RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 RNF186Q9NXI6 227 aa20.11■□□□□ 0.81
MCF2L-228ENST00000487354 TRIM35Q9UPQ4 493 aa20.11■□□□□ 0.81
MCF2L-228ENST00000487354 KIF4BQ2VIQ3 1234 aa20.1■□□□□ 0.81
MCF2L-228ENST00000487354 RBM26Q5T8P6 1007 aaKnown RBP20.1■□□□□ 0.81
MCF2L-228ENST00000487354 GGA3Q9NZ52 723 aa20.1■□□□□ 0.81
MCF2L-228ENST00000487354 SPEF2Q9C093 1822 aa20.1■□□□□ 0.81
MCF2L-228ENST00000487354 C6orf229H3BNL8 230 aa20.09■□□□□ 0.81
MCF2L-228ENST00000487354 VIL1P09327 827 aaKnown RBP20.09■□□□□ 0.81
MCF2L-228ENST00000487354 LMOD3Q0VAK6 560 aa20.09■□□□□ 0.81
MCF2L-228ENST00000487354 ANKRD13DQ6ZTN6 518 aa20.09■□□□□ 0.81
MCF2L-228ENST00000487354 C2orf69Q8N8R5 385 aa20.09■□□□□ 0.81
MCF2L-228ENST00000487354 CCDC102AQ96A19 550 aa20.09■□□□□ 0.81
MCF2L-228ENST00000487354 TRPA1O75762 1119 aa20.08■□□□□ 0.81
MCF2L-228ENST00000487354 ZNF157P51786 506 aaPredicted RBP20.08■□□□□ 0.81
MCF2L-228ENST00000487354 SOX10P56693 466 aa20.08■□□□□ 0.81
MCF2L-228ENST00000487354 HDGFL1Q5TGJ6 251 aa20.08■□□□□ 0.81
MCF2L-228ENST00000487354 DCPSQ96C86 337 aaKnown RBP20.08■□□□□ 0.81
MCF2L-228ENST00000487354 CDCA5Q96FF9 252 aa20.08■□□□□ 0.81
MCF2L-228ENST00000487354 CSRNP1Q96S65 589 aa20.08■□□□□ 0.81
MCF2L-228ENST00000487354 PODXL2Q9NZ53 605 aa20.08■□□□□ 0.81
MCF2L-228ENST00000487354 HOXB7P09629 217 aa20.07■□□□□ 0.8
MCF2L-228ENST00000487354 ZNF280AP59817 542 aaPredicted RBP20.07■□□□□ 0.8
MCF2L-228ENST00000487354 TRIM28Q13263 835 aaKnown RBP20.07■□□□□ 0.8
MCF2L-228ENST00000487354 RTL5Q5HYW3 569 aaPredicted RBP20.07■□□□□ 0.8
MCF2L-228ENST00000487354 RASAL3Q86YV0 1011 aa20.07■□□□□ 0.8
MCF2L-228ENST00000487354 SEC31BQ9NQW1 1179 aa20.07■□□□□ 0.8
MCF2L-228ENST00000487354 IRS4O14654 1257 aaPredicted RBP20.06■□□□□ 0.8
MCF2L-228ENST00000487354 RPS8P62241 208 aaKnown RBP20.06■□□□□ 0.8
MCF2L-228ENST00000487354 CCDC146Q8IYE0 955 aa20.06■□□□□ 0.8
MCF2L-228ENST00000487354 EYA3Q99504 573 aa20.06■□□□□ 0.8
MCF2L-228ENST00000487354 MYH3P11055 1940 aa20.06■□□□□ 0.8
MCF2L-228ENST00000487354 GMLQ99445 158 aa20.05■□□□□ 0.8
MCF2L-228ENST00000487354 DBF4Q9UBU7 674 aaPredicted RBP20.05■□□□□ 0.8
MCF2L-228ENST00000487354 NEUROD2Q15784 382 aa20.04■□□□□ 0.8
MCF2L-228ENST00000487354 SULF1Q8IWU6 871 aa20.04■□□□□ 0.8
MCF2L-228ENST00000487354 PCDH10Q9P2E7 1040 aa20.04■□□□□ 0.8
MCF2L-228ENST00000487354 UFL1O94874 794 aa20.03■□□□□ 0.8
MCF2L-228ENST00000487354 ANGEL2Q5VTE6 544 aaKnown RBP20.03■□□□□ 0.8
MCF2L-228ENST00000487354 SCARF1Q14162 830 aa20.02■□□□□ 0.8
MCF2L-228ENST00000487354 RSBN1LQ6PCB5 846 aaPredicted RBP20.02■□□□□ 0.8
MCF2L-228ENST00000487354 ZBTB38Q8NAP3 1195 aaPredicted RBP20.02■□□□□ 0.8
MCF2L-228ENST00000487354 LAS1LQ9Y4W2 734 aaKnown RBP20.02■□□□□ 0.8
MCF2L-228ENST00000487354 LAMB1P07942 1786 aa20.02■□□□□ 0.8
MCF2L-228ENST00000487354 DUSP27Q5VZP5 1158 aa20.01■□□□□ 0.79
MCF2L-228ENST00000487354 MOB2Q70IA6 237 aa20.01■□□□□ 0.79
MCF2L-228ENST00000487354 CTU1Q7Z7A3 348 aaKnown RBP20.01■□□□□ 0.79
MCF2L-228ENST00000487354 AGBL3Q8NEM8 1001 aa20.01■□□□□ 0.79
MCF2L-228ENST00000487354 ZC3H12CQ9C0D7 883 aaKnown RBP20.01■□□□□ 0.79
MCF2L-228ENST00000487354 HYPKQ9NX55 129 aa20.01■□□□□ 0.79
MCF2L-228ENST00000487354 SCAF8Q9UPN6 1271 aaKnown RBP20.01■□□□□ 0.79
MCF2L-228ENST00000487354 HTTP42858 3142 aa20.01■□□□□ 0.79
MCF2L-228ENST00000487354 WTIPA6NIX2 430 aaPredicted RBP20■□□□□ 0.79
MCF2L-228ENST00000487354 RALBP1Q15311 655 aa20■□□□□ 0.79
MCF2L-228ENST00000487354 GGA1Q9UJY5 639 aa20■□□□□ 0.79
MCF2L-228ENST00000487354 PITPNM2Q9BZ72 1349 aa20■□□□□ 0.79
MCF2L-228ENST00000487354 PHAXQ9H814 394 aaKnown RBP19.99■□□□□ 0.79
MCF2L-228ENST00000487354 MBIPQ9NS73 344 aa19.99■□□□□ 0.79
MCF2L-228ENST00000487354 ZNF853P0CG23 659 aa19.98■□□□□ 0.79
MCF2L-228ENST00000487354 FKBP1BP68106 108 aa19.98■□□□□ 0.79
MCF2L-228ENST00000487354 RUNDC1Q96C34 613 aa19.98■□□□□ 0.79
MCF2L-228ENST00000487354 MYOZ2Q9NPC6 264 aa19.98■□□□□ 0.79
MCF2L-228ENST00000487354 ANKIB1Q9P2G1 1089 aa19.98■□□□□ 0.79
MCF2L-228ENST00000487354 HPS5Q9UPZ3 1129 aa19.98■□□□□ 0.79
MCF2L-228ENST00000487354 JARID2Q92833 1246 aaPredicted RBP19.97■□□□□ 0.79
MCF2L-228ENST00000487354 A0A1B0GUL6 1792 aa19.96■□□□□ 0.79
MCF2L-228ENST00000487354 PCCAP05165 728 aaPredicted RBP19.96■□□□□ 0.79
MCF2L-228ENST00000487354 USP17L8P0C7I0 530 aa19.96■□□□□ 0.79
MCF2L-228ENST00000487354 REM2Q8IYK8 340 aaPredicted RBP19.96■□□□□ 0.79
MCF2L-228ENST00000487354 CCDC85AQ96PX6 553 aaPredicted RBP19.96■□□□□ 0.79
MCF2L-228ENST00000487354 MYD88Q99836 296 aa19.96■□□□□ 0.79
MCF2L-228ENST00000487354 XDHP47989 1333 aa19.96■□□□□ 0.79
MCF2L-228ENST00000487354 PRAMEF18Q5VWM3 479 aa19.95■□□□□ 0.78
MCF2L-228ENST00000487354 ZNF296Q8WUU4 475 aaPredicted RBP19.95■□□□□ 0.78
MCF2L-228ENST00000487354 MYBBP1AQ9BQG0 1328 aaKnown RBP19.95■□□□□ 0.78
MCF2L-228ENST00000487354 MKI67P46013 3256 aaKnown RBP19.94■□□□□ 0.78
MCF2L-228ENST00000487354 PDE8AO60658 829 aa19.94■□□□□ 0.78
MCF2L-228ENST00000487354 NBPF9Q3BBW0 867 aa19.94■□□□□ 0.78
MCF2L-228ENST00000487354 CCDC152Q4G0S7 254 aa19.94■□□□□ 0.78
MCF2L-228ENST00000487354 PRPF38BQ5VTL8 546 aaKnown RBP19.94■□□□□ 0.78
MCF2L-228ENST00000487354 RIC3Q7Z5B4 369 aa19.94■□□□□ 0.78
MCF2L-228ENST00000487354 CCDC191Q8NCU4 936 aa19.94■□□□□ 0.78
MCF2L-228ENST00000487354 MXD3Q9BW11 206 aa19.94■□□□□ 0.78
MCF2L-228ENST00000487354 ECM29Q5VYK3 1845 aa19.94■□□□□ 0.78
MCF2L-228ENST00000487354 MED23Q9ULK4 1368 aa19.94■□□□□ 0.78
MCF2L-228ENST00000487354 USP17L3A6NCW0 530 aa19.93■□□□□ 0.78
MCF2L-228ENST00000487354 USP17L4A6NCW7 530 aa19.93■□□□□ 0.78
MCF2L-228ENST00000487354 UBE2Q2LH0YL09 131 aa19.93■□□□□ 0.78
MCF2L-228ENST00000487354 GOLGA2Q08379 1002 aa19.93■□□□□ 0.78
MCF2L-228ENST00000487354 USP17L1Q7RTZ2 530 aa19.93■□□□□ 0.78
MCF2L-228ENST00000487354 PODNQ7Z5L7 613 aa19.93■□□□□ 0.78
MCF2L-228ENST00000487354 ADAMTS8Q9UP79 889 aa19.93■□□□□ 0.78
MCF2L-228ENST00000487354 TBC1D8O95759 1140 aa19.92■□□□□ 0.78
MCF2L-228ENST00000487354 DACT2Q5SW24 774 aa19.92■□□□□ 0.78
MCF2L-228ENST00000487354 G3V3G9 751 aa19.91■□□□□ 0.78
MCF2L-228ENST00000487354 ATP2B4P23634 1241 aa19.91■□□□□ 0.78
MCF2L-228ENST00000487354 TM4SF4P48230 202 aa19.91■□□□□ 0.78
MCF2L-228ENST00000487354 DCAF8Q5TAQ9 597 aa19.91■□□□□ 0.78
MCF2L-228ENST00000487354 ANKRD18AQ8IVF6 992 aa19.91■□□□□ 0.78
MCF2L-228ENST00000487354 METTL22Q9BUU2 404 aaPredicted RBP19.91■□□□□ 0.78
MCF2L-228ENST00000487354 CWC25Q9NXE8 425 aaPredicted RBP19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms