RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 PA2G4Q9UQ80 394 aaKnown RBP19.52■□□□□ 0.72
SYNE1-227ENST00000489156 KCNA3P22001 575 aa19.52■□□□□ 0.71
SYNE1-227ENST00000489156 G3BP1Q13283 466 aaKnown RBP eCLIP19.52■□□□□ 0.71
SYNE1-227ENST00000489156 OTUD7AQ8TE49 926 aaPredicted RBP19.52■□□□□ 0.71
SYNE1-227ENST00000489156 AOX1Q06278 1338 aa19.51■□□□□ 0.71
SYNE1-227ENST00000489156 MX1P20591 662 aa19.51■□□□□ 0.71
SYNE1-227ENST00000489156 ANP32AP39687 249 aaKnown RBP19.51■□□□□ 0.71
SYNE1-227ENST00000489156 PTPN12Q05209 780 aaKnown RBP19.51■□□□□ 0.71
SYNE1-227ENST00000489156 TAF7LQ5H9L4 462 aa19.51■□□□□ 0.71
SYNE1-227ENST00000489156 NLGN2Q8NFZ4 835 aa19.51■□□□□ 0.71
SYNE1-227ENST00000489156 CRAMP1Q96RY5 1269 aa19.5■□□□□ 0.71
SYNE1-227ENST00000489156 CDC5LQ99459 802 aaKnown RBP19.5■□□□□ 0.71
SYNE1-227ENST00000489156 SLX4Q8IY92 1834 aa19.5■□□□□ 0.71
SYNE1-227ENST00000489156 EIF5BO60841 1220 aaKnown RBP19.5■□□□□ 0.71
SYNE1-227ENST00000489156 GSPT1P15170 499 aaKnown RBP19.5■□□□□ 0.71
SYNE1-227ENST00000489156 RPS8P62241 208 aaKnown RBP19.5■□□□□ 0.71
SYNE1-227ENST00000489156 GRAPQ13588 217 aa19.5■□□□□ 0.71
SYNE1-227ENST00000489156 STYK1Q6J9G0 422 aa19.5■□□□□ 0.71
SYNE1-227ENST00000489156 ANKRD18AQ8IVF6 992 aa19.5■□□□□ 0.71
SYNE1-227ENST00000489156 CLASRPQ8N2M8 674 aaKnown RBP19.5■□□□□ 0.71
SYNE1-227ENST00000489156 GRAPLQ8TC17 118 aaPredicted RBP19.5■□□□□ 0.71
SYNE1-227ENST00000489156 SIL1Q9H173 461 aa19.5■□□□□ 0.71
SYNE1-227ENST00000489156 LRP5O75197 1615 aa19.49■□□□□ 0.71
SYNE1-227ENST00000489156 BRCA1P38398 1863 aaKnown RBP19.49■□□□□ 0.71
SYNE1-227ENST00000489156 ALDH1B1P30837 517 aa19.49■□□□□ 0.71
SYNE1-227ENST00000489156 UPF2Q9HAU5 1272 aaKnown RBP19.49■□□□□ 0.71
SYNE1-227ENST00000489156 IL1RAPL2Q9NP60 686 aa19.49■□□□□ 0.71
SYNE1-227ENST00000489156 WWC3Q9ULE0 1092 aa19.49■□□□□ 0.71
SYNE1-227ENST00000489156 IGHMBP2P38935 993 aaKnown RBP19.48■□□□□ 0.71
SYNE1-227ENST00000489156 SYT17Q9BSW7 474 aa19.48■□□□□ 0.71
SYNE1-227ENST00000489156 PUS3Q9BZE2 481 aaKnown RBP19.48■□□□□ 0.71
SYNE1-227ENST00000489156 BCL11AQ9H165 835 aa19.48■□□□□ 0.71
SYNE1-227ENST00000489156 LDHAL6AQ6ZMR3 332 aa19.48■□□□□ 0.71
SYNE1-227ENST00000489156 MPHOSPH8Q99549 860 aa19.48■□□□□ 0.71
SYNE1-227ENST00000489156 CNKSR1Q969H4 720 aa19.47■□□□□ 0.71
SYNE1-227ENST00000489156 SASH1O94885 1247 aa19.46■□□□□ 0.71
SYNE1-227ENST00000489156 SEC24BO95487 1268 aa19.46■□□□□ 0.71
SYNE1-227ENST00000489156 LRRC24Q50LG9 513 aa19.46■□□□□ 0.71
SYNE1-227ENST00000489156 SLC51AQ86UW1 340 aa19.46■□□□□ 0.71
SYNE1-227ENST00000489156 PIM2Q9P1W9 311 aa19.46■□□□□ 0.71
SYNE1-227ENST00000489156 CDC45O75419 566 aa19.45■□□□□ 0.7
SYNE1-227ENST00000489156 BBOX1O75936 387 aa19.45■□□□□ 0.7
SYNE1-227ENST00000489156 PRPF40BQ6NWY9 871 aaKnown RBP19.45■□□□□ 0.7
SYNE1-227ENST00000489156 TTLL6Q8N841 843 aa19.45■□□□□ 0.7
SYNE1-227ENST00000489156 CNNM1Q9NRU3 951 aa19.45■□□□□ 0.7
SYNE1-227ENST00000489156 BSDC1Q9NW68 430 aaPredicted RBP19.45■□□□□ 0.7
SYNE1-227ENST00000489156 FBXO3Q9UK99 471 aa19.45■□□□□ 0.7
SYNE1-227ENST00000489156 TTC41PQ6P2S7 1318 aa19.45■□□□□ 0.7
SYNE1-227ENST00000489156 EYA2O00167 538 aa19.44■□□□□ 0.7
SYNE1-227ENST00000489156 PPEF1O14829 653 aaPredicted RBP19.44■□□□□ 0.7
SYNE1-227ENST00000489156 SDSP20132 328 aa19.44■□□□□ 0.7
SYNE1-227ENST00000489156 ATG9AQ7Z3C6 839 aa19.44■□□□□ 0.7
SYNE1-227ENST00000489156 ZNF219Q9P2Y4 722 aaPredicted RBP19.44■□□□□ 0.7
SYNE1-227ENST00000489156 RIPOR2Q9Y4F9 1068 aa19.43■□□□□ 0.7
SYNE1-227ENST00000489156 IFIT2P09913 472 aaKnown RBP19.43■□□□□ 0.7
SYNE1-227ENST00000489156 OLFM4Q6UX06 510 aa19.43■□□□□ 0.7
SYNE1-227ENST00000489156 TBC1D9Q6ZT07 1266 aa19.43■□□□□ 0.7
SYNE1-227ENST00000489156 GPATCH3Q96I76 525 aa19.43■□□□□ 0.7
SYNE1-227ENST00000489156 CASC1Q6TDU7 716 aa19.42■□□□□ 0.7
SYNE1-227ENST00000489156 MINPP1Q9UNW1 487 aa19.42■□□□□ 0.7
SYNE1-227ENST00000489156 ERC2O15083 957 aa19.41■□□□□ 0.7
SYNE1-227ENST00000489156 CIAO1O76071 339 aa19.41■□□□□ 0.7
SYNE1-227ENST00000489156 DALRD3Q5D0E6 543 aaKnown RBP19.41■□□□□ 0.7
SYNE1-227ENST00000489156 HELBQ8NG08 1087 aaPredicted RBP19.41■□□□□ 0.7
SYNE1-227ENST00000489156 IL15P40933 162 aaPredicted RBP19.41■□□□□ 0.7
SYNE1-227ENST00000489156 CHRNDQ07001 517 aa19.41■□□□□ 0.7
SYNE1-227ENST00000489156 SP8Q8IXZ3 490 aa19.41■□□□□ 0.7
SYNE1-227ENST00000489156 BCS1LQ9Y276 419 aa19.41■□□□□ 0.7
SYNE1-227ENST00000489156 ATP6V0A2Q9Y487 856 aa19.41■□□□□ 0.7
SYNE1-227ENST00000489156 A0A1B0GUL6 1792 aa19.41■□□□□ 0.7
SYNE1-227ENST00000489156 C21orf2O43822 256 aa19.4■□□□□ 0.7
SYNE1-227ENST00000489156 GLRX3O76003 335 aaKnown RBP19.4■□□□□ 0.7
SYNE1-227ENST00000489156 TMC4Q7Z404 712 aa19.4■□□□□ 0.7
SYNE1-227ENST00000489156 AACSQ86V21 672 aa19.4■□□□□ 0.7
SYNE1-227ENST00000489156 PI4K2BQ8TCG2 481 aa19.4■□□□□ 0.7
SYNE1-227ENST00000489156 C7orf43Q8WVR3 580 aa19.4■□□□□ 0.7
SYNE1-227ENST00000489156 ECHDC1Q9NTX5 307 aa19.4■□□□□ 0.7
SYNE1-227ENST00000489156 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.4■□□□□ 0.7
SYNE1-227ENST00000489156 LRRC37AA6NMS7 1700 aa19.4■□□□□ 0.7
SYNE1-227ENST00000489156 TAF5LO75529 589 aa19.39■□□□□ 0.7
SYNE1-227ENST00000489156 METTL24Q5JXM2 366 aa19.39■□□□□ 0.7
SYNE1-227ENST00000489156 EAF2Q96CJ1 260 aaPredicted RBP19.39■□□□□ 0.7
SYNE1-227ENST00000489156 TBC1D32Q96NH3 1257 aa19.39■□□□□ 0.7
SYNE1-227ENST00000489156 IPO9Q96P70 1041 aaKnown RBP19.39■□□□□ 0.7
SYNE1-227ENST00000489156 TFCP2Q12800 502 aa19.39■□□□□ 0.69
SYNE1-227ENST00000489156 GPR108Q9NPR9 543 aa19.39■□□□□ 0.69
SYNE1-227ENST00000489156 MROH5Q6ZUA9 1318 aa19.38■□□□□ 0.69
SYNE1-227ENST00000489156 TSHZ3Q63HK5 1081 aa19.38■□□□□ 0.69
SYNE1-227ENST00000489156 TMX4Q9H1E5 349 aaPredicted RBP19.38■□□□□ 0.69
SYNE1-227ENST00000489156 CEP126Q9P2H0 1117 aa19.38■□□□□ 0.69
SYNE1-227ENST00000489156 NSFL1CQ9UNZ2 370 aaKnown RBP19.38■□□□□ 0.69
SYNE1-227ENST00000489156 ARFGEF1Q9Y6D6 1849 aa19.38■□□□□ 0.69
SYNE1-227ENST00000489156 MFAP1P55081 439 aaKnown RBP19.37■□□□□ 0.69
SYNE1-227ENST00000489156 GPSM2P81274 684 aa19.37■□□□□ 0.69
SYNE1-227ENST00000489156 DDRGK1Q96HY6 314 aa19.37■□□□□ 0.69
SYNE1-227ENST00000489156 ANKIB1Q9P2G1 1089 aa19.37■□□□□ 0.69
SYNE1-227ENST00000489156 WTIPA6NIX2 430 aaPredicted RBP19.37■□□□□ 0.69
SYNE1-227ENST00000489156 SNAP23O00161 211 aa19.37■□□□□ 0.69
SYNE1-227ENST00000489156 VGLL2Q8N8G2 317 aa19.37■□□□□ 0.69
SYNE1-227ENST00000489156 UTRNP46939 3433 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms