RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 CCDC191Q8NCU4 936 aa16.89■□□□□ 0.29
HDAC6-227ENST00000485102 CCDC102AQ96A19 550 aa16.89■□□□□ 0.29
HDAC6-227ENST00000485102 KCNQ5Q9NR82 932 aa16.89■□□□□ 0.29
HDAC6-227ENST00000485102 TSKSQ9UJT2 592 aa16.89■□□□□ 0.29
HDAC6-227ENST00000485102 COL4A1P02462 1669 aa16.88■□□□□ 0.29
HDAC6-227ENST00000485102 FAM155AB1AL88 458 aaPredicted RBP16.88■□□□□ 0.29
HDAC6-227ENST00000485102 EGFRP00533 1210 aa16.88■□□□□ 0.29
HDAC6-227ENST00000485102 DDX10Q13206 875 aaKnown RBP16.88■□□□□ 0.29
HDAC6-227ENST00000485102 RGMBQ6NW40 437 aa16.88■□□□□ 0.29
HDAC6-227ENST00000485102 RIC3Q7Z5B4 369 aa16.88■□□□□ 0.29
HDAC6-227ENST00000485102 C2orf69Q8N8R5 385 aa16.88■□□□□ 0.29
HDAC6-227ENST00000485102 DCPSQ96C86 337 aaKnown RBP16.88■□□□□ 0.29
HDAC6-227ENST00000485102 CHMP4AQ9BY43 222 aa16.88■□□□□ 0.29
HDAC6-227ENST00000485102 GBA2Q9HCG7 927 aaPredicted RBP16.88■□□□□ 0.29
HDAC6-227ENST00000485102 IFT57Q9NWB7 429 aa16.88■□□□□ 0.29
HDAC6-227ENST00000485102 SCN9AQ15858 1988 aa16.88■□□□□ 0.29
HDAC6-227ENST00000485102 CCDC85CA6NKD9 419 aa16.87■□□□□ 0.29
HDAC6-227ENST00000485102 PCCAP05165 728 aaPredicted RBP16.87■□□□□ 0.29
HDAC6-227ENST00000485102 GOLGA2Q08379 1002 aa16.87■□□□□ 0.29
HDAC6-227ENST00000485102 DOK7Q18PE1 504 aa16.87■□□□□ 0.29
HDAC6-227ENST00000485102 FAM161AQ3B820 660 aa16.87■□□□□ 0.29
HDAC6-227ENST00000485102 AGBL3Q8NEM8 1001 aa16.87■□□□□ 0.29
HDAC6-227ENST00000485102 ZNF428Q96B54 188 aa16.87■□□□□ 0.29
HDAC6-227ENST00000485102 ZIC5Q96T25 663 aa16.87■□□□□ 0.29
HDAC6-227ENST00000485102 MCOLN1Q9GZU1 580 aa16.87■□□□□ 0.29
HDAC6-227ENST00000485102 SAGE1Q9NXZ1 904 aa16.87■□□□□ 0.29
HDAC6-227ENST00000485102 PDE8AO60658 829 aa16.86■□□□□ 0.29
HDAC6-227ENST00000485102 ZNF280AP59817 542 aaPredicted RBP16.86■□□□□ 0.29
HDAC6-227ENST00000485102 GNAI1P63096 354 aa16.86■□□□□ 0.29
HDAC6-227ENST00000485102 MLLT1Q03111 559 aaPredicted RBP16.86■□□□□ 0.29
HDAC6-227ENST00000485102 CALD1Q05682 793 aaKnown RBP16.86■□□□□ 0.29
HDAC6-227ENST00000485102 CCDC152Q4G0S7 254 aa16.86■□□□□ 0.29
HDAC6-227ENST00000485102 RTL5Q5HYW3 569 aaPredicted RBP16.86■□□□□ 0.29
HDAC6-227ENST00000485102 SEC31BQ9NQW1 1179 aa16.86■□□□□ 0.29
HDAC6-227ENST00000485102 KIF4BQ2VIQ3 1234 aa16.85■□□□□ 0.29
HDAC6-227ENST00000485102 DLK2Q6UY11 383 aa16.85■□□□□ 0.29
HDAC6-227ENST00000485102 PHAXQ9H814 394 aaKnown RBP16.85■□□□□ 0.29
HDAC6-227ENST00000485102 GGA1Q9UJY5 639 aa16.85■□□□□ 0.29
HDAC6-227ENST00000485102 SULF1Q8IWU6 871 aa16.84■□□□□ 0.29
HDAC6-227ENST00000485102 GMLQ99445 158 aa16.84■□□□□ 0.29
HDAC6-227ENST00000485102 METTL22Q9BUU2 404 aaPredicted RBP16.84■□□□□ 0.29
HDAC6-227ENST00000485102 ANKIB1Q9P2G1 1089 aa16.84■□□□□ 0.29
HDAC6-227ENST00000485102 ADM5C9JUS6 153 aa16.83■□□□□ 0.28
HDAC6-227ENST00000485102 UFL1O94874 794 aa16.83■□□□□ 0.28
HDAC6-227ENST00000485102 PSME4Q14997 1843 aa16.83■□□□□ 0.28
HDAC6-227ENST00000485102 RBM26Q5T8P6 1007 aaKnown RBP16.83■□□□□ 0.28
HDAC6-227ENST00000485102 RSBN1LQ6PCB5 846 aaPredicted RBP16.83■□□□□ 0.28
HDAC6-227ENST00000485102 PODNQ7Z5L7 613 aa16.83■□□□□ 0.28
HDAC6-227ENST00000485102 REM2Q8IYK8 340 aaPredicted RBP16.83■□□□□ 0.28
HDAC6-227ENST00000485102 MYD88Q99836 296 aa16.83■□□□□ 0.28
HDAC6-227ENST00000485102 PRKRIP1Q9H875 184 aaPredicted RBP16.83■□□□□ 0.28
HDAC6-227ENST00000485102 CWC25Q9NXE8 425 aaPredicted RBP16.83■□□□□ 0.28
HDAC6-227ENST00000485102 XDHP47989 1333 aa16.82■□□□□ 0.28
HDAC6-227ENST00000485102 DDX58O95786 925 aaKnown RBP16.82■□□□□ 0.28
HDAC6-227ENST00000485102 ZNF157P51786 506 aaPredicted RBP16.82■□□□□ 0.28
HDAC6-227ENST00000485102 FKBP1BP68106 108 aa16.82■□□□□ 0.28
HDAC6-227ENST00000485102 KIF23Q02241 960 aaPredicted RBP16.82■□□□□ 0.28
HDAC6-227ENST00000485102 DGKZQ13574 1117 aa16.82■□□□□ 0.28
HDAC6-227ENST00000485102 GGA3Q9NZ52 723 aa16.82■□□□□ 0.28
HDAC6-227ENST00000485102 PDE4DIPQ5VU43 2346 aa16.82■□□□□ 0.28
HDAC6-227ENST00000485102 PITPNM2Q9BZ72 1349 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 AKAP11Q9UKA4 1901 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 G3V3G9 751 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 APAF1O14727 1248 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 SLC34A2O95436 690 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 SLC10A3P09131 477 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 ATP2B4P23634 1241 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 DCAF8Q5TAQ9 597 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 CCDC30Q5VVM6 783 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 ANKRD18AQ8IVF6 992 aa16.81■□□□□ 0.28
HDAC6-227ENST00000485102 ELL2O00472 640 aaPredicted RBP16.8■□□□□ 0.28
HDAC6-227ENST00000485102 SCARF1Q14162 830 aa16.8■□□□□ 0.28
HDAC6-227ENST00000485102 C8orf58Q8NAV2 365 aa16.8■□□□□ 0.28
HDAC6-227ENST00000485102 CDCA5Q96FF9 252 aa16.8■□□□□ 0.28
HDAC6-227ENST00000485102 CSRNP1Q96S65 589 aa16.8■□□□□ 0.28
HDAC6-227ENST00000485102 RNF186Q9NXI6 227 aa16.8■□□□□ 0.28
HDAC6-227ENST00000485102 ASTN2O75129 1339 aaPredicted RBP16.79■□□□□ 0.28
HDAC6-227ENST00000485102 USP17L3A6NCW0 530 aa16.79■□□□□ 0.28
HDAC6-227ENST00000485102 USP17L4A6NCW7 530 aa16.79■□□□□ 0.28
HDAC6-227ENST00000485102 USP17L8P0C7I0 530 aa16.79■□□□□ 0.28
HDAC6-227ENST00000485102 MMP14P50281 582 aa16.79■□□□□ 0.28
HDAC6-227ENST00000485102 KSR2Q6VAB6 950 aa16.79■□□□□ 0.28
HDAC6-227ENST00000485102 USP17L1Q7RTZ2 530 aa16.79■□□□□ 0.28
HDAC6-227ENST00000485102 CDC5LQ99459 802 aaKnown RBP16.79■□□□□ 0.28
HDAC6-227ENST00000485102 BSDC1Q9NW68 430 aaPredicted RBP16.79■□□□□ 0.28
HDAC6-227ENST00000485102 ANGEL2Q5VTE6 544 aaKnown RBP16.78■□□□□ 0.28
HDAC6-227ENST00000485102 TTLL11Q8NHH1 800 aa16.78■□□□□ 0.28
HDAC6-227ENST00000485102 MYOZ2Q9NPC6 264 aa16.78■□□□□ 0.28
HDAC6-227ENST00000485102 MED23Q9ULK4 1368 aa16.77■□□□□ 0.28
HDAC6-227ENST00000485102 TRPA1O75762 1119 aa16.77■□□□□ 0.28
HDAC6-227ENST00000485102 IGKV5-2P06315 115 aa16.77■□□□□ 0.28
HDAC6-227ENST00000485102 CTSWP56202 376 aa16.77■□□□□ 0.28
HDAC6-227ENST00000485102 MINPP1Q9UNW1 487 aa16.77■□□□□ 0.28
HDAC6-227ENST00000485102 MAP3K2Q9Y2U5 619 aa16.77■□□□□ 0.28
HDAC6-227ENST00000485102 PI4KAP2A4QPH2 592 aa16.76■□□□□ 0.27
HDAC6-227ENST00000485102 RASAL3Q86YV0 1011 aa16.76■□□□□ 0.27
HDAC6-227ENST00000485102 PI4KAP1Q8N8J0 262 aa16.76■□□□□ 0.27
HDAC6-227ENST00000485102 JARID2Q92833 1246 aaPredicted RBP16.76■□□□□ 0.27
HDAC6-227ENST00000485102 PAPPA2Q9BXP8 1791 aa16.75■□□□□ 0.27
HDAC6-227ENST00000485102 STRIP1Q5VSL9 837 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms