP2P38935 993 aaKnown RBP31.24■■■□□ 2.59
UPF3A-209ENST00000492270 LDHDQ86WU2 507 aa31.24■■■□□ 2.59
UPF3A-209ENST00000492270 ZC3H12CQ9C0D7 883 aaKnown RBP31.23■■■□□ 2.59
UPF3A-209ENST00000492270 CHMP3Q9Y3E7 222 aa31.23■■■□□ 2.59
UPF3A-209ENST00000492270 NBPF7P0C2Y1 421 aaPredicted RBP31.22■■■□□ 2.59
UPF3A-209ENST00000492270 GMPSP49915 693 aaPredicted RBP31.22■■■□□ 2.59
UPF3A-209ENST00000492270 LMBR1LQ6UX01 489 aa31.22■■■□□ 2.59
UPF3A-209ENST00000492270 SUCLG2Q96I99 432 aa31.22■■■□□ 2.59
UPF3A-209ENST00000492270 KCNQ5Q9NR82 932 aa31.22■■■□□ 2.59
UPF3A-209ENST00000492270 TNIP1Q15025 636 aa31.21■■■□□ 2.59
UPF3A-209ENST00000492270 PNMA8AQ86V59 439 aaPredicted RBP31.21■■■□□ 2.59
UPF3A-209ENST00000492270 GPRC5DQ9NZD1 345 aa31.21■■■□□ 2.59
UPF3A-209ENST00000492270 CLEC11AQ9Y240 323 aa31.21■■■□□ 2.59
UPF3A-209ENST00000492270 ZNF646O15015 1829 aaPredicted RBP31.21■■■□□ 2.59
UPF3A-209ENST00000492270 ANKRD18BA2A2Z9 1011 aa31.2■■■□□ 2.59
UPF3A-209ENST00000492270 ATP2B4P23634 1241 aa31.2■■■□□ 2.59
UPF3A-209ENST00000492270 KAZALD1Q96I82 304 aa31.2■■■□□ 2.59
UPF3A-209ENST00000492270 UTYO14607 1347 aa31.2■■■□□ 2.58
UPF3A-209ENST00000492270 PSMD14O00487 310 aa31.19■■■□□ 2.58
UPF3A-209ENST00000492270 MPHOSPH8Q99549 860 aa31.19■■■□□ 2.58
UPF3A-209ENST00000492270 CCT4P50991 539 aaKnown RBP31.18■■■□□ 2.58
UPF3A-209ENST00000492270 RARSP54136 660 aaKnown RBP31.18■■■□□ 2.58
UPF3A-209ENST00000492270 IFIT5Q13325 482 aaKnown RBP31.18■■■□□ 2.58
UPF3A-209ENST00000492270 NOB1Q9ULX3 412 aaKnown RBP31.18■■■□□ 2.58
UPF3A-209ENST00000492270 ZBTB12Q9Y330 459 aaPredicted RBP31.17■■■□□ 2.58
UPF3A-209ENST00000492270 SHTN1A0MZ66 631 aa31.16■■■□□ 2.58
UPF3A-209ENST00000492270 ZNF594Q96JF6 807 aaPredicted RBP31.16■■■□□ 2.58
UPF3A-209ENST00000492270 MED23Q9ULK4 1368 aa31.16■■■□□ 2.58
UPF3A-209ENST00000492270 G3V3G9 751 aa31.15■■■□□ 2.58
UPF3A-209ENST00000492270 DCAF8Q5TAQ9 597 aa31.15■■■□□ 2.58
UPF3A-209ENST00000492270 MAP1SQ66K74 1059 aaPredicted RBP31.15■■■□□ 2.58
UPF3A-209ENST00000492270 BRPF1P55201 1214 aaPredicted RBP31.14■■■□□ 2.58
UPF3A-209ENST00000492270 CHRNDQ07001 517 aa31.14■■■□□ 2.58
UPF3A-209ENST00000492270 DNAJC5GQ8N7S2 189 aa31.14■■■□□ 2.58
UPF3A-209ENST00000492270 ADARB2Q9NS39 739 aaKnown RBP31.14■■■□□ 2.58
UPF3A-209ENST00000492270 CCDC57Q2TAC2 916 aa31.13■■■□□ 2.57
UPF3A-209ENST00000492270 USP50Q70EL3 339 aaPredicted RBP31.13■■■□□ 2.57
UPF3A-209ENST00000492270 USP44Q9H0E7 712 aa31.13■■■□□ 2.57
UPF3A-209ENST00000492270 BICC1Q9H694 974 aaKnown RBP31.13■■■□□ 2.57
UPF3A-209ENST00000492270 PASKQ96RG2 1323 aa31.13■■■□□ 2.57
UPF3A-209ENST00000492270 ITGBL1O95965 494 aaPredicted RBP31.12■■■□□ 2.57
UPF3A-209ENST00000492270 KLRK1P26718 216 aa31.12■■■□□ 2.57
UPF3A-209ENST00000492270 TXNRD3Q86VQ6 643 aa31.12■■■□□ 2.57
UPF3A-209ENST00000492270 ANKRD2Q9GZV1 360 aa31.12■■■□□ 2.57
UPF3A-209ENST00000492270 ZNF804BA4D1E1 1349 aa31.11■■■□□ 2.57
UPF3A-209ENST00000492270 HELBQ8NG08 1087 aaPredicted RBP31.11■■■□□ 2.57
UPF3A-209ENST00000492270 CNOT7Q9UIV1 285 aaKnown RBP31.11■■■□□ 2.57
UPF3A-209ENST00000492270 LEMD3Q9Y2U8 911 aa31.11■■■□□ 2.57
UPF3A-209ENST00000492270 SNAP23O00161 211 aa31.1■■■□□ 2.57
UPF3A-209ENST00000492270 TAF7LQ5H9L4 462 aa31.1■■■□□ 2.57
UPF3A-209ENST00000492270 MICALL2Q8IY33 904 aa31.1■■■□□ 2.57
UPF3A-209ENST00000492270 ANKRD44Q8N8A2 993 aa31.1■■■□□ 2.57
UPF3A-209ENST00000492270 TRPM7Q96QT4 1865 aa31.1■■■□□ 2.57
UPF3A-209ENST00000492270 TAF5LO75529 589 aa31.09■■■□□ 2.57
UPF3A-209ENST00000492270 CNTROBQ8N137 903 aa31.09■■■□□ 2.57
UPF3A-209ENST00000492270 TRPM4Q8TD43 1214 aa31.09■■■□□ 2.57
UPF3A-209ENST00000492270 RABL6Q3YEC7 729 aaPredicted RBP31.08■■■□□ 2.57
UPF3A-209ENST00000492270 API5Q9BZZ5 524 aaKnown RBP31.08■■■□□ 2.57
UPF3A-209ENST00000492270 KIF16BQ96L93 1317 aa31.07■■■□□ 2.56
UPF3A-209ENST00000492270 POLR2AP24928 1970 aaKnown RBP31.07■■■□□ 2.56
UPF3A-209ENST00000492270 VIL1P09327 827 aaKnown RBP31.07■■■□□ 2.56
UPF3A-209ENST00000492270 HIRAP54198 1017 aaPredicted RBP31.07■■■□□ 2.56
UPF3A-209ENST00000492270 LDHAL6AQ6ZMR3 332 aa31.07■■■□□ 2.56
UPF3A-209ENST00000492270 DPF2Q92785 391 aa31.07■■■□□ 2.56
UPF3A-209ENST00000492270 ZBED9Q6R2W3 1325 aa31.06■■■□□ 2.56
UPF3A-209ENST00000492270 BCAR3O75815 825 aa31.06■■■□□ 2.56
UPF3A-209ENST00000492270 CNNM1Q9NRU3 951 aa31.06■■■□□ 2.56
UPF3A-209ENST00000492270 RPS12P25398 132 aaKnown RBP31.05■■■□□ 2.56
UPF3A-209ENST00000492270 KCNJ4P48050 445 aa31.05■■■□□ 2.56
UPF3A-209ENST00000492270 PODNQ7Z5L7 613 aa31.05■■■□□ 2.56
UPF3A-209ENST00000492270 PUS3Q9BZE2 481 aaKnown RBP31.05■■■□□ 2.56
UPF3A-209ENST00000492270 IRS2Q9Y4H2 1338 aa31.04■■■□□ 2.56
UPF3A-209ENST00000492270 H7C1D1 291 aa31.04■■■□□ 2.56
UPF3A-209ENST00000492270 EGFRP00533 1210 aa31.04■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms